Wall clock time and date at job start Mon Mar 30 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.33643 * 122.75513 * 2 1 4 4 S 1.76195 * 107.92892 * 179.80374 * 3 2 1 5 5 C 1.70984 * 90.28238 * 0.28193 * 4 3 2 6 6 C 1.50697 * 124.91892 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.82638 * 120.58245 * 6 5 4 8 8 C 1.54383 * 109.82796 * 359.70056 * 6 5 4 9 9 C 1.55308 * 102.25463 * 219.12868 * 8 6 5 10 10 C 1.54951 * 100.93819 * 34.13293 * 9 8 6 11 11 H 1.09000 * 110.31192 * 82.57262 * 10 9 8 12 12 C 1.50706 * 110.30536 * 204.64244 * 10 9 8 13 13 H 1.07995 * 120.00167 * 359.72244 * 12 10 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 10 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 89.99430 * 16 14 12 18 18 H 1.48494 * 109.47031 * 209.99977 * 16 14 12 19 19 H 1.48504 * 109.46680 * 329.99678 * 16 14 12 20 20 O 1.43232 * 109.83248 * 241.56964 * 6 5 4 21 21 N 1.29024 * 110.16426 * 359.71518 * 5 4 3 22 22 H 1.09008 * 109.47361 * 269.97645 * 1 2 3 23 23 H 1.09005 * 109.47356 * 29.97481 * 1 2 3 24 24 H 1.09004 * 109.47763 * 149.97504 * 1 2 3 25 25 H 1.08004 * 126.03238 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47088 * 299.12256 * 7 6 5 27 27 H 1.09006 * 109.47055 * 59.11249 * 7 6 5 28 28 H 1.08993 * 109.47391 * 179.11270 * 7 6 5 29 29 H 1.08995 * 110.85138 * 100.93748 * 8 6 5 30 30 H 1.09002 * 111.02403 * 337.39644 * 8 6 5 31 31 H 1.08999 * 111.12164 * 276.21809 * 9 8 6 32 32 H 1.08996 * 111.16673 * 152.06788 * 9 8 6 33 33 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9332 0.6731 0.0057 5 6 3.5039 -0.9820 -0.0008 6 6 4.4833 -2.1272 -0.0007 7 6 4.2595 -3.0013 1.2349 8 6 5.9274 -1.5813 -0.0013 9 6 6.6519 -2.5663 -0.9588 10 6 5.5205 -2.8783 -1.9706 11 1 5.4622 -2.0951 -2.7264 12 6 5.7562 -4.2166 -2.6224 13 1 6.6253 -4.8005 -2.3578 14 6 4.8650 -4.6929 -3.5604 15 7 5.0710 -5.8605 -4.1296 16 14 3.3659 -3.6794 -4.0239 17 1 3.7040 -2.7873 -5.1619 18 1 2.2579 -4.5861 -4.4179 19 1 2.9441 -2.8589 -2.8602 20 8 4.3161 -2.9099 -1.1885 21 7 2.2198 -1.1084 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3635 -0.8898 -0.5142 25 1 1.8392 2.1308 0.0004 26 1 4.4201 -2.4069 2.1343 27 1 3.2387 -3.3834 1.2296 28 1 4.9600 -3.8362 1.2212 29 1 6.3589 -1.6245 0.9987 30 1 5.9609 -0.5645 -0.3927 31 1 6.9666 -3.4668 -0.4314 32 1 7.4977 -2.0864 -1.4510 33 1 4.4442 -6.1955 -4.7898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702010348.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:27 Heat of formation + Delta-G solvation = -25.669707 kcal Electronic energy + Delta-G solvation = -17004.903308 eV Core-core repulsion = 14349.543902 eV Total energy + Delta-G solvation = -2655.359406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19632 -40.04086 -35.14477 -33.85855 -32.87275 -31.68810 -28.75954 -28.50739 -26.54360 -24.50795 -22.30250 -21.52988 -20.19140 -19.06791 -18.69178 -17.33124 -17.00750 -16.56027 -15.84604 -15.35721 -14.90969 -14.72144 -14.42829 -14.33636 -13.83391 -13.61377 -13.41101 -13.34795 -13.04007 -12.92629 -12.62715 -12.38816 -12.07651 -12.05126 -11.71349 -11.56613 -11.35119 -10.80969 -10.69988 -10.35398 -10.07326 -9.65771 -8.39522 -6.49489 -0.27146 0.40997 0.79006 1.27062 1.32178 1.63035 1.82877 2.36408 2.85861 3.04431 3.39301 3.69457 3.94617 3.96911 4.23366 4.27698 4.37902 4.43402 4.52626 4.67783 4.74014 4.80282 4.81861 4.89109 4.93951 5.03360 5.10106 5.26520 5.39870 5.43202 5.50844 6.17604 6.43891 6.69889 6.90304 7.26996 8.74522 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023307 B = 0.008782 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.059522 B = 3187.440688 C = 3825.411523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.036 3.964 3 C -0.265 4.265 4 S 0.156 5.844 5 C 0.031 3.969 6 C 0.157 3.843 7 C -0.131 4.131 8 C -0.137 4.137 9 C -0.125 4.125 10 C 0.163 3.837 11 H 0.022 0.978 12 C -0.523 4.523 13 H 0.052 0.948 14 C 0.035 3.965 15 N -0.934 5.934 16 Si 0.925 3.075 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.231 1.231 20 O -0.381 6.381 21 N -0.496 5.496 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.058 0.942 25 H 0.210 0.790 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 17.440 11.674 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.403 4.403 4 S 0.411 5.589 5 C -0.247 4.247 6 C 0.114 3.886 7 C -0.190 4.190 8 C -0.175 4.175 9 C -0.163 4.163 10 C 0.107 3.893 11 H 0.040 0.960 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.165 4.165 15 N -0.574 5.574 16 Si 0.751 3.249 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.154 1.154 20 O -0.301 6.301 21 N -0.212 5.212 22 H 0.107 0.893 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.227 0.773 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.346 17.251 11.506 21.004 hybrid contribution -1.516 -0.342 -0.772 1.735 sum -4.862 16.909 10.735 20.610 Atomic orbital electron populations 1.20427 0.85482 1.03688 1.03779 1.20911 0.99798 0.86516 1.02344 1.27317 0.95348 1.04764 1.12917 1.83447 1.07437 1.00672 1.67309 1.27716 0.94341 0.99293 1.03337 1.20750 0.91255 0.87278 0.89330 1.21907 1.02173 0.99688 0.95234 1.23281 0.92238 0.99059 1.02922 1.23049 0.98147 0.98892 0.96165 1.20939 0.82660 0.94966 0.90688 0.96021 1.21324 1.09212 1.04484 1.20978 0.93029 1.25755 1.00043 0.95501 0.95196 1.70026 1.38466 1.20244 1.28649 0.86082 0.79629 0.79760 0.79476 1.19980 1.21927 1.15363 1.88911 1.39006 1.69420 1.32759 1.66040 1.05752 1.33373 1.16020 0.89325 0.88269 0.92330 0.77290 0.89478 0.93514 0.91334 0.86450 0.89933 0.90912 0.88898 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.31 71.23 0.73 -0.88 16 2 C 0.04 1.04 6.74 41.52 0.28 1.32 16 3 C -0.26 -6.20 11.13 66.78 0.74 -5.46 16 4 S 0.16 3.98 20.92 -56.49 -1.18 2.80 16 5 C 0.03 1.09 6.20 88.52 0.55 1.64 16 6 C 0.16 5.81 1.23 -11.07 -0.01 5.80 16 7 C -0.13 -4.35 8.70 71.98 0.63 -3.73 16 8 C -0.14 -4.04 5.81 31.86 0.19 -3.86 16 9 C -0.12 -4.54 6.53 32.05 0.21 -4.33 16 10 C 0.16 7.82 2.67 30.52 0.08 7.90 16 11 H 0.02 1.07 7.49 -2.39 -0.02 1.05 16 12 C -0.52 -30.47 9.37 25.60 0.24 -30.23 16 13 H 0.05 3.21 8.00 -2.91 -0.02 3.19 16 14 C 0.04 2.14 5.47 84.66 0.46 2.60 16 15 N -0.93 -59.73 13.96 21.45 0.30 -59.43 16 16 Si 0.93 48.61 27.04 68.60 1.85 50.47 16 17 H -0.27 -13.70 7.11 99.48 0.71 -13.00 16 18 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 19 H -0.23 -12.33 5.54 99.48 0.55 -11.78 16 20 O -0.38 -18.48 7.67 -148.98 -1.14 -19.62 16 21 N -0.50 -18.53 10.52 -179.41 -1.89 -20.41 16 22 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.10 1.53 8.12 -2.38 -0.02 1.51 16 24 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.12 2.63 7.82 -2.39 -0.02 2.62 16 30 H 0.08 2.19 6.15 -2.39 -0.01 2.17 16 31 H 0.07 2.70 8.04 -2.39 -0.02 2.68 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.27 16.08 8.31 -92.70 -0.77 15.31 16 Total: -1.00 -74.04 284.85 2.98 -71.06 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.94 Total: 4.36 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 4.10 Total: -29.21 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.59 Total: -79.85 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.14 Total: -19.62 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.85 Total: 50.47 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.18 Total: 2.80 kcal Total: -74.04 2.98 -71.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702010348.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.389 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds