Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33645 * 122.74737 * 2 1 4 4 S 1.76194 * 107.92153 * 179.80378 * 3 2 1 5 5 C 1.70971 * 90.28435 * 0.28577 * 4 3 2 6 6 C 1.50704 * 124.91812 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.87201 * 243.69157 * 6 5 4 8 8 C 1.54107 * 109.87688 * 4.69971 * 6 5 4 9 9 C 1.54811 * 104.18785 * 121.45291 * 8 6 5 10 10 C 1.54998 * 102.09135 * 20.87939 * 9 8 6 11 11 H 1.09002 * 110.61731 * 81.47787 * 10 9 8 12 12 C 1.50705 * 110.61646 * 204.31722 * 10 9 8 13 13 H 1.08000 * 119.99893 * 357.82588 * 12 10 9 14 14 C 1.37874 * 119.99674 * 177.82336 * 12 10 9 15 15 N 1.31515 * 119.99655 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 120.00388 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46869 * 90.00178 * 16 14 12 18 18 H 1.48497 * 109.47222 * 210.00165 * 16 14 12 19 19 H 1.48501 * 109.46923 * 330.00206 * 16 14 12 20 20 O 1.43748 * 109.87775 * 122.52894 * 6 5 4 21 21 N 1.29023 * 110.16733 * 359.70926 * 5 4 3 22 22 H 1.09004 * 109.47057 * 269.97528 * 1 2 3 23 23 H 1.09001 * 109.47193 * 29.96879 * 1 2 3 24 24 H 1.08994 * 109.47308 * 149.97159 * 1 2 3 25 25 H 1.08000 * 126.03606 * 0.03172 * 3 2 1 26 26 H 1.09002 * 109.47375 * 181.00697 * 7 6 5 27 27 H 1.09001 * 109.47066 * 301.00308 * 7 6 5 28 28 H 1.09004 * 109.47051 * 61.00375 * 7 6 5 29 29 H 1.08999 * 110.48654 * 2.77744 * 8 6 5 30 30 H 1.09003 * 110.59771 * 240.18332 * 8 6 5 31 31 H 1.09003 * 110.90357 * 262.68110 * 9 8 6 32 32 H 1.08992 * 110.93649 * 139.08947 * 9 8 6 33 33 H 0.96998 * 120.00143 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9332 0.6732 0.0057 5 6 3.5040 -0.9817 -0.0010 6 6 4.4836 -2.1270 -0.0008 7 6 4.3418 -2.9328 -1.2937 8 6 5.9213 -1.5867 0.1249 9 6 6.4680 -2.2579 1.4084 10 6 5.5280 -3.4809 1.5608 11 1 5.8519 -4.2969 0.9148 12 6 5.4741 -3.9330 2.9974 13 1 6.0753 -3.4343 3.7433 14 6 4.6574 -4.9831 3.3594 15 7 4.6100 -5.3773 4.6132 16 14 3.6171 -5.8451 2.0694 17 1 4.3877 -6.9713 1.4838 18 1 2.3788 -6.3679 2.7006 19 1 3.2578 -4.8812 0.9984 20 8 4.2446 -2.9744 1.1354 21 7 2.2200 -1.1082 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8897 -0.5142 25 1 1.8391 2.1308 0.0005 26 1 5.0403 -3.7694 -1.2789 27 1 3.3230 -3.3116 -1.3759 28 1 4.5609 -2.2914 -2.1474 29 1 5.9131 -0.5024 0.2354 30 1 6.5170 -1.8767 -0.7406 31 1 6.3789 -1.5897 2.2649 32 1 7.5013 -2.5763 1.2715 33 1 4.0351 -6.1159 4.8680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702010345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = -24.760761 kcal Electronic energy + Delta-G solvation = -16972.918289 eV Core-core repulsion = 14317.598298 eV Total energy + Delta-G solvation = -2655.319991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19295 -40.05965 -35.12119 -33.83087 -32.83877 -31.64838 -28.92562 -28.50529 -26.52604 -24.51326 -22.15520 -21.52495 -20.34541 -19.08431 -18.62658 -17.21626 -17.02258 -16.27297 -15.99690 -15.32721 -14.86999 -14.84536 -14.62936 -14.39783 -13.97327 -13.54512 -13.44293 -13.26917 -13.00906 -12.81314 -12.64927 -12.24796 -12.13339 -11.98615 -11.80801 -11.47901 -11.35849 -10.78167 -10.63979 -10.35813 -10.12790 -9.64743 -8.38852 -6.50675 -0.26693 0.40303 0.78890 1.32038 1.37615 1.67073 1.83547 2.39387 2.87927 3.05614 3.41282 3.75645 3.92338 3.97860 4.22086 4.28894 4.36359 4.38866 4.52584 4.65971 4.74563 4.81054 4.83556 4.88137 4.95318 4.98299 5.09463 5.24702 5.37575 5.40831 5.50298 6.17586 6.36569 6.65637 6.90388 7.25500 8.75150 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.008170 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.960565 B = 3426.315795 C = 3887.619016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.036 3.964 3 C -0.266 4.266 4 S 0.162 5.838 5 C 0.040 3.960 6 C 0.153 3.847 7 C -0.146 4.146 8 C -0.136 4.136 9 C -0.130 4.130 10 C 0.165 3.835 11 H 0.039 0.961 12 C -0.526 4.526 13 H 0.045 0.955 14 C 0.029 3.971 15 N -0.938 5.938 16 Si 0.928 3.072 17 H -0.267 1.267 18 H -0.297 1.297 19 H -0.219 1.219 20 O -0.380 6.380 21 N -0.496 5.496 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.210 0.790 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 13.725 -15.187 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.405 4.405 4 S 0.418 5.582 5 C -0.237 4.237 6 C 0.109 3.891 7 C -0.205 4.205 8 C -0.174 4.174 9 C -0.167 4.167 10 C 0.109 3.891 11 H 0.056 0.944 12 C -0.563 4.563 13 H 0.063 0.937 14 C -0.170 4.170 15 N -0.577 5.577 16 Si 0.752 3.248 17 H -0.192 1.192 18 H -0.224 1.224 19 H -0.141 1.141 20 O -0.301 6.301 21 N -0.212 5.212 22 H 0.093 0.907 23 H 0.123 0.877 24 H 0.084 0.916 25 H 0.227 0.773 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.727 13.616 -14.973 20.312 hybrid contribution -1.389 -0.808 0.410 1.658 sum -3.116 12.808 -14.563 19.643 Atomic orbital electron populations 1.20427 0.85495 1.04159 1.03283 1.20887 0.99781 0.86482 1.02354 1.27360 0.95516 1.04778 1.12828 1.83406 1.07297 1.00299 1.67197 1.27237 0.93994 0.99033 1.03470 1.20762 0.91117 0.87109 0.90064 1.22147 1.02407 1.00535 0.95375 1.23143 0.93632 1.00441 1.00182 1.22941 1.00335 0.96844 0.96629 1.21084 0.81279 0.93327 0.93379 0.94360 1.21226 1.26124 1.15304 0.93628 0.93689 1.25887 0.96718 0.97263 0.97172 1.70041 1.40107 1.28664 1.18892 0.86059 0.77993 0.79180 0.81555 1.19203 1.22418 1.14094 1.89347 1.32125 1.62986 1.45614 1.66027 1.05734 1.33423 1.16032 0.90689 0.87683 0.91593 0.77277 0.90845 0.93428 0.89277 0.90065 0.86558 0.92612 0.88713 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.31 71.24 0.73 -0.92 16 2 C 0.04 1.08 6.74 41.53 0.28 1.36 16 3 C -0.27 -6.40 11.13 66.78 0.74 -5.65 16 4 S 0.16 4.25 20.77 -56.49 -1.17 3.07 16 5 C 0.04 1.44 6.19 88.52 0.55 1.99 16 6 C 0.15 5.61 1.15 -11.16 -0.01 5.60 16 7 C -0.15 -4.59 8.60 71.98 0.62 -3.97 16 8 C -0.14 -4.05 6.18 31.59 0.20 -3.85 16 9 C -0.13 -4.84 6.55 31.90 0.21 -4.63 16 10 C 0.16 7.83 2.47 30.53 0.08 7.90 16 11 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 12 C -0.53 -30.99 9.41 25.60 0.24 -30.75 16 13 H 0.04 2.87 8.02 -2.91 -0.02 2.85 16 14 C 0.03 1.79 5.47 84.65 0.46 2.25 16 15 N -0.94 -60.44 13.96 21.45 0.30 -60.14 16 16 Si 0.93 47.47 27.08 68.60 1.86 49.33 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 19 H -0.22 -11.02 5.50 99.48 0.55 -10.48 16 20 O -0.38 -18.42 7.83 -148.98 -1.17 -19.58 16 21 N -0.50 -18.82 10.53 -179.40 -1.89 -20.71 16 22 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.10 1.55 8.12 -2.39 -0.02 1.53 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 26 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.14 5.62 -5.57 -0.03 2.11 16 30 H 0.12 2.64 7.70 -2.39 -0.02 2.62 16 31 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 32 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -75.00 284.38 2.94 -72.06 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.92 Total: 6.65 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.10 Total: -30.67 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.59 Total: -80.85 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.17 Total: -19.58 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.86 Total: 49.33 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.17 Total: 3.07 kcal Total: -75.00 2.94 -72.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702010345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.297 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds