Wall clock time and date at job start Mon Mar 30 2020 06:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47141 * 2 1 4 4 C 1.38290 * 119.93250 * 265.02172 * 3 2 1 5 5 C 1.38084 * 120.08920 * 179.97438 * 4 3 2 6 6 C 1.38948 * 119.94977 * 359.97438 * 5 4 3 7 7 N 1.39668 * 120.06725 * 180.02562 * 6 5 4 8 8 C 1.46497 * 119.99924 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47055 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47223 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99762 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00188 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99800 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00125 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47402 * 89.99994 * 14 12 10 16 16 H 1.48502 * 109.47206 * 209.99982 * 14 12 10 17 17 H 1.48497 * 109.47301 * 329.99853 * 14 12 10 18 18 C 1.38866 * 119.86225 * 359.74873 * 6 5 4 19 19 C 1.38240 * 119.91569 * 0.50957 * 18 6 5 20 20 Cl 1.73599 * 119.98009 * 179.77018 * 19 18 6 21 21 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46910 * 300.00241 * 1 2 3 23 23 H 1.09002 * 109.46817 * 59.99897 * 1 2 3 24 24 H 1.08997 * 109.47178 * 240.00029 * 2 1 3 25 25 H 1.08995 * 109.47220 * 119.99593 * 2 1 3 26 26 H 1.08004 * 119.95039 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.02876 * 180.02562 * 5 4 3 28 28 H 0.97007 * 119.99803 * 0.02562 * 7 6 5 29 29 H 1.08994 * 109.47522 * 299.99751 * 8 7 6 30 30 H 1.09001 * 109.46796 * 60.00561 * 8 7 6 31 31 H 1.09008 * 109.47262 * 299.99987 * 9 8 7 32 32 H 1.08999 * 109.47300 * 59.99934 * 9 8 7 33 33 H 0.97004 * 119.99368 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.04009 * 180.24895 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3604 2.0368 -1.1939 5 6 2.8205 3.3387 -1.1977 6 6 2.9535 4.0309 -0.0003 7 7 3.4181 5.3481 -0.0014 8 6 3.5583 6.0763 1.2620 9 6 4.0809 7.4868 0.9823 10 6 4.2257 8.2358 2.2820 11 1 3.9701 7.7541 3.2142 12 6 4.6834 9.5364 2.2809 13 7 4.9932 10.1235 1.1455 14 14 4.8622 10.4650 3.8918 15 1 6.2253 10.2481 4.4396 16 1 4.6496 11.9152 3.6534 17 1 3.8539 9.9700 4.8631 18 6 2.6180 3.4124 1.1969 19 6 2.1630 2.1070 1.1947 20 17 1.7488 1.3302 2.6909 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 2.2558 1.4989 -2.1247 27 1 3.0760 3.8189 -2.1307 28 1 3.6480 5.7806 -0.8387 29 1 2.5880 6.1399 1.7544 30 1 4.2603 5.5500 1.9088 31 1 5.0512 7.4238 0.4897 32 1 3.3786 8.0129 0.3356 33 1 5.3157 11.0384 1.1448 34 1 2.7164 3.9491 2.1289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691185494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:52 Heat of formation + Delta-G solvation = -8.448115 kcal Electronic energy + Delta-G solvation = -15634.766225 eV Core-core repulsion = 12978.109897 eV Total energy + Delta-G solvation = -2656.656328 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50149 -36.67174 -35.83000 -33.73944 -32.56692 -30.57717 -29.97277 -27.49987 -24.77864 -23.19311 -22.70771 -20.86411 -20.47370 -17.37705 -16.32618 -15.87781 -15.37248 -14.61810 -14.34824 -14.18862 -14.11571 -13.58020 -13.52851 -13.20818 -12.71278 -12.27209 -12.04801 -11.73389 -11.48735 -11.24214 -11.13373 -11.03450 -10.77451 -10.65669 -10.54742 -10.44962 -9.64787 -9.40980 -9.34250 -8.63437 -8.47532 -7.04422 -6.13293 -4.16825 1.40887 1.68574 2.28775 3.26313 3.32734 3.35999 3.89922 3.91352 4.39295 4.84402 4.93511 5.15687 5.23811 5.35185 5.38563 5.52775 5.60173 5.78067 5.88552 5.90669 5.99612 6.16008 6.21785 6.21989 6.37615 6.47932 6.63813 6.67020 6.89866 7.39337 7.56845 7.68423 7.87594 8.07984 8.27905 8.88958 9.48335 10.98308 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035710 B = 0.004056 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.912219 B = 6901.230816 C = 7566.621469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.153 4.153 4 C -0.057 4.057 5 C -0.201 4.201 6 C 0.237 3.763 7 N -0.734 5.734 8 C 0.122 3.878 9 C 0.014 3.986 10 C -0.523 4.523 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.194 4.194 19 C 0.021 3.979 20 Cl -0.080 7.080 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.400 0.600 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 -17.802 -3.653 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.156 4.156 4 C -0.076 4.076 5 C -0.224 4.224 6 C 0.129 3.871 7 N -0.359 5.359 8 C -0.001 4.001 9 C -0.024 4.024 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.218 4.218 19 C -0.006 4.006 20 Cl -0.051 7.051 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.235 0.765 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.368 -17.555 -3.379 18.978 hybrid contribution 0.251 0.852 0.653 1.102 sum -6.117 -16.704 -2.727 17.996 Atomic orbital electron populations 1.21742 0.95197 1.01179 1.02207 1.20385 0.95915 0.92479 1.02479 1.19331 1.07519 0.97295 0.91426 1.20592 0.96562 0.93899 0.96572 1.20663 1.09276 0.95884 0.96587 1.17793 0.90936 0.85495 0.92899 1.45271 1.70003 1.10115 1.10542 1.21752 0.99660 0.94758 0.83904 1.19278 0.96641 0.88434 0.98025 1.21031 1.44649 0.97838 0.92699 0.92306 1.25003 0.95144 0.97588 0.96539 1.69961 1.44396 1.13395 1.25427 0.86512 0.78587 0.78953 0.83508 1.20525 1.21126 1.19714 1.20488 1.08874 0.94284 0.98164 1.20428 1.01080 0.93017 0.86075 1.98332 1.92092 1.81043 1.33642 0.92868 0.92478 0.92774 0.91486 0.91128 0.85806 0.85935 0.76533 0.93125 0.93119 0.95961 0.95946 0.92793 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.08 -0.77 5.57 -27.88 -0.16 -0.93 16 3 C -0.15 -1.94 5.14 -104.55 -0.54 -2.48 16 4 C -0.06 -0.69 9.67 -39.62 -0.38 -1.08 16 5 C -0.20 -2.71 9.90 -39.37 -0.39 -3.10 16 6 C 0.24 3.74 6.65 -83.79 -0.56 3.18 16 7 N -0.73 -12.56 5.73 -58.64 -0.34 -12.90 16 8 C 0.12 2.44 4.85 -4.04 -0.02 2.42 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 14 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 C -0.19 -3.08 9.09 -39.35 -0.36 -3.43 16 19 C 0.02 0.30 6.31 -39.53 -0.25 0.05 16 20 Cl -0.08 -1.05 27.13 -51.86 -1.41 -2.45 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 25 H 0.07 0.74 7.12 -51.93 -0.37 0.37 16 26 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 27 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.40 6.40 8.49 -40.82 -0.35 6.06 16 29 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 30 H 0.05 1.02 7.96 -51.93 -0.41 0.60 16 31 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.13 2.17 6.73 -52.49 -0.35 1.82 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -28.37 302.65 -9.10 -37.48 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.80 Total: 1.73 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.83 Total: -19.23 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.40 Total: -38.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.41 Total: -2.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.37 -9.10 -37.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691185494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.028 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds