Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.33193 * 2 1 4 4 C 1.54481 * 110.36968 * 237.75106 * 2 1 3 5 5 C 1.54509 * 104.06281 * 217.19112 * 4 2 1 6 6 H 1.08999 * 110.51179 * 118.64276 * 5 4 2 7 7 C 1.50691 * 110.51195 * 241.21872 * 5 4 2 8 8 N 1.28801 * 124.99386 * 238.54376 * 7 5 4 9 9 C 1.33649 * 116.05914 * 180.02562 * 8 7 5 10 10 C 1.41161 * 122.85796 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99728 * 174.01200 * 10 9 8 12 12 C 1.39718 * 120.00092 * 354.00951 * 10 9 8 13 13 N 1.31021 * 120.00123 * 6.15954 * 12 10 9 14 14 Si 1.86798 * 119.99827 * 186.16544 * 12 10 9 15 15 H 1.48500 * 109.47748 * 59.99478 * 14 12 10 16 16 H 1.48501 * 109.47085 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46867 * 299.99313 * 14 12 10 18 18 C 1.37698 * 114.27716 * 359.97438 * 9 8 7 19 19 S 1.70991 * 108.83952 * 359.73269 * 18 9 8 20 20 C 1.54482 * 104.06253 * 0.02562 * 5 4 2 21 21 H 1.08997 * 110.37236 * 142.92106 * 20 5 4 22 22 C 1.53004 * 110.37119 * 265.14774 * 20 5 4 23 23 O 1.44417 * 110.37020 * 122.25432 * 2 1 3 24 24 H 1.08995 * 109.46892 * 180.70137 * 1 2 3 25 25 H 1.08998 * 109.46980 * 300.70289 * 1 2 3 26 26 H 1.09004 * 109.46883 * 60.69654 * 1 2 3 27 27 H 1.09002 * 110.51277 * 335.83141 * 4 2 1 28 28 H 1.09002 * 110.51335 * 98.40828 * 4 2 1 29 29 H 0.96995 * 119.99997 * 180.02562 * 13 12 10 30 30 H 1.08003 * 125.57604 * 179.97438 * 18 9 8 31 31 H 1.09005 * 109.46939 * 60.00038 * 22 20 5 32 32 H 1.08996 * 109.47077 * 179.97438 * 22 20 5 33 33 H 1.08995 * 109.46925 * 300.00241 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2248 5 6 3.3178 -1.5050 -0.6876 6 1 3.1955 -2.5845 -0.7759 7 6 4.5521 -1.0527 -1.4243 8 7 5.3416 -1.8253 -2.0867 9 6 6.3870 -1.2335 -2.6724 10 6 7.3420 -1.9429 -3.4323 11 1 8.1137 -1.4075 -3.9653 12 6 7.2887 -3.3377 -3.4949 13 7 6.2854 -3.9801 -2.9497 14 14 8.6482 -4.2865 -4.3556 15 1 9.9456 -4.0065 -3.6896 16 1 8.3583 -5.7412 -4.2841 17 1 8.7210 -3.8662 -5.7780 18 6 6.4532 0.1272 -2.4714 19 16 5.1220 0.6090 -1.5125 20 6 3.3870 -1.0886 0.7985 21 1 3.7257 -1.9239 1.4112 22 6 4.3205 0.1111 0.9724 23 8 2.0328 -0.7225 1.1449 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 -0.3633 0.5030 -0.8962 27 1 1.3276 -1.4903 -1.5788 28 1 2.3407 -0.0820 -2.0226 29 1 6.2486 -4.9484 -2.9928 30 1 7.2183 0.7832 -2.8596 31 1 3.9470 0.9502 0.3854 32 1 4.3582 0.3926 2.0247 33 1 5.3209 -0.1544 0.6309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686426175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = -31.798013 kcal Electronic energy + Delta-G solvation = -16829.291003 eV Core-core repulsion = 14173.665854 eV Total energy + Delta-G solvation = -2655.625149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07934 -39.49778 -35.35650 -34.01077 -33.38039 -30.75905 -29.66892 -27.59546 -25.90534 -24.49789 -21.99072 -21.78502 -20.21737 -19.52688 -17.57947 -17.11924 -16.99030 -16.52831 -15.95697 -15.64037 -15.03403 -14.66137 -14.22351 -13.93041 -13.59561 -13.43165 -13.25664 -13.04400 -12.95105 -12.82161 -12.72523 -12.49596 -12.29372 -11.92143 -11.85299 -11.63313 -11.34320 -11.11648 -10.67620 -9.92285 -9.75511 -9.08080 -8.47702 -6.37712 0.38933 1.08513 1.35700 1.40248 1.48638 1.78344 2.22130 2.34316 2.84114 3.40182 3.43912 3.68536 3.77646 3.93747 4.15824 4.29116 4.39359 4.47459 4.66149 4.68137 4.83952 4.92536 4.98979 4.99458 5.10341 5.12081 5.16983 5.27766 5.33500 5.35015 5.51859 5.90021 6.14648 6.54190 6.87196 7.68107 8.41858 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035712 B = 0.006336 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.853882 B = 4417.876426 C = 4748.325754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.074 0.926 4 C -0.138 4.138 5 C -0.038 4.038 6 H 0.094 0.906 7 C 0.066 3.934 8 N -0.441 5.441 9 C 0.194 3.806 10 C -0.477 4.477 11 H 0.080 0.920 12 C 0.029 3.971 13 N -0.786 5.786 14 Si 0.989 3.011 15 H -0.261 1.261 16 H -0.265 1.265 17 H -0.260 1.260 18 C -0.503 4.503 19 S 0.053 5.947 20 C 0.088 3.912 21 H 0.110 0.890 22 C -0.177 4.177 23 O -0.369 6.369 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.280 0.720 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 4.290 5.482 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.092 0.908 4 C -0.177 4.177 5 C -0.062 4.062 6 H 0.112 0.888 7 C -0.217 4.217 8 N -0.156 5.156 9 C 0.071 3.929 10 C -0.511 4.511 11 H 0.098 0.902 12 C -0.191 4.191 13 N -0.409 5.409 14 Si 0.809 3.191 15 H -0.186 1.186 16 H -0.189 1.189 17 H -0.184 1.184 18 C -0.641 4.641 19 S 0.303 5.697 20 C 0.029 3.971 21 H 0.128 0.872 22 C -0.236 4.236 23 O -0.289 6.289 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.374 4.402 6.008 11.973 hybrid contribution 1.863 -0.813 -1.406 2.472 sum -7.512 3.589 4.602 9.512 Atomic orbital electron populations 1.21808 0.91005 1.03336 1.03581 1.23146 0.96759 0.95383 0.83706 0.90786 1.23123 0.95596 0.99944 0.99041 1.21154 0.89202 1.01515 0.94285 0.88796 1.28195 1.00599 0.91375 1.01521 1.67370 1.03903 1.35107 1.09176 1.18385 0.91464 0.89042 0.93979 1.19270 1.11659 0.92386 1.27792 0.90207 1.26886 0.98620 0.98635 0.94915 1.70185 1.28161 1.09601 1.32980 0.85167 0.77865 0.76999 0.79072 1.18558 1.18939 1.18388 1.25694 1.12838 0.99260 1.26281 1.82374 1.23244 1.13881 1.50235 1.22859 0.83645 0.97787 0.92836 0.87183 1.22578 0.99814 0.98111 1.03069 1.89148 1.26254 1.74657 1.38824 0.91723 0.91064 0.89460 0.88765 0.90711 0.90932 0.85002 0.91327 0.89735 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.52 71.99 0.69 -1.91 16 2 C 0.07 1.67 3.49 31.10 0.11 1.78 16 3 H 0.07 1.78 7.23 -2.39 -0.02 1.76 16 4 C -0.14 -4.01 6.20 31.61 0.20 -3.82 16 5 C -0.04 -1.38 3.56 -10.53 -0.04 -1.42 16 6 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 7 C 0.07 3.00 5.37 88.55 0.48 3.47 16 8 N -0.44 -24.38 8.49 -180.34 -1.53 -25.91 16 9 C 0.19 11.22 6.46 39.46 0.25 11.48 16 10 C -0.48 -27.55 9.23 23.35 0.22 -27.33 16 11 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 12 C 0.03 1.52 5.49 85.17 0.47 1.99 16 13 N -0.79 -43.55 11.72 21.79 0.26 -43.29 16 14 Si 0.99 39.96 29.56 68.60 2.03 41.99 16 15 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 16 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 C -0.50 -26.38 10.98 67.69 0.74 -25.64 16 19 S 0.05 2.21 17.88 -56.49 -1.01 1.20 16 20 C 0.09 2.73 4.13 31.10 0.13 2.86 16 21 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 22 C -0.18 -5.43 7.59 71.98 0.55 -4.89 16 23 O -0.37 -10.62 11.10 -148.98 -1.65 -12.27 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.09 2.45 7.87 -2.39 -0.02 2.43 16 28 H 0.07 2.29 7.53 -2.39 -0.02 2.27 16 29 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 30 H 0.13 6.74 8.06 -2.91 -0.02 6.72 16 31 H 0.07 2.06 5.07 -8.99 -0.05 2.01 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 2.19 5.91 -7.41 -0.04 2.14 16 Total: -1.00 -65.27 278.77 2.92 -62.35 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.04 Total: 19.36 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 3.78 Total: -43.43 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.28 Total: -69.20 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.65 Total: -12.27 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.01 Total: 1.20 kcal Total: -65.27 2.92 -62.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686426175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.551 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds