Wall clock time and date at job start Mon Mar 30 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46902 * 109.47591 * 2 1 4 4 C 1.46900 * 110.99964 * 288.11254 * 3 2 1 5 5 C 1.50700 * 109.47182 * 160.35362 * 4 3 2 6 6 H 1.08001 * 119.99952 * 4.65173 * 5 4 3 7 7 C 1.37879 * 119.99951 * 184.65278 * 5 4 3 8 8 N 1.31517 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47441 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47531 * 119.99578 * 9 7 5 12 12 H 1.48499 * 109.47023 * 239.99863 * 9 7 5 13 13 C 1.46898 * 110.99996 * 164.15763 * 3 2 1 14 14 C 1.50702 * 109.47223 * 293.95208 * 13 3 2 15 15 C 1.34019 * 122.42740 * 269.98043 * 14 13 3 16 16 S 1.70612 * 110.99683 * 180.02562 * 15 14 13 17 17 C 1.75835 * 91.57282 * 359.97438 * 16 15 14 18 18 C 1.41233 * 125.47925 * 180.02562 * 17 16 15 19 19 O 1.21441 * 120.00113 * 359.97438 * 18 17 16 20 20 C 1.37183 * 109.03785 * 0.02562 * 17 16 15 21 21 H 1.08997 * 109.47720 * 179.55869 * 1 2 3 22 22 H 1.09005 * 109.46809 * 299.55367 * 1 2 3 23 23 H 1.08995 * 109.47563 * 59.55080 * 1 2 3 24 24 H 1.09008 * 109.46981 * 240.00268 * 2 1 3 25 25 H 1.09002 * 109.47312 * 120.00700 * 2 1 3 26 26 H 1.08996 * 109.47260 * 280.35788 * 4 3 2 27 27 H 1.09004 * 109.46954 * 40.35676 * 4 3 2 28 28 H 0.96995 * 119.99563 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.47072 * 173.95600 * 13 3 2 30 30 H 1.08998 * 109.47119 * 53.95399 * 13 3 2 31 31 H 1.07997 * 124.50106 * 0.02562 * 15 14 13 32 32 H 1.08006 * 119.99557 * 180.02562 * 18 17 16 33 33 H 1.08000 * 123.38262 * 179.73305 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7933 2.0234 -1.3035 5 6 1.8448 3.5212 -1.1449 6 1 2.1016 3.9546 -0.1896 7 6 1.5641 4.3382 -2.2195 8 7 1.2519 3.8105 -3.3830 9 14 1.6288 6.1947 -2.0232 10 1 2.0024 6.5321 -0.6261 11 1 2.6391 6.7563 -2.9555 12 1 0.2957 6.7718 -2.3317 13 6 3.4390 1.4414 0.3744 14 6 3.5982 1.0049 1.8080 15 6 3.5420 1.8673 2.8323 16 16 3.7588 1.0631 4.3212 17 6 3.9288 -0.4894 3.5132 18 6 4.1506 -1.7277 4.1552 19 8 4.2394 -1.7770 5.3653 20 6 3.8112 -0.3043 2.1590 21 1 -0.3634 -1.0276 -0.0079 22 1 -0.3633 0.5069 0.8940 23 1 -0.3634 0.5208 -0.8859 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.5661 1.7053 -2.0031 27 1 0.8149 1.7320 -1.6857 28 1 1.0541 4.3853 -4.1388 29 1 3.8039 2.4625 0.2629 30 1 4.0123 0.7780 -0.2732 31 1 3.3810 2.9302 2.7289 32 1 4.2421 -2.6306 3.5697 33 1 3.8833 -1.1077 1.4410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695005392.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:06 Heat of formation + Delta-G solvation = -19.429760 kcal Electronic energy + Delta-G solvation = -16145.609053 eV Core-core repulsion = 13490.520231 eV Total energy + Delta-G solvation = -2655.088822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39626 -39.54198 -37.50569 -34.69529 -32.38803 -31.16158 -29.22865 -26.86801 -25.95460 -24.37218 -22.50655 -21.25335 -20.16861 -18.57343 -18.40334 -17.24478 -16.80064 -16.34786 -15.91849 -15.50070 -15.39831 -15.23123 -14.68240 -14.25552 -13.97045 -13.76355 -13.36692 -13.24934 -12.86340 -12.79557 -12.60587 -12.48316 -12.17921 -12.09254 -11.78944 -11.48932 -11.23710 -10.90610 -10.57914 -9.79590 -9.43136 -8.93595 -8.17622 -6.26640 -0.66239 0.60199 1.01081 1.19400 1.40582 1.42056 1.54243 2.03325 2.41490 3.14405 3.45985 3.65469 4.02579 4.18173 4.26497 4.28141 4.48884 4.58824 4.63989 4.73569 4.78914 4.84830 4.98969 5.07893 5.25608 5.30970 5.34092 5.39572 5.51168 5.69581 6.12035 6.42550 6.47915 6.68160 6.89273 7.42701 8.92840 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.005282 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.143541 B = 5299.258452 C = 5908.428796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 N -0.540 5.540 4 C 0.206 3.794 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.121 3.879 14 C -0.123 4.123 15 C -0.208 4.208 16 S 0.240 5.760 17 C -0.343 4.343 18 C 0.418 3.582 19 O -0.516 6.516 20 C -0.032 4.032 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.030 0.970 24 H 0.022 0.978 25 H 0.090 0.910 26 H -0.037 1.037 27 H 0.014 0.986 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -9.368 11.467 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 N -0.264 5.264 4 C 0.080 3.920 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.207 1.207 13 C -0.009 4.009 14 C -0.135 4.135 15 C -0.347 4.347 16 S 0.510 5.490 17 C -0.461 4.461 18 C 0.281 3.719 19 O -0.395 6.395 20 C -0.067 4.067 21 H 0.097 0.903 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.109 0.891 26 H -0.019 1.019 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.185 0.815 32 H 0.174 0.826 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.026 -8.589 13.825 17.034 hybrid contribution 0.161 0.542 -2.842 2.898 sum 5.187 -8.047 10.983 14.570 Atomic orbital electron populations 1.21708 0.95285 1.01567 1.01099 1.22195 0.96326 0.89327 1.00357 1.62093 1.16530 1.16412 1.31398 1.19432 0.94281 0.93756 0.84544 1.21499 1.45688 0.92039 0.96227 0.92181 1.25833 0.95078 1.03705 0.94872 1.70079 1.48671 1.36890 1.01912 0.85423 0.77661 0.79657 0.78409 1.18840 1.20529 1.20694 1.20568 0.89146 1.00732 0.90418 1.18782 1.05017 0.93537 0.96154 1.25589 1.05247 1.05793 0.98054 1.83144 1.63569 0.96622 1.05652 1.24955 1.21565 1.01013 0.98580 1.22424 0.68954 0.91524 0.88956 1.90590 1.39748 1.90019 1.19163 1.21067 0.94357 0.96853 0.94382 0.90313 0.92943 0.95044 0.95989 0.89143 1.01942 0.96842 0.92816 0.91502 0.94349 0.81541 0.82596 0.80608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.98 71.98 0.72 -3.78 16 2 C 0.05 1.51 5.53 86.30 0.48 1.99 16 3 N -0.54 -21.91 4.37 -905.36 -3.96 -25.87 16 4 C 0.21 10.56 4.59 85.56 0.39 10.95 16 5 C -0.52 -28.52 8.61 25.60 0.22 -28.30 16 6 H 0.06 3.27 7.66 -2.91 -0.02 3.25 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 9 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.12 4.25 5.04 85.56 0.43 4.68 16 14 C -0.12 -3.42 4.79 -21.07 -0.10 -3.52 16 15 C -0.21 -5.61 10.68 66.86 0.71 -4.89 16 16 S 0.24 5.60 22.79 -56.49 -1.29 4.31 16 17 C -0.34 -7.34 6.26 22.76 0.14 -7.20 16 18 C 0.42 7.82 11.37 68.56 0.78 8.60 16 19 O -0.52 -13.81 17.65 -3.53 -0.06 -13.87 16 20 C -0.03 -0.69 8.22 21.78 0.18 -0.51 16 21 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.03 1.19 6.52 -2.39 -0.02 1.17 16 24 H 0.02 0.73 8.05 -2.38 -0.02 0.71 16 25 H 0.09 2.44 5.30 -2.39 -0.01 2.43 16 26 H -0.04 -2.05 8.00 -2.39 -0.02 -2.07 16 27 H 0.01 0.75 6.24 -2.38 -0.01 0.74 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.07 2.63 7.30 -2.38 -0.02 2.62 16 30 H 0.04 1.28 8.11 -2.39 -0.02 1.26 16 31 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.18 2.74 7.84 -2.91 -0.02 2.72 16 Total: -1.00 -66.69 295.21 2.52 -64.17 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.10 Total: 1.96 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 4.42 Total: -21.36 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.67 Total: -80.98 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.06 Total: -13.87 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.29 Total: 4.31 kcal Total: -66.69 2.52 -64.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695005392.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.745 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds