Wall clock time and date at job start Mon Mar 30 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46902 * 109.47591 * 2 1 4 4 C 1.46900 * 110.99964 * 288.11254 * 3 2 1 5 5 C 1.50700 * 109.47182 * 160.35362 * 4 3 2 6 6 H 1.08001 * 119.99952 * 4.65173 * 5 4 3 7 7 C 1.37879 * 119.99951 * 184.65278 * 5 4 3 8 8 N 1.31517 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47441 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47531 * 119.99578 * 9 7 5 12 12 H 1.48499 * 109.47023 * 239.99863 * 9 7 5 13 13 C 1.46898 * 110.99996 * 164.15763 * 3 2 1 14 14 C 1.50702 * 109.47223 * 293.95208 * 13 3 2 15 15 C 1.34019 * 122.42740 * 269.98043 * 14 13 3 16 16 S 1.70612 * 110.99683 * 180.02562 * 15 14 13 17 17 C 1.75835 * 91.57282 * 359.97438 * 16 15 14 18 18 C 1.41233 * 125.47925 * 180.02562 * 17 16 15 19 19 O 1.21441 * 120.00113 * 359.97438 * 18 17 16 20 20 C 1.37183 * 109.03785 * 0.02562 * 17 16 15 21 21 H 1.08997 * 109.47720 * 179.55869 * 1 2 3 22 22 H 1.09005 * 109.46809 * 299.55367 * 1 2 3 23 23 H 1.08995 * 109.47563 * 59.55080 * 1 2 3 24 24 H 1.09008 * 109.46981 * 240.00268 * 2 1 3 25 25 H 1.09002 * 109.47312 * 120.00700 * 2 1 3 26 26 H 1.08996 * 109.47260 * 280.35788 * 4 3 2 27 27 H 1.09004 * 109.46954 * 40.35676 * 4 3 2 28 28 H 0.96995 * 119.99563 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.47072 * 173.95600 * 13 3 2 30 30 H 1.08998 * 109.47119 * 53.95399 * 13 3 2 31 31 H 1.07997 * 124.50106 * 0.02562 * 15 14 13 32 32 H 1.08006 * 119.99557 * 180.02562 * 18 17 16 33 33 H 1.08000 * 123.38262 * 179.73305 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7933 2.0234 -1.3035 5 6 1.8448 3.5212 -1.1449 6 1 2.1016 3.9546 -0.1896 7 6 1.5641 4.3382 -2.2195 8 7 1.2519 3.8105 -3.3830 9 14 1.6288 6.1947 -2.0232 10 1 2.0024 6.5321 -0.6261 11 1 2.6391 6.7563 -2.9555 12 1 0.2957 6.7718 -2.3317 13 6 3.4390 1.4414 0.3744 14 6 3.5982 1.0049 1.8080 15 6 3.5420 1.8673 2.8323 16 16 3.7588 1.0631 4.3212 17 6 3.9288 -0.4894 3.5132 18 6 4.1506 -1.7277 4.1552 19 8 4.2394 -1.7770 5.3653 20 6 3.8112 -0.3043 2.1590 21 1 -0.3634 -1.0276 -0.0079 22 1 -0.3633 0.5069 0.8940 23 1 -0.3634 0.5208 -0.8859 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.5661 1.7053 -2.0031 27 1 0.8149 1.7320 -1.6857 28 1 1.0541 4.3853 -4.1388 29 1 3.8039 2.4625 0.2629 30 1 4.0123 0.7780 -0.2732 31 1 3.3810 2.9302 2.7289 32 1 4.2421 -2.6306 3.5697 33 1 3.8833 -1.1077 1.4410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695005392.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:07 Heat of formation + Delta-G solvation = -0.223290 kcal Electronic energy + Delta-G solvation = -16144.776198 eV Core-core repulsion = 13490.520231 eV Total energy + Delta-G solvation = -2654.255967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34924 -38.37523 -36.07985 -32.64436 -31.19651 -29.75321 -27.50530 -25.47918 -24.72611 -22.60745 -21.37830 -19.85719 -19.02790 -17.41036 -16.50363 -16.25656 -15.11902 -14.94717 -14.54332 -14.36855 -14.08920 -13.69796 -13.39440 -12.80977 -12.64638 -12.38691 -11.98824 -11.65716 -11.37967 -11.18001 -10.97523 -10.87943 -10.68604 -10.55643 -10.31930 -10.00049 -9.73030 -9.27602 -8.76776 -8.46728 -8.34233 -7.30067 -6.06124 -4.07335 0.31125 1.58842 2.03483 2.22564 2.99211 3.27820 3.35780 3.39550 4.39429 4.46568 4.96861 5.14319 5.17362 5.30250 5.36775 5.51687 5.65409 5.75640 5.82477 6.00085 6.07167 6.21000 6.30742 6.47518 6.53310 6.64206 6.79741 7.19006 7.28774 7.33012 7.77902 8.07698 8.15336 8.49599 9.00095 9.56968 11.04472 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.005282 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.143541 B = 5299.258452 C = 5908.428796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.117 3.883 14 C -0.110 4.110 15 C -0.197 4.197 16 S 0.225 5.775 17 C -0.342 4.342 18 C 0.411 3.589 19 O -0.479 6.479 20 C -0.038 4.038 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.021 0.979 25 H 0.060 0.940 26 H -0.011 1.011 27 H 0.038 0.962 28 H 0.261 0.739 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.172 0.828 32 H 0.107 0.893 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -8.380 10.249 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.255 5.255 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.013 4.013 14 C -0.122 4.122 15 C -0.336 4.336 16 S 0.495 5.505 17 C -0.460 4.460 18 C 0.272 3.728 19 O -0.356 6.356 20 C -0.074 4.074 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.007 0.993 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.189 0.811 32 H 0.123 0.877 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.576 -7.589 12.592 15.397 hybrid contribution 0.280 0.284 -2.504 2.535 sum 4.856 -7.305 10.088 13.368 Atomic orbital electron populations 1.21732 0.95543 0.99912 1.02870 1.22074 0.96083 0.90998 0.98977 1.62184 1.14503 1.14371 1.34465 1.19812 0.96604 0.94253 0.82787 1.21185 1.46114 0.90639 0.96329 0.91964 1.24981 0.95473 0.98915 0.95227 1.69961 1.47655 1.35143 1.01098 0.86476 0.77613 0.85435 0.78094 1.19729 1.21134 1.21035 1.20699 0.90767 1.01762 0.88110 1.18949 1.03097 0.92084 0.98028 1.25522 1.05240 1.05692 0.97100 1.83129 1.64297 0.96233 1.06826 1.24646 1.22056 1.00706 0.98599 1.21735 0.70908 0.90720 0.89402 1.90584 1.38027 1.89650 1.17381 1.20958 0.95180 0.97385 0.93838 0.93689 0.92519 0.92013 0.96043 0.92158 0.99294 0.94352 0.92978 0.89051 0.95047 0.81060 0.87710 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.98 37.15 0.37 -2.01 16 2 C 0.05 0.81 5.53 -3.83 -0.02 0.79 16 3 N -0.53 -10.73 4.37 -237.51 -1.04 -11.77 16 4 C 0.19 4.72 4.59 -4.98 -0.02 4.70 16 5 C -0.50 -13.62 8.61 -34.44 -0.30 -13.91 16 6 H 0.06 1.67 7.66 -52.49 -0.40 1.26 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.12 2.06 5.04 -4.98 -0.03 2.03 16 14 C -0.11 -1.61 4.79 -106.48 -0.51 -2.13 16 15 C -0.20 -2.74 10.68 29.25 0.31 -2.43 16 16 S 0.23 2.82 22.79 -107.50 -2.45 0.37 16 17 C -0.34 -4.19 6.26 -38.83 -0.24 -4.44 16 18 C 0.41 4.61 11.37 31.87 0.36 4.98 16 19 O -0.48 -7.03 17.65 5.42 0.10 -6.93 16 20 C -0.04 -0.47 8.22 -40.34 -0.33 -0.80 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.06 1.16 6.52 -51.93 -0.34 0.82 16 24 H 0.02 0.37 8.05 -51.92 -0.42 -0.05 16 25 H 0.06 0.91 5.30 -51.93 -0.28 0.63 16 26 H -0.01 -0.28 8.00 -51.93 -0.42 -0.70 16 27 H 0.04 1.02 6.24 -51.93 -0.32 0.70 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.09 1.75 7.30 -51.92 -0.38 1.37 16 30 H 0.03 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.11 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.15 1.49 7.84 -52.49 -0.41 1.08 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -30.41 295.21 -7.94 -38.35 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.21 Total: -3.46 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.50 Total: -11.80 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.30 Total: -37.11 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.10 Total: -6.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.45 Total: 0.37 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.41 -7.94 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695005392.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.129 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds