Wall clock time and date at job start Mon Mar 30 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.33643 * 122.75513 * 2 1 4 4 S 1.76195 * 107.92892 * 179.80374 * 3 2 1 5 5 C 1.70984 * 90.28238 * 0.28193 * 4 3 2 6 6 C 1.50697 * 124.91892 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.82638 * 120.58245 * 6 5 4 8 8 C 1.54383 * 109.82796 * 359.70056 * 6 5 4 9 9 C 1.55308 * 102.25463 * 219.12868 * 8 6 5 10 10 C 1.54951 * 100.93819 * 34.13293 * 9 8 6 11 11 H 1.09000 * 110.31192 * 82.57262 * 10 9 8 12 12 C 1.50706 * 110.30536 * 204.64244 * 10 9 8 13 13 H 1.07995 * 120.00167 * 359.72244 * 12 10 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 10 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 89.99430 * 16 14 12 18 18 H 1.48494 * 109.47031 * 209.99977 * 16 14 12 19 19 H 1.48504 * 109.46680 * 329.99678 * 16 14 12 20 20 O 1.43232 * 109.83248 * 241.56964 * 6 5 4 21 21 N 1.29024 * 110.16426 * 359.71518 * 5 4 3 22 22 H 1.09008 * 109.47361 * 269.97645 * 1 2 3 23 23 H 1.09005 * 109.47356 * 29.97481 * 1 2 3 24 24 H 1.09004 * 109.47763 * 149.97504 * 1 2 3 25 25 H 1.08004 * 126.03238 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47088 * 299.12256 * 7 6 5 27 27 H 1.09006 * 109.47055 * 59.11249 * 7 6 5 28 28 H 1.08993 * 109.47391 * 179.11270 * 7 6 5 29 29 H 1.08995 * 110.85138 * 100.93748 * 8 6 5 30 30 H 1.09002 * 111.02403 * 337.39644 * 8 6 5 31 31 H 1.08999 * 111.12164 * 276.21809 * 9 8 6 32 32 H 1.08996 * 111.16673 * 152.06788 * 9 8 6 33 33 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9332 0.6731 0.0057 5 6 3.5039 -0.9820 -0.0008 6 6 4.4833 -2.1272 -0.0007 7 6 4.2595 -3.0013 1.2349 8 6 5.9274 -1.5813 -0.0013 9 6 6.6519 -2.5663 -0.9588 10 6 5.5205 -2.8783 -1.9706 11 1 5.4622 -2.0951 -2.7264 12 6 5.7562 -4.2166 -2.6224 13 1 6.6253 -4.8005 -2.3578 14 6 4.8650 -4.6929 -3.5604 15 7 5.0710 -5.8605 -4.1296 16 14 3.3659 -3.6794 -4.0239 17 1 3.7040 -2.7873 -5.1619 18 1 2.2579 -4.5861 -4.4179 19 1 2.9441 -2.8589 -2.8602 20 8 4.3161 -2.9099 -1.1885 21 7 2.2198 -1.1084 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3635 -0.8898 -0.5142 25 1 1.8392 2.1308 0.0004 26 1 4.4201 -2.4069 2.1343 27 1 3.2387 -3.3834 1.2296 28 1 4.9600 -3.8362 1.2212 29 1 6.3589 -1.6245 0.9987 30 1 5.9609 -0.5645 -0.3927 31 1 6.9666 -3.4668 -0.4314 32 1 7.4977 -2.0864 -1.4510 33 1 4.4442 -6.1955 -4.7898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702010348.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:28 Heat of formation + Delta-G solvation = -3.378876 kcal Electronic energy + Delta-G solvation = -17003.936705 eV Core-core repulsion = 14349.543902 eV Total energy + Delta-G solvation = -2654.392803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87917 -38.57527 -33.30112 -32.10394 -31.39464 -30.27114 -27.49020 -26.97873 -25.11455 -22.95194 -20.58051 -20.15044 -18.96266 -17.52788 -16.85384 -15.88720 -15.48797 -14.74448 -14.54580 -13.95913 -13.47763 -13.07935 -12.93084 -12.63269 -12.56725 -12.40608 -12.17256 -11.95354 -11.74787 -11.20606 -11.04152 -10.78890 -10.64952 -10.26696 -10.02902 -9.75085 -9.52464 -9.32325 -9.16151 -8.56865 -8.53047 -8.33401 -6.12131 -4.20627 0.90926 1.55961 1.94755 3.01780 3.39952 3.47387 3.75742 4.23205 4.54936 4.63264 5.06186 5.15457 5.21338 5.26391 5.32396 5.40728 5.58877 5.66179 5.74646 5.88410 5.90579 5.99536 6.13161 6.26861 6.30522 6.37959 6.44105 6.53487 6.71865 7.13196 7.58431 8.02808 8.24372 8.41115 8.89196 9.52304 10.97953 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023307 B = 0.008782 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.059522 B = 3187.440688 C = 3825.411523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 C -0.283 4.283 4 S 0.102 5.898 5 C 0.076 3.924 6 C 0.172 3.828 7 C -0.136 4.136 8 C -0.153 4.153 9 C -0.130 4.130 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.520 4.520 13 H 0.081 0.919 14 C 0.088 3.912 15 N -0.889 5.889 16 Si 0.864 3.136 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.223 1.223 20 O -0.348 6.348 21 N -0.458 5.458 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.171 0.829 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 14.006 10.300 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.421 4.421 4 S 0.358 5.642 5 C -0.204 4.204 6 C 0.128 3.872 7 C -0.195 4.195 8 C -0.191 4.191 9 C -0.168 4.168 10 C 0.112 3.888 11 H 0.045 0.955 12 C -0.557 4.557 13 H 0.099 0.901 14 C -0.117 4.117 15 N -0.526 5.526 16 Si 0.690 3.310 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.146 1.146 20 O -0.267 6.267 21 N -0.172 5.172 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.189 0.811 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.041 13.809 10.121 17.389 hybrid contribution -1.617 0.634 -0.439 1.792 sum -4.658 14.443 9.682 18.001 Atomic orbital electron populations 1.20338 0.87532 1.03219 1.02607 1.20397 0.98238 0.86699 1.01153 1.26788 0.95898 1.03530 1.15905 1.83792 1.07280 1.04278 1.68847 1.27967 0.94396 0.97366 1.00663 1.20436 0.89085 0.86701 0.91005 1.21943 1.03676 0.99503 0.94374 1.23305 0.94695 0.99449 1.01649 1.23133 0.98961 0.97947 0.96718 1.21092 0.80387 0.97929 0.89421 0.95463 1.20985 1.10554 1.03083 1.21095 0.90149 1.25019 0.97426 0.94604 0.94693 1.69916 1.37050 1.18498 1.27129 0.87038 0.82710 0.81257 0.80009 1.21140 1.21571 1.14602 1.89052 1.39321 1.67646 1.30681 1.66047 1.04774 1.30859 1.15570 0.90853 0.91035 0.90537 0.81134 0.92774 0.91354 0.90849 0.90027 0.91411 0.90357 0.90972 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.31 36.00 0.37 -0.56 16 2 C 0.07 1.07 6.74 -84.23 -0.57 0.50 16 3 C -0.28 -3.89 11.13 29.12 0.32 -3.56 16 4 S 0.10 1.50 20.92 -107.50 -2.25 -0.75 16 5 C 0.08 1.40 6.20 -13.46 -0.08 1.32 16 6 C 0.17 3.30 1.23 -91.05 -0.11 3.19 16 7 C -0.14 -2.32 8.70 37.16 0.32 -2.00 16 8 C -0.15 -2.48 5.81 -24.78 -0.14 -2.62 16 9 C -0.13 -2.46 6.53 -24.48 -0.16 -2.62 16 10 C 0.17 4.00 2.67 -26.85 -0.07 3.93 16 11 H 0.03 0.67 7.49 -51.93 -0.39 0.29 16 12 C -0.52 -14.76 9.37 -34.44 -0.32 -15.08 16 13 H 0.08 2.40 8.00 -52.49 -0.42 1.98 16 14 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 15 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 16 Si 0.86 22.79 27.04 -169.99 -4.60 18.19 16 17 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.22 -5.98 5.54 56.52 0.31 -5.67 16 20 O -0.35 -8.42 7.67 -35.23 -0.27 -8.69 16 21 N -0.46 -8.83 10.52 -8.06 -0.08 -8.92 16 22 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 23 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.10 7.82 -51.93 -0.41 0.69 16 30 H 0.07 1.03 6.15 -51.92 -0.32 0.71 16 31 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 284.85 15.07 4.29 4.29 Total: -1.00 -32.84 284.85 -7.23 -40.07 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.56 Total: -2.47 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.54 Total: -15.01 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.69 Total: -35.63 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.27 Total: -8.69 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.60 Total: 18.19 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.25 Total: -0.75 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.84 -7.23 -40.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702010348.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.693 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds