Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 H 1.08003 * 120.00271 * 119.99914 * 4 2 1 6 6 C 1.37886 * 119.99979 * 300.00171 * 4 2 1 7 7 N 1.31509 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46938 * 60.00034 * 8 6 4 10 10 H 1.48500 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46946 * 299.99979 * 8 6 4 12 12 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 13 13 O 1.21277 * 120.00304 * 239.99974 * 12 2 1 14 14 N 1.34778 * 119.99637 * 60.00346 * 12 2 1 15 15 C 1.46505 * 119.99943 * 179.97438 * 14 12 2 16 16 H 1.08998 * 109.46595 * 325.00125 * 15 14 12 17 17 C 1.52991 * 109.47005 * 84.99743 * 15 14 12 18 18 C 1.50701 * 109.46932 * 205.00116 * 15 14 12 19 19 C 1.38427 * 122.53598 * 140.00337 * 18 15 14 20 20 C 1.33385 * 114.91732 * 179.97438 * 19 18 15 21 21 S 1.75881 * 109.59549 * 359.97438 * 20 19 18 22 22 C 1.33388 * 122.53980 * 319.70398 * 18 15 14 23 23 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 26 26 H 0.96999 * 120.00100 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00145 * 0.02562 * 14 12 2 28 28 H 1.09001 * 109.47385 * 179.97438 * 17 15 14 29 29 H 1.08998 * 109.47894 * 300.00081 * 17 15 14 30 30 H 1.09007 * 109.47302 * 60.00591 * 17 15 14 31 31 H 1.07998 * 122.54094 * 359.97438 * 19 18 15 32 32 H 1.08004 * 125.20408 * 179.97438 * 20 19 18 33 33 H 1.07998 * 125.20233 * 0.03345 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1956 -0.9403 -3.6507 16 1 3.1950 -1.3321 -3.4611 17 6 1.2522 -2.0944 -3.9947 18 6 2.2462 0.0283 -4.8042 19 6 3.2813 0.0382 -5.7232 20 6 3.1723 0.9585 -6.6825 21 16 1.6946 1.8830 -6.4478 22 6 1.2940 0.9370 -5.0202 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1618 3.4844 27 1 1.1495 0.5389 -2.5435 28 1 1.6155 -2.6078 -4.8850 29 1 1.2155 -2.7950 -3.1605 30 1 0.2528 -1.7026 -4.1843 31 1 4.1141 -0.6473 -5.6676 32 1 3.8828 1.1125 -7.4812 33 1 0.4127 1.0723 -4.4108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597626708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = -14.040587 kcal Electronic energy + Delta-G solvation = -16316.822114 eV Core-core repulsion = 13661.966985 eV Total energy + Delta-G solvation = -2654.855130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.45479 -37.89709 -34.31985 -33.68734 -31.04757 -29.57709 -28.88795 -25.12022 -24.80793 -23.07857 -21.30383 -19.43768 -18.73980 -17.64334 -16.47345 -16.00286 -15.42160 -14.67550 -14.27338 -14.13012 -13.66123 -13.09906 -13.02640 -12.73844 -12.56751 -12.43750 -12.14281 -11.67891 -11.44188 -11.27038 -10.97963 -10.70891 -10.70201 -10.59019 -10.22860 -9.93312 -8.96156 -8.91290 -8.62579 -8.51650 -8.36917 -8.27448 -6.00412 -4.03369 0.92385 1.57849 1.89346 2.60896 3.38221 3.40457 3.46038 3.77067 3.96383 4.50017 4.79613 4.94274 5.27128 5.32758 5.35189 5.53806 5.59627 5.84131 5.85657 6.05182 6.20683 6.30077 6.38614 6.52062 6.63819 6.85198 6.95219 7.14268 7.50536 7.78146 8.01858 8.17922 8.48252 9.05318 9.27727 9.62030 11.07218 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.004690 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.884484 B = 5968.631155 C = 6227.059825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.741 5.741 15 C 0.199 3.801 16 H 0.092 0.908 17 C -0.154 4.154 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.214 4.214 21 S 0.088 5.912 22 C -0.204 4.204 23 H 0.010 0.990 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.261 0.739 27 H 0.394 0.606 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 1.961 -17.842 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.422 6.422 14 N -0.395 5.395 15 C 0.091 3.909 16 H 0.110 0.890 17 C -0.213 4.213 18 C -0.114 4.114 19 C -0.154 4.154 20 C -0.349 4.349 21 S 0.352 5.648 22 C -0.340 4.340 23 H 0.030 0.970 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.228 0.772 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.503 2.564 -18.380 18.564 hybrid contribution 0.670 -1.100 1.433 1.926 sum 0.167 1.464 -16.947 17.011 Atomic orbital electron populations 1.21736 0.96586 0.99775 1.00833 1.18868 0.94113 0.96831 0.89391 0.93076 1.21109 1.30954 1.12789 0.89003 0.90837 1.24950 0.95138 0.95073 0.99090 1.69860 1.37158 1.23082 1.23590 0.86511 0.79281 0.79707 0.81657 1.20213 1.21408 1.20211 1.21964 0.78260 0.84245 0.84400 1.90520 1.38005 1.26903 1.86733 1.46438 1.55355 1.32479 1.05228 1.19371 0.99471 0.90027 0.81984 0.89028 1.22141 0.99185 0.98194 1.01761 1.19147 0.94812 0.98744 0.98664 1.20078 0.99973 1.00468 0.94853 1.25556 1.02240 1.02031 1.05072 1.84205 1.18473 1.37207 1.24950 1.25415 1.04616 1.01716 1.02224 0.97049 0.94998 0.88876 0.92949 0.77187 0.92213 0.91414 0.92630 0.84041 0.81904 0.81771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.07 2.21 6.75 -52.48 -0.35 1.86 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.89 7.11 -10.99 -0.08 11.81 16 13 O -0.55 -14.15 15.12 5.56 0.08 -14.07 16 14 N -0.74 -13.00 4.94 -54.94 -0.27 -13.27 16 15 C 0.20 3.02 2.87 -69.08 -0.20 2.82 16 16 H 0.09 1.53 7.52 -51.93 -0.39 1.14 16 17 C -0.15 -2.15 9.47 37.15 0.35 -1.80 16 18 C -0.10 -1.28 4.86 -106.25 -0.52 -1.80 16 19 C -0.12 -1.39 9.95 -41.21 -0.41 -1.80 16 20 C -0.21 -2.11 11.23 29.04 0.33 -1.79 16 21 S 0.09 0.88 23.34 -107.50 -2.51 -1.63 16 22 C -0.20 -2.37 10.21 29.04 0.30 -2.07 16 23 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.39 6.12 6.64 -40.82 -0.27 5.85 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.16 1.74 7.35 -52.49 -0.39 1.35 16 LS Contribution 293.48 15.07 4.42 4.42 Total: -1.00 -30.89 293.48 -7.40 -38.29 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.20 Total: 3.87 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.53 Total: -9.86 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.36 Total: -37.96 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.89 -7.40 -38.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597626708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.247 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds