Wall clock time and date at job start Mon Mar 30 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33397 * 122.53984 * 2 1 4 4 S 1.75879 * 109.59210 * 180.02562 * 3 2 1 5 5 C 1.75884 * 90.97335 * 359.82996 * 4 3 2 6 6 C 1.33384 * 109.59434 * 0.30221 * 5 4 3 7 7 C 1.50702 * 122.54345 * 179.90637 * 6 5 4 8 8 N 1.46505 * 109.46917 * 259.71003 * 7 6 5 9 9 C 1.34774 * 119.99513 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00513 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99464 * 179.97438 * 9 8 7 12 12 H 1.09004 * 109.47210 * 60.00192 * 11 9 8 13 13 C 1.53000 * 109.47313 * 300.00010 * 11 9 8 14 14 C 1.50702 * 109.46869 * 179.97438 * 11 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09004 * 109.47115 * 269.97644 * 1 2 3 23 23 H 1.08993 * 109.47389 * 29.97702 * 1 2 3 24 24 H 1.09000 * 109.47339 * 149.97633 * 1 2 3 25 25 H 1.08000 * 125.20145 * 0.05876 * 3 2 1 26 26 H 1.08000 * 125.20371 * 180.17673 * 5 4 3 27 27 H 1.08998 * 109.47129 * 139.70953 * 7 6 5 28 28 H 1.09002 * 109.46506 * 19.70396 * 7 6 5 29 29 H 0.96995 * 119.99906 * 359.97438 * 8 7 6 30 30 H 1.09004 * 109.47084 * 299.99675 * 13 11 9 31 31 H 1.08994 * 109.47175 * 60.00247 * 13 11 9 32 32 H 1.09001 * 109.47192 * 180.02562 * 13 11 9 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2245 1.1246 0.0000 4 16 3.9385 0.7305 -0.0007 5 6 3.5736 -0.9901 0.0042 6 6 2.2516 -1.1670 -0.0006 7 6 1.6165 -2.5337 -0.0002 8 7 1.1923 -2.8754 -1.3602 9 6 0.5954 -4.0593 -1.6023 10 8 0.4099 -4.8418 -0.6946 11 6 0.1585 -4.4105 -3.0012 12 1 1.0248 -4.4121 -3.6628 13 6 -0.8569 -3.3772 -3.4930 14 6 -0.4753 -5.7778 -3.0010 15 1 -0.5542 -6.3363 -2.0800 16 6 -0.9600 -6.3131 -4.1756 17 7 -0.8642 -5.6328 -5.2970 18 14 -1.7525 -8.0046 -4.1739 19 1 -3.2102 -7.8681 -3.9253 20 1 -1.5339 -8.6550 -5.4909 21 1 -1.1437 -8.8356 -3.1044 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5134 24 1 -0.3634 -0.8898 -0.5142 25 1 1.8154 2.1241 0.0009 26 1 4.3077 -1.7822 0.0083 27 1 0.7500 -2.5314 0.6610 28 1 2.3395 -3.2700 0.3507 29 1 1.3410 -2.2497 -2.0862 30 1 -1.7232 -3.3756 -2.8314 31 1 -0.3981 -2.3885 -3.4932 32 1 -1.1732 -3.6315 -4.5046 33 1 -1.2049 -6.0096 -6.1234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597584098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:25 Heat of formation + Delta-G solvation = -37.122834 kcal Electronic energy + Delta-G solvation = -16228.503210 eV Core-core repulsion = 13572.647159 eV Total energy + Delta-G solvation = -2655.856051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78712 -39.45029 -35.76993 -35.30220 -32.67949 -31.86619 -29.26101 -27.21182 -26.74846 -24.24057 -23.09333 -21.11367 -19.24797 -18.58413 -18.27317 -17.63542 -16.85660 -16.39881 -15.96248 -15.68486 -14.88919 -14.61778 -14.49589 -14.25358 -13.91239 -13.50109 -13.34587 -12.98044 -12.93510 -12.80036 -12.64844 -12.57134 -12.47623 -12.18186 -12.00259 -11.70190 -11.02563 -10.62536 -10.36086 -9.97538 -9.66075 -9.20507 -8.13552 -6.23950 0.02956 0.73635 1.03677 1.41957 1.42436 1.51499 1.55526 1.94596 2.42414 2.72885 3.15936 3.83879 3.93541 4.25782 4.36159 4.44185 4.56369 4.67170 4.74714 4.77624 4.81381 4.96950 5.03805 5.07344 5.17215 5.50396 5.51300 5.55798 5.60442 5.76330 5.95965 6.23039 6.74585 6.87620 7.41309 7.55036 8.92174 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.043930 B = 0.004446 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.229641 B = 6296.131176 C = 6384.741163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C -0.218 4.218 4 S 0.127 5.873 5 C -0.198 4.198 6 C -0.127 4.127 7 C 0.184 3.816 8 N -0.719 5.719 9 C 0.523 3.477 10 O -0.587 6.587 11 C 0.024 3.976 12 H 0.040 0.960 13 C -0.118 4.118 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.956 3.044 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.279 1.279 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.187 0.813 26 H 0.175 0.825 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.407 0.593 30 H 0.024 0.976 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.483 16.374 8.357 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.353 4.353 4 S 0.392 5.608 5 C -0.335 4.335 6 C -0.140 4.140 7 C 0.058 3.942 8 N -0.372 5.372 9 C 0.312 3.688 10 O -0.467 6.467 11 C 0.003 3.997 12 H 0.057 0.943 13 C -0.176 4.176 14 C -0.567 4.567 15 H 0.067 0.933 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.200 1.200 21 H -0.204 1.204 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.073 0.927 25 H 0.204 0.796 26 H 0.193 0.807 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.243 0.757 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.695 16.696 8.825 20.790 hybrid contribution -1.572 -1.660 -0.397 2.321 sum 7.123 15.035 8.428 18.650 Atomic orbital electron populations 1.20578 0.89267 1.03120 1.02821 1.18919 0.98045 0.91457 1.03079 1.25702 0.95868 1.02903 1.10827 1.84099 1.05999 0.98559 1.72103 1.25798 0.98973 1.00828 1.07890 1.18775 0.93312 0.94949 1.06970 1.19748 0.98302 0.91792 0.84344 1.46050 1.61684 1.18847 1.10580 1.21536 0.75016 0.80145 0.92135 1.90507 1.57022 1.51085 1.48070 1.18808 0.96532 0.96197 0.88170 0.94263 1.21540 0.97749 0.95651 1.02648 1.21295 1.39054 1.01774 0.94546 0.93313 1.25598 0.96270 1.01097 0.95002 1.69955 1.47232 1.38732 0.99150 0.85592 0.78870 0.80064 0.77339 1.19946 1.20013 1.20378 0.90586 0.89872 0.92702 0.79612 0.80724 0.91775 0.91911 0.75703 0.95723 0.93172 0.91114 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.60 71.23 0.68 -1.32 16 2 C -0.10 -2.20 5.80 -20.92 -0.12 -2.32 16 3 C -0.22 -3.80 10.98 66.72 0.73 -3.07 16 4 S 0.13 2.13 23.34 -56.49 -1.32 0.82 16 5 C -0.20 -4.11 10.95 66.72 0.73 -3.38 16 6 C -0.13 -3.04 5.17 -20.92 -0.11 -3.14 16 7 C 0.18 5.52 5.12 85.63 0.44 5.96 16 8 N -0.72 -24.98 5.18 -466.78 -2.42 -27.39 16 9 C 0.52 24.21 7.15 87.66 0.63 24.84 16 10 O -0.59 -31.59 15.46 -3.02 -0.05 -31.63 16 11 C 0.02 1.23 2.64 -12.29 -0.03 1.19 16 12 H 0.04 2.07 8.14 -2.38 -0.02 2.06 16 13 C -0.12 -5.39 8.86 71.98 0.64 -4.75 16 14 C -0.53 -30.86 8.38 25.60 0.21 -30.64 16 15 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 16 C 0.02 1.09 5.30 84.66 0.45 1.54 16 17 N -0.91 -51.41 11.31 21.45 0.24 -51.17 16 18 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 1.36 8.12 -2.39 -0.02 1.35 16 24 H 0.05 1.35 7.12 -2.39 -0.02 1.33 16 25 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 27 H 0.06 2.03 7.69 -2.39 -0.02 2.01 16 28 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 29 H 0.41 12.49 7.88 -92.71 -0.73 11.76 16 30 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 32 H 0.07 3.58 6.06 -2.39 -0.01 3.57 16 33 H 0.26 14.12 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -66.46 294.20 3.13 -63.33 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.39 Total: 13.96 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 4.25 Total: -15.11 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.17 Total: -78.56 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.05 Total: -31.63 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.32 Total: 0.82 kcal Total: -66.46 3.13 -63.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597584098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.212 kcal (2) G-P(sol) polarization free energy of solvation -66.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds