Wall clock time and date at job start Mon Mar 30 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38312 * 119.96916 * 2 1 4 4 C 1.38249 * 120.15637 * 180.02562 * 3 2 1 5 5 C 1.38162 * 120.09122 * 359.74104 * 4 3 2 6 6 C 1.38832 * 119.93913 * 0.51355 * 5 4 3 7 7 N 1.39751 * 120.08101 * 179.77181 * 6 5 4 8 8 C 1.46499 * 119.99590 * 359.44055 * 7 6 5 9 9 H 1.08999 * 109.47228 * 325.27884 * 8 7 6 10 10 C 1.52999 * 109.47341 * 85.28045 * 8 7 6 11 11 C 1.53001 * 109.47193 * 205.28005 * 8 7 6 12 12 C 1.50704 * 109.47083 * 64.99991 * 11 8 7 13 13 H 1.07998 * 119.99848 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99715 * 179.97438 * 12 11 8 15 15 N 1.31521 * 119.99439 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00367 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46861 * 89.99647 * 16 14 12 18 18 H 1.48494 * 109.47283 * 209.99831 * 16 14 12 19 19 H 1.48505 * 109.47099 * 330.00336 * 16 14 12 20 20 C 1.38165 * 119.96433 * 180.02562 * 2 1 3 21 21 Cl 1.73594 * 120.05298 * 359.96246 * 20 2 1 22 22 H 1.09000 * 109.46989 * 269.98091 * 1 2 3 23 23 H 1.08993 * 109.46902 * 29.98070 * 1 2 3 24 24 H 1.08997 * 109.46782 * 149.97918 * 1 2 3 25 25 H 1.08003 * 119.91776 * 0.04337 * 3 2 1 26 26 H 1.07994 * 119.95311 * 180.02562 * 4 3 2 27 27 H 1.08005 * 120.03014 * 180.25752 * 5 4 3 28 28 H 0.97001 * 120.00559 * 179.72514 * 7 6 5 29 29 H 1.08996 * 109.47098 * 180.02562 * 10 8 7 30 30 H 1.09001 * 109.46823 * 300.00095 * 10 8 7 31 31 H 1.08999 * 109.47091 * 59.99755 * 10 8 7 32 32 H 1.08996 * 109.47384 * 185.00021 * 11 8 7 33 33 H 1.08994 * 109.47052 * 305.00248 * 11 8 7 34 34 H 0.96996 * 119.99474 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1982 0.0000 4 6 3.5805 1.2027 -0.0005 5 6 4.2771 0.0096 0.0043 6 6 3.5875 -1.1954 -0.0010 7 7 4.2892 -2.4040 -0.0009 8 6 5.7542 -2.4004 -0.0076 9 1 6.1128 -1.5564 -0.5968 10 6 6.2704 -2.2765 1.4273 11 6 6.2646 -3.7051 -0.6224 12 6 5.8595 -3.7694 -2.0725 13 1 5.2949 -2.9603 -2.5118 14 6 6.2107 -4.8606 -2.8387 15 7 5.8576 -4.9163 -4.1044 16 14 7.1892 -6.2589 -2.0795 17 1 6.2559 -7.2674 -1.5163 18 1 8.0346 -6.8945 -3.1218 19 1 8.0549 -5.7265 -0.9967 20 6 2.1971 -1.1970 -0.0005 21 17 1.3296 -2.7006 -0.0002 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6561 2.1325 0.0007 26 1 4.1166 2.1402 -0.0001 27 1 5.3571 0.0143 0.0081 28 1 3.8063 -3.2453 -0.0006 29 1 7.3604 -2.2734 1.4223 30 1 5.9068 -1.3470 1.8653 31 1 5.9118 -3.1205 2.0166 32 1 7.3514 -3.7417 -0.5468 33 1 5.8345 -4.5516 -0.0872 34 1 6.1043 -5.6842 -4.6433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:38 Heat of formation + Delta-G solvation = -15.524892 kcal Electronic energy + Delta-G solvation = -16370.632853 eV Core-core repulsion = 13713.669653 eV Total energy + Delta-G solvation = -2656.963200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58882 -37.98118 -37.22739 -34.96261 -33.53845 -32.64957 -29.90088 -29.08174 -27.69821 -24.84455 -23.25299 -22.67817 -20.81686 -18.91278 -18.29028 -17.38915 -16.77001 -16.31107 -15.58587 -15.16007 -14.98902 -14.79027 -14.39732 -14.23945 -13.74573 -13.57292 -13.47125 -13.15345 -13.11057 -12.67198 -12.54120 -12.37207 -12.17575 -12.04679 -11.79076 -11.54125 -11.50725 -11.37633 -10.78573 -10.74881 -9.48476 -8.27729 -8.21192 -6.31276 0.38419 0.70545 1.35143 1.36466 1.37664 1.47652 2.35164 2.60411 2.89083 3.08982 3.86632 4.08139 4.16422 4.38620 4.42234 4.47225 4.52386 4.60871 4.81498 4.84066 4.90606 4.96432 5.02390 5.11384 5.21780 5.30884 5.33543 5.40743 5.56531 5.64808 5.70042 6.00932 6.27846 6.51306 6.76179 6.84991 7.32281 8.89206 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.006337 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.956099 B = 4417.094179 C = 4841.657218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.038 4.038 3 C -0.184 4.184 4 C -0.059 4.059 5 C -0.217 4.217 6 C 0.223 3.777 7 N -0.723 5.723 8 C 0.159 3.841 9 H 0.064 0.936 10 C -0.155 4.155 11 C -0.019 4.019 12 C -0.516 4.516 13 H 0.028 0.972 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.949 3.051 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.240 1.240 20 C -0.147 4.147 21 Cl -0.085 7.085 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.153 0.847 26 H 0.153 0.847 27 H 0.130 0.870 28 H 0.395 0.605 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.021 0.979 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 10.695 12.663 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.039 4.039 3 C -0.204 4.204 4 C -0.078 4.078 5 C -0.240 4.240 6 C 0.115 3.885 7 N -0.349 5.349 8 C 0.054 3.946 9 H 0.082 0.918 10 C -0.213 4.213 11 C -0.057 4.057 12 C -0.554 4.554 13 H 0.047 0.953 14 C -0.194 4.194 15 N -0.593 5.593 16 Si 0.772 3.228 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.163 1.163 20 C -0.179 4.179 21 Cl -0.057 7.057 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.080 0.920 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.148 0.852 28 H 0.230 0.770 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.859 10.442 12.519 17.323 hybrid contribution 0.116 -1.544 -0.525 1.635 sum -5.742 8.898 11.994 16.000 Atomic orbital electron populations 1.20890 0.89114 1.03683 1.03462 1.19864 0.97445 0.90736 0.95858 1.21001 0.94139 0.97169 1.08109 1.21285 0.94458 0.97676 0.94334 1.20840 1.00340 0.90750 1.12053 1.17953 0.89587 0.88065 0.92849 1.45029 1.05946 1.04945 1.78936 1.20887 0.79108 0.98609 0.95964 0.91786 1.22200 1.01699 1.02078 0.95372 1.19845 0.97370 0.94322 0.94146 1.21296 1.34171 1.04606 0.95298 0.95337 1.26007 0.97003 1.01316 0.95053 1.70090 1.48846 1.31729 1.08672 0.85685 0.79307 0.78945 0.78825 1.19745 1.21381 1.16342 1.20458 0.90233 0.87413 1.19766 1.98296 1.76323 1.33503 1.97574 0.89633 0.89218 0.92047 0.82948 0.82942 0.85181 0.76983 0.90542 0.91905 0.92610 0.94047 0.96078 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 9.61 71.24 0.68 -1.74 16 2 C -0.04 -1.03 5.88 -19.86 -0.12 -1.15 16 3 C -0.18 -4.34 9.70 22.29 0.22 -4.12 16 4 C -0.06 -1.45 10.04 22.25 0.22 -1.23 16 5 C -0.22 -6.68 8.85 22.39 0.20 -6.48 16 6 C 0.22 7.92 6.64 38.21 0.25 8.17 16 7 N -0.72 -27.80 4.92 -318.85 -1.57 -29.37 16 8 C 0.16 5.97 2.21 44.99 0.10 6.07 16 9 H 0.06 2.50 6.49 -2.39 -0.02 2.48 16 10 C -0.16 -4.48 9.42 71.98 0.68 -3.80 16 11 C -0.02 -0.85 3.58 29.85 0.11 -0.75 16 12 C -0.52 -29.17 9.39 25.60 0.24 -28.93 16 13 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 14 C 0.00 0.15 5.47 84.65 0.46 0.61 16 15 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 16 Si 0.95 43.82 27.47 68.60 1.88 45.71 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.24 -10.02 6.54 99.48 0.65 -9.36 16 20 C -0.15 -4.91 6.33 22.44 0.14 -4.77 16 21 Cl -0.09 -2.83 25.93 -2.72 -0.07 -2.90 16 22 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.09 1.47 8.08 -2.39 -0.02 1.46 16 24 H 0.06 1.43 6.90 -2.39 -0.02 1.41 16 25 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 26 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 27 H 0.13 3.85 6.10 -2.91 -0.02 3.84 16 28 H 0.40 16.05 7.28 -92.71 -0.67 15.37 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.66 7.69 -2.39 -0.02 1.64 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.77 7.20 -2.39 -0.02 1.75 16 33 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -66.39 294.31 4.10 -62.29 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.37 Total: 22.37 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.19 Total: -38.12 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -1.27 Total: -89.34 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.90 kcal Total: -66.39 4.10 -62.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.762 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds