Wall clock time and date at job start Mon Mar 30 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46472 * 2 1 4 4 N 1.46505 * 109.47224 * 119.99521 * 2 1 3 5 5 C 1.34778 * 119.99943 * 275.00355 * 4 2 1 6 6 O 1.21277 * 120.00059 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99637 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47120 * 299.99695 * 7 5 4 9 9 C 1.52997 * 109.47466 * 59.99942 * 7 5 4 10 10 C 1.50708 * 109.47025 * 180.02562 * 7 5 4 11 11 H 1.08000 * 119.99723 * 359.97438 * 10 7 5 12 12 C 1.37873 * 119.99930 * 179.97438 * 10 7 5 13 13 N 1.31509 * 120.00195 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99968 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46680 * 60.00159 * 14 12 10 16 16 H 1.48492 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46944 * 300.00675 * 14 12 10 18 18 C 1.50699 * 109.47264 * 239.99868 * 2 1 3 19 19 C 1.38423 * 122.53959 * 99.99931 * 18 2 1 20 20 C 1.33390 * 114.92076 * 179.97438 * 19 18 2 21 21 S 1.75886 * 109.59202 * 0.02562 * 20 19 18 22 22 C 1.33392 * 122.53879 * 279.70469 * 18 2 1 23 23 H 1.08996 * 109.47469 * 299.99928 * 1 2 3 24 24 H 1.08993 * 109.47326 * 60.00755 * 1 2 3 25 25 H 1.09006 * 109.46801 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99611 * 94.99857 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 7 5 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 7 5 29 29 H 1.09004 * 109.47261 * 179.97438 * 9 7 5 30 30 H 0.97006 * 120.00358 * 179.97438 * 13 12 10 31 31 H 1.08002 * 122.53931 * 359.95612 * 19 18 2 32 32 H 1.08000 * 125.20221 * 179.97438 * 20 19 18 33 33 H 1.08001 * 125.20008 * 0.03122 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6499 -0.7283 3.5875 8 1 1.9777 -1.5506 3.8326 9 6 4.0527 -1.2782 3.3215 10 6 2.6999 0.2400 4.7413 11 1 2.3980 1.2670 4.5978 12 6 3.1308 -0.1853 5.9800 13 7 3.4988 -1.4358 6.1545 14 14 3.1934 1.0150 7.4100 15 1 1.8320 1.5491 7.6677 16 1 3.6888 0.3152 8.6223 17 1 4.1096 2.1351 7.0763 18 6 2.0324 -0.7104 -1.2304 19 6 2.4716 -0.0324 -2.3545 20 6 2.8839 -0.8116 -3.3555 21 16 2.7237 -2.5009 -2.8925 22 6 2.0928 -2.0402 -1.3167 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.2490 -1.6317 1.1527 27 1 4.7248 -0.4559 3.0763 28 1 4.0161 -1.9786 2.4871 29 1 4.4166 -1.7915 4.2115 30 1 3.8024 -1.7349 7.0259 31 1 2.4796 1.0458 -2.4164 32 1 3.2580 -0.4592 -4.3054 33 1 1.7971 -2.7286 -0.5389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597626707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:00 Heat of formation + Delta-G solvation = -33.206219 kcal Electronic energy + Delta-G solvation = -16325.098904 eV Core-core repulsion = 13669.412690 eV Total energy + Delta-G solvation = -2655.686214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92386 -39.18033 -35.84533 -35.60129 -32.87875 -31.07636 -29.85997 -27.19336 -25.88895 -24.70935 -22.61571 -21.07042 -19.73481 -18.73693 -18.30784 -17.59182 -16.99731 -16.47228 -15.86688 -15.48786 -14.87116 -14.75782 -14.48107 -13.94230 -13.73766 -13.50637 -13.37351 -13.28769 -12.95502 -12.80163 -12.65931 -12.58780 -12.32486 -12.17216 -11.99385 -11.56978 -11.04444 -10.60154 -10.31032 -10.01913 -9.71914 -9.27665 -8.14004 -6.24353 0.08151 0.76650 1.06718 1.41874 1.43438 1.51898 1.68316 1.96424 2.38155 2.57131 3.15603 3.77446 4.08481 4.22825 4.34196 4.41173 4.50936 4.68552 4.74484 4.77788 4.89409 4.95078 5.01667 5.13079 5.21667 5.37387 5.48325 5.50285 5.69041 5.76704 5.94738 6.22082 6.74184 6.87102 7.41012 7.55879 8.91650 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.040926 B = 0.004755 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.002679 B = 5887.392117 C = 6246.522514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.199 3.801 3 H 0.071 0.929 4 N -0.720 5.720 5 C 0.524 3.476 6 O -0.585 6.585 7 C 0.024 3.976 8 H 0.041 0.959 9 C -0.118 4.118 10 C -0.529 4.529 11 H 0.049 0.951 12 C 0.020 3.980 13 N -0.911 5.911 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.274 1.274 17 H -0.277 1.277 18 C -0.113 4.113 19 C -0.143 4.143 20 C -0.206 4.206 21 S 0.122 5.878 22 C -0.216 4.216 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.406 0.594 27 H 0.021 0.979 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.149 0.851 32 H 0.190 0.810 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -4.084 -19.133 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.092 3.908 3 H 0.090 0.910 4 N -0.374 5.374 5 C 0.313 3.687 6 O -0.464 6.464 7 C 0.003 3.997 8 H 0.059 0.941 9 C -0.177 4.177 10 C -0.567 4.567 11 H 0.067 0.933 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.781 3.219 15 H -0.202 1.202 16 H -0.199 1.199 17 H -0.202 1.202 18 C -0.126 4.126 19 C -0.173 4.173 20 C -0.342 4.342 21 S 0.386 5.614 22 C -0.352 4.352 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.242 0.758 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.166 0.834 32 H 0.207 0.793 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.691 -4.767 -19.702 20.341 hybrid contribution -0.164 1.578 1.734 2.350 sum -1.855 -3.190 -17.968 18.343 Atomic orbital electron populations 1.22077 0.93745 1.02762 1.02069 1.19431 0.94455 0.95637 0.81250 0.91042 1.46177 1.68129 1.14219 1.08853 1.21506 0.75025 0.86889 0.85281 1.90498 1.51743 1.18422 1.85741 1.18808 0.95534 0.95756 0.89629 0.94095 1.21548 0.96273 0.98743 1.01094 1.21260 1.44228 0.96676 0.94571 0.93302 1.25593 0.94703 0.96942 1.00712 1.69940 1.44730 1.16111 1.24269 0.85655 0.78418 0.79141 0.78681 1.20154 1.19933 1.20214 1.18944 1.03637 0.93526 0.96466 1.20174 1.02371 1.02086 0.92675 1.25918 1.08101 0.95613 1.04531 1.84143 1.62164 1.07057 1.08054 1.25612 1.08686 0.98573 1.02297 0.94200 0.89901 0.91348 0.75765 0.95996 0.93202 0.91029 0.92612 0.83357 0.79263 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.47 71.98 0.68 -3.33 16 2 C 0.20 5.94 2.87 44.24 0.13 6.07 16 3 H 0.07 2.44 7.52 -2.39 -0.02 2.42 16 4 N -0.72 -24.99 4.94 -446.09 -2.20 -27.19 16 5 C 0.52 24.30 7.11 87.66 0.62 24.92 16 6 O -0.58 -31.35 15.12 -3.02 -0.05 -31.39 16 7 C 0.02 1.22 2.64 -12.29 -0.03 1.18 16 8 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 9 C -0.12 -5.49 8.87 71.98 0.64 -4.85 16 10 C -0.53 -30.95 8.37 25.60 0.21 -30.73 16 11 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 12 C 0.02 1.11 5.30 84.65 0.45 1.55 16 13 N -0.91 -51.46 11.32 21.44 0.24 -51.22 16 14 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 C -0.11 -2.68 4.86 -20.92 -0.10 -2.78 16 19 C -0.14 -2.95 9.95 21.22 0.21 -2.74 16 20 C -0.21 -3.45 11.23 66.72 0.75 -2.70 16 21 S 0.12 2.08 23.34 -56.49 -1.32 0.76 16 22 C -0.22 -4.52 10.21 66.72 0.68 -3.83 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 26 H 0.41 12.04 6.61 -92.71 -0.61 11.43 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 29 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 30 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.17 3.21 7.32 -2.91 -0.02 3.19 16 Total: -1.00 -67.05 293.43 3.45 -63.61 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.50 Total: 15.40 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.24 Total: -17.24 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.96 Total: -78.41 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.05 Total: -31.39 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.76 kcal Total: -67.05 3.45 -63.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597626707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.400 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds