Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33645 * 122.74737 * 2 1 4 4 S 1.76194 * 107.92153 * 179.80378 * 3 2 1 5 5 C 1.70971 * 90.28435 * 0.28577 * 4 3 2 6 6 C 1.50704 * 124.91812 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.87201 * 243.69157 * 6 5 4 8 8 C 1.54107 * 109.87688 * 4.69971 * 6 5 4 9 9 C 1.54811 * 104.18785 * 121.45291 * 8 6 5 10 10 C 1.54998 * 102.09135 * 20.87939 * 9 8 6 11 11 H 1.09002 * 110.61731 * 81.47787 * 10 9 8 12 12 C 1.50705 * 110.61646 * 204.31722 * 10 9 8 13 13 H 1.08000 * 119.99893 * 357.82588 * 12 10 9 14 14 C 1.37874 * 119.99674 * 177.82336 * 12 10 9 15 15 N 1.31515 * 119.99655 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 120.00388 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46869 * 90.00178 * 16 14 12 18 18 H 1.48497 * 109.47222 * 210.00165 * 16 14 12 19 19 H 1.48501 * 109.46923 * 330.00206 * 16 14 12 20 20 O 1.43748 * 109.87775 * 122.52894 * 6 5 4 21 21 N 1.29023 * 110.16733 * 359.70926 * 5 4 3 22 22 H 1.09004 * 109.47057 * 269.97528 * 1 2 3 23 23 H 1.09001 * 109.47193 * 29.96879 * 1 2 3 24 24 H 1.08994 * 109.47308 * 149.97159 * 1 2 3 25 25 H 1.08000 * 126.03606 * 0.03172 * 3 2 1 26 26 H 1.09002 * 109.47375 * 181.00697 * 7 6 5 27 27 H 1.09001 * 109.47066 * 301.00308 * 7 6 5 28 28 H 1.09004 * 109.47051 * 61.00375 * 7 6 5 29 29 H 1.08999 * 110.48654 * 2.77744 * 8 6 5 30 30 H 1.09003 * 110.59771 * 240.18332 * 8 6 5 31 31 H 1.09003 * 110.90357 * 262.68110 * 9 8 6 32 32 H 1.08992 * 110.93649 * 139.08947 * 9 8 6 33 33 H 0.96998 * 120.00143 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9332 0.6732 0.0057 5 6 3.5040 -0.9817 -0.0010 6 6 4.4836 -2.1270 -0.0008 7 6 4.3418 -2.9328 -1.2937 8 6 5.9213 -1.5867 0.1249 9 6 6.4680 -2.2579 1.4084 10 6 5.5280 -3.4809 1.5608 11 1 5.8519 -4.2969 0.9148 12 6 5.4741 -3.9330 2.9974 13 1 6.0753 -3.4343 3.7433 14 6 4.6574 -4.9831 3.3594 15 7 4.6100 -5.3773 4.6132 16 14 3.6171 -5.8451 2.0694 17 1 4.3877 -6.9713 1.4838 18 1 2.3788 -6.3679 2.7006 19 1 3.2578 -4.8812 0.9984 20 8 4.2446 -2.9744 1.1354 21 7 2.2200 -1.1082 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8897 -0.5142 25 1 1.8391 2.1308 0.0005 26 1 5.0403 -3.7694 -1.2789 27 1 3.3230 -3.3116 -1.3759 28 1 4.5609 -2.2914 -2.1474 29 1 5.9131 -0.5024 0.2354 30 1 6.5170 -1.8767 -0.7406 31 1 6.3789 -1.5897 2.2649 32 1 7.5013 -2.5763 1.2715 33 1 4.0351 -6.1159 4.8680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702010345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = -2.110280 kcal Electronic energy + Delta-G solvation = -16971.936091 eV Core-core repulsion = 14317.598298 eV Total energy + Delta-G solvation = -2654.337793 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86696 -38.59572 -33.26753 -32.09978 -31.33837 -30.25165 -27.46522 -27.17727 -25.06155 -22.96091 -20.43579 -20.13906 -19.10282 -17.48899 -16.87640 -15.77522 -15.32127 -14.87396 -14.29165 -14.01716 -13.49832 -13.30693 -13.20585 -12.64929 -12.58338 -12.36669 -12.18470 -11.90585 -11.71064 -11.22632 -10.95417 -10.74007 -10.64991 -10.33778 -9.93449 -9.76253 -9.51046 -9.27426 -9.15210 -8.57058 -8.50972 -8.39727 -6.12040 -4.20997 0.92830 1.56585 1.96026 3.04036 3.39791 3.48278 3.74051 4.23692 4.54463 4.66240 5.08606 5.16796 5.24342 5.26097 5.34687 5.40244 5.63849 5.64396 5.75864 5.83403 5.86672 5.98550 6.08560 6.25264 6.29912 6.37705 6.41880 6.57443 6.63501 7.07656 7.56857 8.01991 8.16577 8.41832 8.88580 9.51210 10.98046 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.008170 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.960565 B = 3426.315795 C = 3887.619016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 C -0.284 4.284 4 S 0.112 5.888 5 C 0.086 3.914 6 C 0.167 3.833 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.133 4.133 10 C 0.168 3.832 11 H 0.031 0.969 12 C -0.519 4.519 13 H 0.080 0.920 14 C 0.085 3.915 15 N -0.889 5.889 16 Si 0.865 3.135 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.221 1.221 20 O -0.345 6.345 21 N -0.457 5.457 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.172 0.828 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 11.681 -12.546 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.422 4.422 4 S 0.368 5.632 5 C -0.193 4.193 6 C 0.123 3.877 7 C -0.209 4.209 8 C -0.188 4.188 9 C -0.171 4.171 10 C 0.113 3.887 11 H 0.049 0.951 12 C -0.555 4.555 13 H 0.098 0.902 14 C -0.120 4.120 15 N -0.526 5.526 16 Si 0.691 3.309 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.143 1.143 20 O -0.265 6.265 21 N -0.172 5.172 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.189 0.811 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.772 11.566 -12.315 16.987 hybrid contribution -1.376 -0.356 -0.426 1.484 sum -3.148 11.210 -12.740 17.259 Atomic orbital electron populations 1.20338 0.87532 1.02891 1.02913 1.20369 0.98222 0.86642 1.01168 1.26836 0.96082 1.03539 1.15770 1.83742 1.07071 1.03690 1.68693 1.27309 0.93942 0.97096 1.00983 1.20414 0.89272 0.86890 0.91145 1.22174 1.03499 1.00016 0.95225 1.23161 0.95197 0.99781 1.00650 1.23027 0.99834 0.98769 0.95461 1.21229 0.79916 0.91186 0.96380 0.95122 1.20892 1.27361 1.15807 0.91471 0.90160 1.25049 0.95280 0.96170 0.95454 1.69913 1.38368 1.27394 1.16926 0.87039 0.79852 0.79986 0.84043 1.21005 1.21667 1.14342 1.89486 1.32375 1.61504 1.43103 1.66031 1.04739 1.30940 1.15477 0.90679 0.91077 0.90686 0.81106 0.91336 0.91356 0.92516 0.91691 0.90153 0.90841 0.91111 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.31 36.01 0.37 -0.56 16 2 C 0.07 1.09 6.74 -84.22 -0.57 0.52 16 3 C -0.28 -3.91 11.13 29.12 0.32 -3.59 16 4 S 0.11 1.64 20.77 -107.50 -2.23 -0.59 16 5 C 0.09 1.60 6.19 -13.46 -0.08 1.52 16 6 C 0.17 3.21 1.15 -91.19 -0.11 3.11 16 7 C -0.15 -2.53 8.60 37.16 0.32 -2.21 16 8 C -0.15 -2.45 6.18 -25.20 -0.16 -2.61 16 9 C -0.13 -2.58 6.55 -24.72 -0.16 -2.74 16 10 C 0.17 4.01 2.47 -26.83 -0.07 3.94 16 11 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 12 C -0.52 -14.83 9.41 -34.44 -0.32 -15.15 16 13 H 0.08 2.44 8.02 -52.49 -0.42 2.02 16 14 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 15 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 16 Si 0.86 22.36 27.08 -169.99 -4.60 17.76 16 17 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 19 H -0.22 -5.65 5.50 56.52 0.31 -5.34 16 20 O -0.34 -8.40 7.83 -35.23 -0.28 -8.67 16 21 N -0.46 -8.90 10.53 -8.06 -0.08 -8.98 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.97 5.62 -46.93 -0.26 0.71 16 30 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 31 H 0.07 1.48 8.05 -51.93 -0.42 1.07 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -33.00 284.38 -7.19 -40.19 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.50 Total: -1.81 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.55 Total: -15.34 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.69 Total: -35.82 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.28 Total: -8.67 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.60 Total: 17.76 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.23 Total: -0.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.00 -7.19 -40.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702010345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.080 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds