Wall clock time and date at job start Mon Mar 30 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38312 * 119.96916 * 2 1 4 4 C 1.38249 * 120.15637 * 180.02562 * 3 2 1 5 5 C 1.38162 * 120.09122 * 359.74104 * 4 3 2 6 6 C 1.38832 * 119.93913 * 0.51355 * 5 4 3 7 7 N 1.39751 * 120.08101 * 179.77181 * 6 5 4 8 8 C 1.46499 * 119.99590 * 359.44055 * 7 6 5 9 9 H 1.08999 * 109.47228 * 325.27884 * 8 7 6 10 10 C 1.52999 * 109.47341 * 85.28045 * 8 7 6 11 11 C 1.53001 * 109.47193 * 205.28005 * 8 7 6 12 12 C 1.50704 * 109.47083 * 64.99991 * 11 8 7 13 13 H 1.07998 * 119.99848 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99715 * 179.97438 * 12 11 8 15 15 N 1.31521 * 119.99439 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00367 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46861 * 89.99647 * 16 14 12 18 18 H 1.48494 * 109.47283 * 209.99831 * 16 14 12 19 19 H 1.48505 * 109.47099 * 330.00336 * 16 14 12 20 20 C 1.38165 * 119.96433 * 180.02562 * 2 1 3 21 21 Cl 1.73594 * 120.05298 * 359.96246 * 20 2 1 22 22 H 1.09000 * 109.46989 * 269.98091 * 1 2 3 23 23 H 1.08993 * 109.46902 * 29.98070 * 1 2 3 24 24 H 1.08997 * 109.46782 * 149.97918 * 1 2 3 25 25 H 1.08003 * 119.91776 * 0.04337 * 3 2 1 26 26 H 1.07994 * 119.95311 * 180.02562 * 4 3 2 27 27 H 1.08005 * 120.03014 * 180.25752 * 5 4 3 28 28 H 0.97001 * 120.00559 * 179.72514 * 7 6 5 29 29 H 1.08996 * 109.47098 * 180.02562 * 10 8 7 30 30 H 1.09001 * 109.46823 * 300.00095 * 10 8 7 31 31 H 1.08999 * 109.47091 * 59.99755 * 10 8 7 32 32 H 1.08996 * 109.47384 * 185.00021 * 11 8 7 33 33 H 1.08994 * 109.47052 * 305.00248 * 11 8 7 34 34 H 0.96996 * 119.99474 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1982 0.0000 4 6 3.5805 1.2027 -0.0005 5 6 4.2771 0.0096 0.0043 6 6 3.5875 -1.1954 -0.0010 7 7 4.2892 -2.4040 -0.0009 8 6 5.7542 -2.4004 -0.0076 9 1 6.1128 -1.5564 -0.5968 10 6 6.2704 -2.2765 1.4273 11 6 6.2646 -3.7051 -0.6224 12 6 5.8595 -3.7694 -2.0725 13 1 5.2949 -2.9603 -2.5118 14 6 6.2107 -4.8606 -2.8387 15 7 5.8576 -4.9163 -4.1044 16 14 7.1892 -6.2589 -2.0795 17 1 6.2559 -7.2674 -1.5163 18 1 8.0346 -6.8945 -3.1218 19 1 8.0549 -5.7265 -0.9967 20 6 2.1971 -1.1970 -0.0005 21 17 1.3296 -2.7006 -0.0002 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6561 2.1325 0.0007 26 1 4.1166 2.1402 -0.0001 27 1 5.3571 0.0143 0.0081 28 1 3.8063 -3.2453 -0.0006 29 1 7.3604 -2.2734 1.4223 30 1 5.9068 -1.3470 1.8653 31 1 5.9118 -3.1205 2.0166 32 1 7.3514 -3.7417 -0.5468 33 1 5.8345 -4.5516 -0.0872 34 1 6.1043 -5.6842 -4.6433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:39 Heat of formation + Delta-G solvation = 1.418077 kcal Electronic energy + Delta-G solvation = -16369.898151 eV Core-core repulsion = 13713.669653 eV Total energy + Delta-G solvation = -2656.228498 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38682 -36.58434 -35.99036 -33.12959 -32.06898 -31.34905 -28.14342 -27.81794 -26.63827 -23.06958 -22.09489 -21.24199 -19.43175 -17.02459 -16.75914 -16.13449 -15.50382 -14.37064 -14.32763 -14.00387 -13.78746 -13.27958 -12.99092 -12.67158 -12.36261 -12.15908 -12.11667 -11.92758 -11.75896 -11.30039 -11.23425 -11.04709 -10.85457 -10.51629 -10.29258 -9.92964 -9.88156 -9.48888 -9.22147 -8.59377 -8.33411 -6.91280 -6.07848 -4.06841 1.54034 1.87624 2.60725 3.25933 3.34302 3.35467 3.94679 4.05820 4.39816 4.98344 5.12907 5.25449 5.47598 5.52558 5.56950 5.65139 5.70228 5.80186 5.85129 5.90521 6.03057 6.23778 6.26045 6.39324 6.47814 6.59349 6.64214 6.82632 6.98925 7.05148 7.17310 7.68751 7.86005 8.28676 8.48273 8.98984 9.53142 11.05297 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.006337 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.956099 B = 4417.094179 C = 4841.657218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.191 4.191 4 C -0.062 4.062 5 C -0.203 4.203 6 C 0.251 3.749 7 N -0.709 5.709 8 C 0.154 3.846 9 H 0.075 0.925 10 C -0.167 4.167 11 C -0.021 4.021 12 C -0.518 4.518 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.126 4.126 21 Cl -0.078 7.078 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.404 0.596 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.015 0.985 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 9.533 10.708 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.031 4.031 3 C -0.211 4.211 4 C -0.081 4.081 5 C -0.226 4.226 6 C 0.141 3.859 7 N -0.333 5.333 8 C 0.049 3.951 9 H 0.093 0.907 10 C -0.226 4.226 11 C -0.059 4.059 12 C -0.556 4.556 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.158 4.158 21 Cl -0.049 7.049 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.147 0.853 28 H 0.241 0.759 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.143 9.236 10.538 15.300 hybrid contribution 0.318 -1.343 0.139 1.387 sum -5.825 7.894 10.677 14.500 Atomic orbital electron populations 1.20837 0.91092 1.03068 1.02352 1.19419 0.95816 0.91105 0.96769 1.20543 0.94025 0.96346 1.10232 1.20874 0.93984 0.97247 0.96002 1.20629 0.99991 0.90423 1.11531 1.17643 0.88944 0.87975 0.91298 1.45085 1.06125 1.04740 1.77361 1.21029 0.78711 1.01218 0.94095 0.90670 1.22329 1.00896 1.01293 0.98074 1.19885 0.96823 0.91919 0.97282 1.21053 1.35591 1.06252 0.92712 0.90697 1.25025 0.95535 0.98085 0.94708 1.69918 1.46598 1.30503 1.06727 0.86831 0.80693 0.82809 0.79228 1.20369 1.21357 1.19069 1.20156 0.90224 0.86784 1.18608 1.98310 1.76336 1.32800 1.97473 0.91103 0.91472 0.91015 0.86317 0.86199 0.85327 0.75925 0.92089 0.93167 0.92872 0.95029 0.96627 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.61 36.01 0.35 -1.01 16 2 C -0.03 -0.43 5.88 -104.62 -0.62 -1.05 16 3 C -0.19 -2.54 9.70 -39.55 -0.38 -2.92 16 4 C -0.06 -0.85 10.04 -39.61 -0.40 -1.24 16 5 C -0.20 -3.21 8.85 -39.39 -0.35 -3.56 16 6 C 0.25 4.43 6.64 -83.73 -0.56 3.88 16 7 N -0.71 -13.38 4.92 -52.13 -0.26 -13.64 16 8 C 0.15 2.91 2.21 -67.93 -0.15 2.76 16 9 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 10 C -0.17 -2.58 9.42 37.16 0.35 -2.23 16 11 C -0.02 -0.48 3.58 -27.88 -0.10 -0.58 16 12 C -0.52 -14.26 9.39 -34.44 -0.32 -14.59 16 13 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 16 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 20 C -0.13 -2.11 6.33 -39.31 -0.25 -2.35 16 21 Cl -0.08 -1.26 25.93 -51.86 -1.34 -2.61 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 25 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.13 1.94 6.10 -52.48 -0.32 1.62 16 28 H 0.40 7.95 7.28 -40.82 -0.30 7.65 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 33 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -29.74 294.31 -8.18 -37.93 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.60 Total: 5.07 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.52 Total: -21.05 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.52 Total: -40.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.34 Total: -2.61 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.74 -8.18 -37.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.344 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds