Wall clock time and date at job start Mon Mar 30 2020 06:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47141 * 2 1 4 4 C 1.38290 * 119.93250 * 265.02172 * 3 2 1 5 5 C 1.38084 * 120.08920 * 179.97438 * 4 3 2 6 6 C 1.38948 * 119.94977 * 359.97438 * 5 4 3 7 7 N 1.39668 * 120.06725 * 180.02562 * 6 5 4 8 8 C 1.46497 * 119.99924 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47055 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47223 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99762 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00188 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99800 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00125 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47402 * 89.99994 * 14 12 10 16 16 H 1.48502 * 109.47206 * 209.99982 * 14 12 10 17 17 H 1.48497 * 109.47301 * 329.99853 * 14 12 10 18 18 C 1.38866 * 119.86225 * 359.74873 * 6 5 4 19 19 C 1.38240 * 119.91569 * 0.50957 * 18 6 5 20 20 Cl 1.73599 * 119.98009 * 179.77018 * 19 18 6 21 21 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46910 * 300.00241 * 1 2 3 23 23 H 1.09002 * 109.46817 * 59.99897 * 1 2 3 24 24 H 1.08997 * 109.47178 * 240.00029 * 2 1 3 25 25 H 1.08995 * 109.47220 * 119.99593 * 2 1 3 26 26 H 1.08004 * 119.95039 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.02876 * 180.02562 * 5 4 3 28 28 H 0.97007 * 119.99803 * 0.02562 * 7 6 5 29 29 H 1.08994 * 109.47522 * 299.99751 * 8 7 6 30 30 H 1.09001 * 109.46796 * 60.00561 * 8 7 6 31 31 H 1.09008 * 109.47262 * 299.99987 * 9 8 7 32 32 H 1.08999 * 109.47300 * 59.99934 * 9 8 7 33 33 H 0.97004 * 119.99368 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.04009 * 180.24895 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3604 2.0368 -1.1939 5 6 2.8205 3.3387 -1.1977 6 6 2.9535 4.0309 -0.0003 7 7 3.4181 5.3481 -0.0014 8 6 3.5583 6.0763 1.2620 9 6 4.0809 7.4868 0.9823 10 6 4.2257 8.2358 2.2820 11 1 3.9701 7.7541 3.2142 12 6 4.6834 9.5364 2.2809 13 7 4.9932 10.1235 1.1455 14 14 4.8622 10.4650 3.8918 15 1 6.2253 10.2481 4.4396 16 1 4.6496 11.9152 3.6534 17 1 3.8539 9.9700 4.8631 18 6 2.6180 3.4124 1.1969 19 6 2.1630 2.1070 1.1947 20 17 1.7488 1.3302 2.6909 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 2.2558 1.4989 -2.1247 27 1 3.0760 3.8189 -2.1307 28 1 3.6480 5.7806 -0.8387 29 1 2.5880 6.1399 1.7544 30 1 4.2603 5.5500 1.9088 31 1 5.0512 7.4238 0.4897 32 1 3.3786 8.0129 0.3356 33 1 5.3157 11.0384 1.1448 34 1 2.7164 3.9491 2.1289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691185494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:52 Heat of formation + Delta-G solvation = -23.134077 kcal Electronic energy + Delta-G solvation = -15635.403056 eV Core-core repulsion = 12978.109897 eV Total energy + Delta-G solvation = -2657.293159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61018 -37.87585 -37.02864 -35.37474 -34.01111 -31.73270 -31.51143 -28.78992 -26.49248 -24.23152 -24.05222 -22.34641 -21.62887 -18.88040 -18.09490 -17.09387 -16.49475 -16.39952 -15.87960 -15.38053 -15.37046 -14.72438 -14.58144 -14.32635 -14.14270 -13.67553 -13.26563 -13.17655 -12.88573 -12.74447 -12.49593 -12.33170 -12.14086 -12.10138 -11.66329 -11.59888 -11.52266 -11.36850 -10.73596 -10.54611 -9.72115 -8.28109 -8.26050 -6.37090 0.31720 0.59303 1.21310 1.40575 1.41137 1.52483 2.35215 2.63345 2.80677 3.08944 3.90251 3.98864 4.22331 4.32230 4.40028 4.49468 4.56938 4.62436 4.65674 4.81356 4.86428 4.91745 5.12339 5.16195 5.27336 5.35858 5.42415 5.46384 5.56384 5.65504 5.71073 5.86615 6.10220 6.38109 6.76446 6.87435 7.32815 8.86165 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035710 B = 0.004056 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.912219 B = 6901.230816 C = 7566.621469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.053 4.053 5 C -0.196 4.196 6 C 0.214 3.786 7 N -0.740 5.740 8 C 0.146 3.854 9 C 0.022 3.978 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C -0.212 4.212 19 C 0.007 3.993 20 Cl -0.074 7.074 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.404 0.596 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.265 0.735 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 -19.470 -3.918 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.149 4.149 4 C -0.072 4.072 5 C -0.219 4.219 6 C 0.108 3.892 7 N -0.368 5.368 8 C 0.022 3.978 9 C -0.016 4.016 10 C -0.584 4.584 11 H 0.081 0.919 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.236 4.236 19 C -0.020 4.020 20 Cl -0.045 7.045 21 H 0.090 0.910 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.178 0.822 27 H 0.159 0.841 28 H 0.239 0.761 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.937 -19.268 -3.649 20.801 hybrid contribution 0.382 1.240 0.682 1.466 sum -6.555 -18.028 -2.967 19.411 Atomic orbital electron populations 1.21725 0.94507 1.02251 1.01657 1.20472 0.96408 0.90834 1.03549 1.19759 1.05785 0.98402 0.90959 1.21010 0.95033 0.93340 0.97776 1.20950 1.08226 0.96366 0.96359 1.17980 0.92267 0.84951 0.93960 1.44964 1.71595 1.10873 1.09354 1.21220 0.98905 0.92451 0.85237 1.19098 0.95124 0.90780 0.96555 1.21488 1.44505 0.98540 0.93829 0.91901 1.25923 0.94707 0.98628 1.00156 1.70080 1.45271 1.13854 1.27692 0.85424 0.78903 0.77453 0.79158 1.19739 1.20677 1.18759 1.20502 1.10146 0.95210 0.97779 1.20580 1.01492 0.92765 0.87138 1.98329 1.92018 1.80736 1.33416 0.91046 0.93927 0.92438 0.89201 0.91328 0.82248 0.84077 0.76120 0.93562 0.93527 0.98007 0.98000 0.92593 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.89 71.98 0.71 -1.63 16 2 C -0.08 -1.32 5.57 29.85 0.17 -1.15 16 3 C -0.15 -3.37 5.14 -19.81 -0.10 -3.47 16 4 C -0.05 -1.12 9.67 22.25 0.22 -0.90 16 5 C -0.20 -4.91 9.90 22.40 0.22 -4.69 16 6 C 0.21 6.69 6.65 38.21 0.25 6.94 16 7 N -0.74 -25.77 5.73 -339.44 -1.95 -27.71 16 8 C 0.15 6.03 4.85 86.38 0.42 6.45 16 9 C 0.02 1.11 5.09 29.85 0.15 1.27 16 10 C -0.55 -30.31 9.11 25.60 0.23 -30.07 16 11 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 12 C 0.00 0.25 5.46 84.65 0.46 0.71 16 13 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 14 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 18 C -0.21 -6.76 9.09 22.42 0.20 -6.55 16 19 C 0.01 0.21 6.31 22.31 0.14 0.35 16 20 Cl -0.07 -1.88 27.13 -2.72 -0.07 -1.95 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.04 0.81 7.89 -2.38 -0.02 0.79 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 25 H 0.07 1.25 7.12 -2.39 -0.02 1.24 16 26 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 27 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 28 H 0.40 13.17 8.49 -92.70 -0.79 12.39 16 29 H 0.05 1.92 7.94 -2.39 -0.02 1.90 16 30 H 0.05 1.93 7.96 -2.39 -0.02 1.92 16 31 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.12 3.99 6.73 -2.91 -0.02 3.97 16 Total: -1.00 -61.15 302.65 3.67 -57.48 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.30 Total: 14.30 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 3.08 Total: -32.76 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.66 Total: -82.58 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -61.15 3.67 -57.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691185494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.343 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds