Wall clock time and date at job start Mon Mar 30 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.33193 * 2 1 4 4 C 1.54481 * 110.36968 * 237.75106 * 2 1 3 5 5 C 1.54509 * 104.06281 * 217.19112 * 4 2 1 6 6 H 1.08999 * 110.51179 * 118.64276 * 5 4 2 7 7 C 1.50691 * 110.51195 * 241.21872 * 5 4 2 8 8 N 1.28801 * 124.99386 * 238.54376 * 7 5 4 9 9 C 1.33649 * 116.05914 * 180.02562 * 8 7 5 10 10 C 1.41161 * 122.85796 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99728 * 174.01200 * 10 9 8 12 12 C 1.39718 * 120.00092 * 354.00951 * 10 9 8 13 13 N 1.31021 * 120.00123 * 6.15954 * 12 10 9 14 14 Si 1.86798 * 119.99827 * 186.16544 * 12 10 9 15 15 H 1.48500 * 109.47748 * 59.99478 * 14 12 10 16 16 H 1.48501 * 109.47085 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46867 * 299.99313 * 14 12 10 18 18 C 1.37698 * 114.27716 * 359.97438 * 9 8 7 19 19 S 1.70991 * 108.83952 * 359.73269 * 18 9 8 20 20 C 1.54482 * 104.06253 * 0.02562 * 5 4 2 21 21 H 1.08997 * 110.37236 * 142.92106 * 20 5 4 22 22 C 1.53004 * 110.37119 * 265.14774 * 20 5 4 23 23 O 1.44417 * 110.37020 * 122.25432 * 2 1 3 24 24 H 1.08995 * 109.46892 * 180.70137 * 1 2 3 25 25 H 1.08998 * 109.46980 * 300.70289 * 1 2 3 26 26 H 1.09004 * 109.46883 * 60.69654 * 1 2 3 27 27 H 1.09002 * 110.51277 * 335.83141 * 4 2 1 28 28 H 1.09002 * 110.51335 * 98.40828 * 4 2 1 29 29 H 0.96995 * 119.99997 * 180.02562 * 13 12 10 30 30 H 1.08003 * 125.57604 * 179.97438 * 18 9 8 31 31 H 1.09005 * 109.46939 * 60.00038 * 22 20 5 32 32 H 1.08996 * 109.47077 * 179.97438 * 22 20 5 33 33 H 1.08995 * 109.46925 * 300.00241 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2248 5 6 3.3178 -1.5050 -0.6876 6 1 3.1955 -2.5845 -0.7759 7 6 4.5521 -1.0527 -1.4243 8 7 5.3416 -1.8253 -2.0867 9 6 6.3870 -1.2335 -2.6724 10 6 7.3420 -1.9429 -3.4323 11 1 8.1137 -1.4075 -3.9653 12 6 7.2887 -3.3377 -3.4949 13 7 6.2854 -3.9801 -2.9497 14 14 8.6482 -4.2865 -4.3556 15 1 9.9456 -4.0065 -3.6896 16 1 8.3583 -5.7412 -4.2841 17 1 8.7210 -3.8662 -5.7780 18 6 6.4532 0.1272 -2.4714 19 16 5.1220 0.6090 -1.5125 20 6 3.3870 -1.0886 0.7985 21 1 3.7257 -1.9239 1.4112 22 6 4.3205 0.1111 0.9724 23 8 2.0328 -0.7225 1.1449 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 -0.3633 0.5030 -0.8962 27 1 1.3276 -1.4903 -1.5788 28 1 2.3407 -0.0820 -2.0226 29 1 6.2486 -4.9484 -2.9928 30 1 7.2183 0.7832 -2.8596 31 1 3.9470 0.9502 0.3854 32 1 4.3582 0.3926 2.0247 33 1 5.3209 -0.1544 0.6309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686426175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:16 Heat of formation + Delta-G solvation = -13.267972 kcal Electronic energy + Delta-G solvation = -16828.487481 eV Core-core repulsion = 14173.665854 eV Total energy + Delta-G solvation = -2654.821627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74368 -37.64487 -33.54412 -32.46226 -32.21618 -29.01083 -28.32396 -25.60448 -24.61761 -22.87726 -20.67672 -20.23593 -18.50113 -17.63576 -16.19948 -15.73090 -15.15881 -14.86712 -14.61884 -14.06171 -13.40478 -13.06815 -12.91331 -12.47496 -12.27282 -12.05675 -11.68169 -11.60617 -11.47567 -11.38285 -11.11657 -10.76285 -10.72328 -10.58343 -10.37019 -10.23331 -9.60468 -9.42518 -9.19262 -8.05057 -7.87524 -7.21408 -6.54766 -4.34427 2.25711 2.88231 3.06353 3.08814 3.11598 3.68199 4.00207 4.06711 4.25553 4.91863 4.93846 5.00808 5.18686 5.36740 5.46376 5.52887 5.56108 5.71012 5.80570 5.90444 6.00583 6.13485 6.21766 6.25784 6.33119 6.51506 6.62473 6.79357 7.10378 7.12514 7.25230 7.51611 8.18333 8.54432 8.88175 9.58752 10.33208 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035712 B = 0.006336 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.853882 B = 4417.876426 C = 4748.325754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.142 4.142 5 C -0.031 4.031 6 H 0.105 0.895 7 C 0.060 3.940 8 N -0.392 5.392 9 C 0.224 3.776 10 C -0.434 4.434 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.753 5.753 14 Si 0.911 3.089 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.266 1.266 18 C -0.467 4.467 19 S -0.024 6.024 20 C 0.082 3.918 21 H 0.104 0.896 22 C -0.181 4.181 23 O -0.368 6.368 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.274 0.726 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 3.939 4.826 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.181 4.181 5 C -0.054 4.054 6 H 0.123 0.877 7 C -0.223 4.223 8 N -0.105 5.105 9 C 0.102 3.898 10 C -0.469 4.469 11 H 0.101 0.899 12 C -0.150 4.150 13 N -0.376 5.376 14 Si 0.735 3.265 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.606 4.606 19 S 0.224 5.776 20 C 0.023 3.977 21 H 0.122 0.878 22 C -0.240 4.240 23 O -0.288 6.288 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.152 0.848 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.230 4.011 5.340 10.599 hybrid contribution 1.616 -0.825 -1.282 2.222 sum -6.614 3.186 4.058 8.388 Atomic orbital electron populations 1.21793 0.93523 1.02743 1.02080 1.22973 0.94795 0.95802 0.85368 0.91337 1.23104 0.96710 0.99840 0.98457 1.20956 0.89741 1.01727 0.92975 0.87684 1.27454 1.00676 0.90711 1.03491 1.67356 1.02887 1.33553 1.06749 1.17976 0.90618 0.87958 0.93250 1.18920 1.10798 0.90864 1.26275 0.89933 1.25978 0.96148 0.98342 0.94514 1.70093 1.26420 1.09050 1.32073 0.86338 0.81505 0.78277 0.80369 1.19002 1.20309 1.19052 1.25343 1.10723 0.99343 1.25166 1.82858 1.26132 1.15909 1.52687 1.22947 0.82903 0.97503 0.94346 0.87823 1.22672 1.01497 0.98294 1.01491 1.89135 1.27032 1.74407 1.38190 0.91840 0.92147 0.91311 0.90264 0.89957 0.91534 0.84772 0.91433 0.92241 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.52 37.16 0.35 -1.23 16 2 C 0.07 0.95 3.49 -25.95 -0.09 0.86 16 3 H 0.07 0.94 7.23 -51.93 -0.38 0.56 16 4 C -0.14 -2.20 6.20 -25.16 -0.16 -2.35 16 5 C -0.03 -0.57 3.56 -90.21 -0.32 -0.89 16 6 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 7 C 0.06 1.36 5.37 -13.55 -0.07 1.28 16 8 N -0.39 -10.53 8.49 -8.35 -0.07 -10.60 16 9 C 0.22 6.25 6.46 -86.16 -0.56 5.70 16 10 C -0.43 -12.07 9.23 -37.92 -0.35 -12.42 16 11 H 0.08 2.19 7.85 -52.49 -0.41 1.77 16 12 C 0.07 1.89 5.49 -17.34 -0.10 1.80 16 13 N -0.75 -20.37 11.72 55.54 0.65 -19.72 16 14 Si 0.91 19.23 29.56 -169.99 -5.03 14.20 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.47 -11.95 10.98 30.54 0.34 -11.62 16 19 S -0.02 -0.52 17.88 -107.50 -1.92 -2.44 16 20 C 0.08 1.34 4.13 -25.95 -0.11 1.23 16 21 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 22 C -0.18 -2.95 7.59 37.16 0.28 -2.67 16 23 O -0.37 -5.79 11.10 -35.23 -0.39 -6.18 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.11 7.87 -51.93 -0.41 0.70 16 28 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 29 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 30 H 0.13 3.32 8.06 -52.48 -0.42 2.89 16 31 H 0.07 1.09 5.07 -41.54 -0.21 0.88 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.60 5.91 -44.03 -0.26 1.34 16 LS Contribution 278.77 15.07 4.20 4.20 Total: -1.00 -29.51 278.77 -7.49 -37.00 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.15 Total: 3.85 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -0.78 Total: -20.31 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.58 Total: -30.31 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.39 Total: -6.18 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -1.92 Total: -2.44 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.51 -7.49 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686426175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.731 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds