Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 117.00303 * 2 1 4 4 C 1.38701 * 119.95293 * 0.02562 * 3 2 1 5 5 C 1.38257 * 120.13926 * 180.27547 * 4 3 2 6 6 C 1.38673 * 120.04778 * 359.44886 * 5 4 3 7 7 S 1.76200 * 120.04915 * 180.27500 * 6 5 4 8 8 C 1.81393 * 102.99890 * 0.29703 * 7 6 5 9 9 C 1.52999 * 109.47188 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46992 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00560 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99892 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99673 * 359.97438 * 12 10 9 14 14 Si 1.86788 * 120.00069 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47287 * 90.00076 * 14 12 10 16 16 H 1.48501 * 109.47339 * 209.99831 * 14 12 10 17 17 H 1.48506 * 109.47430 * 330.00034 * 14 12 10 18 18 C 1.39498 * 119.90271 * 0.57246 * 6 5 4 19 19 N 1.39984 * 120.06518 * 179.72672 * 18 6 5 20 20 C 1.38628 * 119.86179 * 359.70337 * 18 6 5 21 21 H 1.09006 * 109.46919 * 60.00267 * 1 2 3 22 22 H 1.08997 * 109.47188 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46878 * 300.00127 * 1 2 3 24 24 H 1.08002 * 119.92581 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.97364 * 179.69971 * 5 4 3 26 26 H 1.09003 * 109.47065 * 299.99765 * 8 7 6 27 27 H 1.08993 * 109.47625 * 59.99737 * 8 7 6 28 28 H 1.09003 * 109.46882 * 299.99824 * 9 8 7 29 29 H 1.09003 * 109.47428 * 59.99827 * 9 8 7 30 30 H 0.96997 * 119.99410 * 179.97438 * 13 12 10 31 31 H 0.97004 * 119.99612 * 179.97438 * 19 18 6 32 32 H 0.97003 * 120.00796 * 359.97415 * 19 18 6 33 33 H 1.08000 * 120.02314 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2901 2.3743 0.0005 5 6 1.9139 3.6082 -0.0052 6 6 3.2984 3.6864 0.0000 7 16 4.0933 5.2589 0.0000 8 6 2.7000 6.4204 0.0015 9 6 3.2319 7.8550 0.0010 10 6 2.0743 8.8199 0.0016 11 1 1.0606 8.4473 0.0026 12 6 2.3093 10.1786 0.0018 13 7 3.5438 10.6323 0.0020 14 14 0.8746 11.3746 0.0018 15 1 0.4941 11.6914 1.4019 16 1 1.2708 12.6230 -0.6980 17 1 -0.2820 10.7603 -0.6985 18 6 4.0609 2.5183 -0.0010 19 7 5.4587 2.5933 -0.0015 20 6 3.4315 1.2831 -0.0010 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.2117 2.3156 0.0005 25 1 1.3223 4.5118 -0.0097 26 1 2.0912 6.2587 -0.8882 27 1 2.0925 6.2581 0.8917 28 1 3.8409 8.0169 0.8904 29 1 3.8391 8.0171 -0.8896 30 1 3.7091 11.5881 0.0018 31 1 5.9880 1.7804 -0.0018 32 1 5.8982 3.4581 -0.0015 33 1 4.0193 0.3771 -0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712642500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = -27.611044 kcal Electronic energy + Delta-G solvation = -15567.394853 eV Core-core repulsion = 12911.951264 eV Total energy + Delta-G solvation = -2655.443589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99393 -37.72916 -34.20306 -33.64673 -31.06036 -30.47560 -28.43269 -27.26558 -25.32362 -22.73879 -22.05776 -20.88169 -18.17989 -17.13453 -16.85492 -16.53806 -15.75614 -15.47748 -15.30274 -14.53771 -14.04447 -13.92258 -13.61691 -13.29674 -13.11977 -12.53455 -12.33716 -11.90660 -11.59789 -11.45934 -11.06875 -10.86098 -10.62411 -10.44824 -10.18413 -9.75174 -9.66205 -9.13628 -8.84506 -8.45073 -7.88690 -6.60841 -6.09435 -4.14004 1.48042 1.65468 2.14678 3.07541 3.23733 3.27615 3.34195 3.37199 3.87607 4.05108 4.39556 4.86192 5.04820 5.05337 5.16099 5.26545 5.34216 5.43736 5.56692 5.92092 5.92265 6.04033 6.12817 6.31893 6.49041 6.58321 6.66877 7.36328 7.50302 7.50846 7.58458 7.81331 7.86102 8.23134 8.90549 9.50164 11.01480 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.004388 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.546102 B = 6379.675318 C = 7264.471480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.158 3.842 4 C -0.245 4.245 5 C -0.049 4.049 6 C -0.180 4.180 7 S -0.159 6.159 8 C -0.073 4.073 9 C 0.037 3.963 10 C -0.521 4.521 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.268 3.732 19 N -0.867 5.867 20 C -0.221 4.221 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.055 0.945 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.397 0.603 32 H 0.405 0.595 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -18.956 -0.015 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.110 3.890 4 C -0.268 4.268 5 C -0.074 4.074 6 C -0.296 4.296 7 S 0.084 5.916 8 C -0.221 4.221 9 C -0.002 4.002 10 C -0.561 4.561 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.157 3.843 19 N -0.407 5.407 20 C -0.247 4.247 21 H 0.074 0.926 22 H 0.114 0.886 23 H 0.074 0.926 24 H 0.142 0.858 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.225 0.775 32 H 0.236 0.764 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.811 -18.623 -0.021 18.641 hybrid contribution -2.001 0.547 0.010 2.074 sum -2.812 -18.077 -0.011 18.294 Atomic orbital electron populations 1.23013 0.78597 1.03468 1.01546 1.86027 1.21219 1.27302 1.88875 1.18564 0.91514 0.83769 0.95169 1.20867 0.99554 0.91792 1.14541 1.20853 0.92525 0.97798 0.96192 1.21226 0.96105 0.96448 1.15842 1.85096 1.18177 0.95363 1.92920 1.23944 0.95979 0.98446 1.03686 1.18920 0.97068 0.85569 0.98609 1.21071 0.92451 0.90725 1.51902 0.92370 1.25008 0.95827 0.98403 0.94965 1.69969 1.18990 1.14035 1.49918 0.86510 0.82364 0.80444 0.78202 1.20525 1.21080 1.19784 1.16890 0.83952 0.91186 0.92291 1.42563 1.02785 1.11168 1.84159 1.19481 0.91743 0.96063 1.17369 0.92644 0.88594 0.92635 0.85763 0.85223 0.90756 0.90755 0.95437 0.95428 0.92737 0.77451 0.76411 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.95 10.50 -19.71 -0.21 -4.16 16 3 C 0.16 2.18 6.68 -39.24 -0.26 1.92 16 4 C -0.25 -3.41 9.03 -39.40 -0.36 -3.76 16 5 C -0.05 -0.77 9.36 -39.41 -0.37 -1.14 16 6 C -0.18 -3.00 6.12 -38.95 -0.24 -3.23 16 7 S -0.16 -2.94 20.44 -107.50 -2.20 -5.13 16 8 C -0.07 -1.51 4.27 37.16 0.16 -1.35 16 9 C 0.04 0.95 4.98 -27.88 -0.14 0.81 16 10 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.69 5.46 -17.81 -0.10 1.60 16 13 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 14 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.27 3.93 6.76 -83.52 -0.56 3.37 16 19 N -0.87 -10.42 9.04 32.53 0.29 -10.13 16 20 C -0.22 -3.03 9.83 -39.27 -0.39 -3.42 16 21 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.12 1.43 6.28 -52.49 -0.33 1.10 16 25 H 0.13 2.03 5.86 -52.48 -0.31 1.72 16 26 H 0.07 1.49 7.73 -51.92 -0.40 1.09 16 27 H 0.07 1.49 7.76 -51.93 -0.40 1.09 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.40 3.55 8.85 -40.82 -0.36 3.19 16 32 H 0.41 5.06 7.37 -40.82 -0.30 4.76 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -30.70 293.22 -7.68 -38.38 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.13 Total: 4.72 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.58 Total: -18.69 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 1.03 Total: -35.72 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.21 Total: -4.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.20 Total: -5.13 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.70 -7.68 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712642500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.771 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds