Wall clock time and date at job start Mon Mar 30 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.27258 * 2 1 4 4 C 1.55202 * 110.36853 * 237.98635 * 2 1 3 5 5 C 1.55309 * 100.82201 * 204.80072 * 4 2 1 6 6 H 1.09005 * 110.84924 * 275.59549 * 5 4 2 7 7 C 1.50701 * 110.84878 * 152.17935 * 5 4 2 8 8 N 1.28795 * 124.99373 * 124.17017 * 7 5 4 9 9 C 1.33641 * 116.06158 * 179.97438 * 8 7 5 10 10 C 1.41162 * 122.86219 * 179.73000 * 9 8 7 11 11 H 1.08005 * 120.00010 * 174.00727 * 10 9 8 12 12 C 1.39719 * 120.00292 * 354.01066 * 10 9 8 13 13 N 1.31025 * 119.99795 * 6.15680 * 12 10 9 14 14 Si 1.86796 * 120.00297 * 186.15593 * 12 10 9 15 15 H 1.48494 * 109.47237 * 89.99762 * 14 12 10 16 16 H 1.48503 * 109.47130 * 210.00066 * 14 12 10 17 17 H 1.48501 * 109.46844 * 329.99520 * 14 12 10 18 18 C 1.37699 * 114.27541 * 0.02562 * 9 8 7 19 19 S 1.70991 * 108.83837 * 359.97438 * 18 9 8 20 20 C 1.54373 * 102.43894 * 33.88861 * 5 4 2 21 21 H 1.09001 * 109.83482 * 219.14270 * 20 5 4 22 22 C 1.52999 * 109.83293 * 98.25832 * 20 5 4 23 23 O 1.43242 * 107.59173 * 338.74288 * 20 5 4 24 24 H 1.09002 * 109.47277 * 299.36866 * 1 2 3 25 25 H 1.09001 * 109.46707 * 59.36951 * 1 2 3 26 26 H 1.08998 * 109.46928 * 179.36454 * 1 2 3 27 27 H 1.08998 * 111.30372 * 86.87342 * 4 2 1 28 28 H 1.08996 * 111.05881 * 322.62535 * 4 2 1 29 29 H 0.96992 * 120.00134 * 180.02562 * 13 12 10 30 30 H 1.08004 * 125.57969 * 179.97438 * 18 9 8 31 31 H 1.08995 * 109.47331 * 59.99878 * 22 20 5 32 32 H 1.09003 * 109.47182 * 180.02562 * 22 20 5 33 33 H 1.08997 * 109.47054 * 299.99740 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0702 -0.7713 -1.2337 5 6 3.4699 -1.2033 -0.7176 6 1 4.2002 -0.4074 -0.8644 7 6 3.9216 -2.4733 -1.3916 8 7 5.0247 -2.6123 -2.0418 9 6 5.2472 -3.8201 -2.5689 10 6 6.4060 -4.1292 -3.3134 11 1 6.5859 -5.1441 -3.6360 12 6 7.3205 -3.1223 -3.6328 13 7 7.1666 -1.9176 -3.1412 14 14 8.7624 -3.4936 -4.7607 15 1 8.3676 -3.2385 -6.1693 16 1 9.9090 -2.6205 -4.4021 17 1 9.1572 -4.9169 -4.6073 18 6 4.2468 -4.7354 -2.3293 19 16 3.0201 -3.9835 -1.4055 20 6 3.2112 -1.4412 0.7856 21 1 4.0581 -1.0791 1.3685 22 6 3.0023 -2.9342 1.0464 23 8 2.0285 -0.7156 1.1415 24 1 -0.3634 0.5040 0.8956 25 1 -0.3633 0.5236 -0.8843 26 1 -0.3633 -1.0276 -0.0114 27 1 2.1561 -0.1186 -2.1024 28 1 1.4488 -1.6386 -1.4563 29 1 7.8011 -1.2184 -3.3632 30 1 4.2384 -5.7605 -2.6692 31 1 3.8930 -3.4842 0.7429 32 1 2.8198 -3.0954 2.1089 33 1 2.1448 -3.2867 0.4733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686426176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:19 Heat of formation + Delta-G solvation = -14.099541 kcal Electronic energy + Delta-G solvation = -16794.978629 eV Core-core repulsion = 14140.120942 eV Total energy + Delta-G solvation = -2654.857686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66365 -37.65144 -33.61106 -32.60204 -32.25698 -28.98965 -28.33386 -25.60609 -24.34858 -22.80319 -21.07935 -20.24890 -18.32819 -17.69813 -16.37544 -15.46127 -15.20512 -15.10902 -14.28161 -13.85346 -13.71011 -13.31375 -12.82223 -12.45551 -12.21790 -12.09303 -11.77473 -11.54909 -11.50248 -11.36285 -11.13113 -10.74655 -10.71551 -10.55178 -10.44186 -10.25355 -9.54250 -9.26768 -9.22122 -8.05625 -7.86522 -7.22708 -6.54741 -4.34097 2.24807 2.88197 3.04342 3.09407 3.13011 3.67428 3.94951 4.00225 4.24587 4.78323 4.89794 5.05847 5.23570 5.31297 5.46239 5.52222 5.61960 5.71276 5.83542 5.92310 6.01511 6.09225 6.19471 6.23717 6.43354 6.44234 6.66481 6.83275 7.10727 7.24958 7.30616 7.51408 8.19056 8.54570 8.88531 9.58469 10.33357 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.006331 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.950896 B = 4421.908161 C = 4772.860796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.070 0.930 4 C -0.143 4.143 5 C -0.032 4.032 6 H 0.106 0.894 7 C 0.061 3.939 8 N -0.392 5.392 9 C 0.224 3.776 10 C -0.434 4.434 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.754 5.754 14 Si 0.911 3.089 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.466 4.466 19 S -0.019 6.019 20 C 0.087 3.913 21 H 0.082 0.918 22 C -0.165 4.165 23 O -0.376 6.376 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.273 0.727 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 4.257 4.434 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.087 0.913 4 C -0.182 4.182 5 C -0.055 4.055 6 H 0.124 0.876 7 C -0.223 4.223 8 N -0.106 5.106 9 C 0.102 3.898 10 C -0.469 4.469 11 H 0.101 0.899 12 C -0.150 4.150 13 N -0.377 5.377 14 Si 0.735 3.265 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.604 4.604 19 S 0.229 5.771 20 C 0.028 3.972 21 H 0.100 0.900 22 C -0.223 4.223 23 O -0.296 6.296 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.200 4.549 4.934 10.596 hybrid contribution 1.666 -0.527 -1.414 2.248 sum -6.534 4.022 3.521 8.442 Atomic orbital electron populations 1.21876 0.93978 1.02807 1.01982 1.22959 0.94598 0.95468 0.85183 0.91254 1.23495 0.95298 1.01111 0.98254 1.21137 0.97348 0.93956 0.93087 0.87600 1.27282 0.94822 0.96399 1.03779 1.67346 1.13732 1.22351 1.07150 1.17976 0.94070 0.84436 0.93362 1.18958 1.02562 0.95913 1.29444 0.89879 1.25977 0.98691 0.94722 0.95586 1.70104 1.32509 1.01650 1.33486 0.86278 0.80188 0.79520 0.80499 1.19505 1.20240 1.18661 1.25377 1.03664 1.05293 1.26110 1.82852 1.29574 1.09891 1.54737 1.22634 0.87590 0.92936 0.94013 0.90039 1.22538 1.03761 0.94654 1.01324 1.88410 1.42949 1.64549 1.33696 0.92123 0.91422 0.91876 0.89654 0.89777 0.91631 0.84735 0.90072 0.92448 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.63 37.16 0.36 -1.29 16 2 C 0.08 1.01 4.07 -25.56 -0.10 0.91 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.14 -2.17 6.04 -24.34 -0.15 -2.32 16 5 C -0.03 -0.59 3.45 -89.83 -0.31 -0.90 16 6 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 7 C 0.06 1.37 5.44 -13.55 -0.07 1.29 16 8 N -0.39 -10.53 8.49 -8.36 -0.07 -10.60 16 9 C 0.22 6.25 6.46 -86.17 -0.56 5.69 16 10 C -0.43 -12.08 9.23 -37.92 -0.35 -12.43 16 11 H 0.08 2.21 7.85 -52.48 -0.41 1.79 16 12 C 0.07 1.89 5.49 -17.34 -0.10 1.79 16 13 N -0.75 -20.36 11.72 55.54 0.65 -19.71 16 14 Si 0.91 19.23 29.56 -169.99 -5.03 14.21 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.47 -11.95 10.98 30.54 0.34 -11.61 16 19 S -0.02 -0.41 17.67 -107.50 -1.90 -2.31 16 20 C 0.09 1.44 4.10 -26.01 -0.11 1.33 16 21 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 22 C -0.16 -2.77 7.75 37.16 0.29 -2.49 16 23 O -0.38 -5.92 10.70 -35.23 -0.38 -6.30 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.33 7.37 -51.93 -0.38 0.94 16 29 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.13 3.33 8.06 -52.48 -0.42 2.91 16 31 H 0.08 1.54 6.21 -51.28 -0.32 1.22 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.20 5.89 -35.39 -0.21 0.99 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -29.58 280.92 -7.51 -37.09 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.26 Total: 3.41 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -0.76 Total: -20.01 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.58 Total: -30.31 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.38 Total: -6.30 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.90 Total: -2.31 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.58 -7.51 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686426176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.988 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds