Wall clock time and date at job start Mon Mar 30 2020 06:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 117.00303 * 2 1 4 4 C 1.38701 * 119.95293 * 0.02562 * 3 2 1 5 5 C 1.38257 * 120.13926 * 180.27547 * 4 3 2 6 6 C 1.38673 * 120.04778 * 359.44886 * 5 4 3 7 7 S 1.76200 * 120.04915 * 180.27500 * 6 5 4 8 8 C 1.81393 * 102.99890 * 0.29703 * 7 6 5 9 9 C 1.52999 * 109.47188 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46992 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00560 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99892 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99673 * 359.97438 * 12 10 9 14 14 Si 1.86788 * 120.00069 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47287 * 90.00076 * 14 12 10 16 16 H 1.48501 * 109.47339 * 209.99831 * 14 12 10 17 17 H 1.48506 * 109.47430 * 330.00034 * 14 12 10 18 18 C 1.39498 * 119.90271 * 0.57246 * 6 5 4 19 19 N 1.39984 * 120.06518 * 179.72672 * 18 6 5 20 20 C 1.38628 * 119.86179 * 359.70337 * 18 6 5 21 21 H 1.09006 * 109.46919 * 60.00267 * 1 2 3 22 22 H 1.08997 * 109.47188 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46878 * 300.00127 * 1 2 3 24 24 H 1.08002 * 119.92581 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.97364 * 179.69971 * 5 4 3 26 26 H 1.09003 * 109.47065 * 299.99765 * 8 7 6 27 27 H 1.08993 * 109.47625 * 59.99737 * 8 7 6 28 28 H 1.09003 * 109.46882 * 299.99824 * 9 8 7 29 29 H 1.09003 * 109.47428 * 59.99827 * 9 8 7 30 30 H 0.96997 * 119.99410 * 179.97438 * 13 12 10 31 31 H 0.97004 * 119.99612 * 179.97438 * 19 18 6 32 32 H 0.97003 * 120.00796 * 359.97415 * 19 18 6 33 33 H 1.08000 * 120.02314 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2901 2.3743 0.0005 5 6 1.9139 3.6082 -0.0052 6 6 3.2984 3.6864 0.0000 7 16 4.0933 5.2589 0.0000 8 6 2.7000 6.4204 0.0015 9 6 3.2319 7.8550 0.0010 10 6 2.0743 8.8199 0.0016 11 1 1.0606 8.4473 0.0026 12 6 2.3093 10.1786 0.0018 13 7 3.5438 10.6323 0.0020 14 14 0.8746 11.3746 0.0018 15 1 0.4941 11.6914 1.4019 16 1 1.2708 12.6230 -0.6980 17 1 -0.2820 10.7603 -0.6985 18 6 4.0609 2.5183 -0.0010 19 7 5.4587 2.5933 -0.0015 20 6 3.4315 1.2831 -0.0010 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.2117 2.3156 0.0005 25 1 1.3223 4.5118 -0.0097 26 1 2.0912 6.2587 -0.8882 27 1 2.0925 6.2581 0.8917 28 1 3.8409 8.0169 0.8904 29 1 3.8391 8.0171 -0.8896 30 1 3.7091 11.5881 0.0018 31 1 5.9880 1.7804 -0.0018 32 1 5.8982 3.4581 -0.0015 33 1 4.0193 0.3771 -0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712642500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:19 Heat of formation + Delta-G solvation = -46.897486 kcal Electronic energy + Delta-G solvation = -15568.231175 eV Core-core repulsion = 12911.951264 eV Total energy + Delta-G solvation = -2656.279912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00897 -38.73349 -35.86907 -35.10566 -32.96332 -31.62541 -29.51505 -28.06161 -27.31279 -23.93138 -23.51513 -22.37214 -19.18904 -18.69966 -18.19970 -18.03421 -16.60188 -16.59690 -16.42739 -16.27818 -15.66767 -15.50346 -14.79858 -14.36101 -14.26118 -14.21079 -13.71791 -13.24141 -12.96649 -12.96056 -12.44706 -12.42342 -12.23025 -11.87287 -11.71960 -11.39760 -11.35812 -10.98209 -10.60717 -10.01429 -8.98519 -8.23604 -7.92429 -6.36663 0.33601 0.55375 0.70118 1.41993 1.43150 1.54400 1.66138 2.30320 2.40745 2.75525 3.07363 3.10263 3.81413 4.15833 4.20134 4.26878 4.32817 4.44942 4.45209 4.49132 4.75952 4.81686 4.90505 4.96301 5.23905 5.36310 5.38240 5.47085 5.53082 5.72620 6.10298 6.38273 6.48520 6.76860 6.90974 7.32785 8.88298 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.004388 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.546102 B = 6379.675318 C = 7264.471480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.162 3.838 4 C -0.247 4.247 5 C -0.059 4.059 6 C -0.207 4.207 7 S -0.166 6.166 8 C -0.063 4.063 9 C 0.045 3.955 10 C -0.542 4.542 11 H 0.067 0.933 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.971 3.029 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.261 1.261 18 C 0.267 3.733 19 N -0.858 5.858 20 C -0.226 4.226 21 H 0.062 0.938 22 H 0.122 0.878 23 H 0.062 0.938 24 H 0.147 0.853 25 H 0.125 0.875 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.000 1.000 29 H 0.000 1.000 30 H 0.266 0.734 31 H 0.413 0.587 32 H 0.403 0.597 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -20.609 -0.013 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.114 3.886 4 C -0.270 4.270 5 C -0.083 4.083 6 C -0.323 4.323 7 S 0.076 5.924 8 C -0.211 4.211 9 C 0.006 3.994 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.795 3.205 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.185 1.185 18 C 0.155 3.845 19 N -0.399 5.399 20 C -0.252 4.252 21 H 0.081 0.919 22 H 0.140 0.860 23 H 0.081 0.919 24 H 0.165 0.835 25 H 0.143 0.857 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.233 0.767 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.402 -20.321 -0.018 20.462 hybrid contribution -1.509 0.874 0.010 1.743 sum -3.911 -19.447 -0.008 19.837 Atomic orbital electron populations 1.23348 0.76468 1.05568 1.02241 1.86034 1.23408 1.26359 1.88390 1.18730 0.91786 0.84361 0.93772 1.21071 1.00816 0.91052 1.14017 1.20934 0.92293 0.98552 0.96523 1.21214 0.96730 0.95385 1.18985 1.84954 1.17092 0.96602 1.93742 1.23566 0.96839 0.96529 1.04135 1.18685 0.96090 0.88705 0.95926 1.21523 0.93360 0.91631 1.51659 0.91463 1.25990 0.98702 1.00499 0.94319 1.70106 1.21406 1.14591 1.50916 0.85362 0.78887 0.77718 0.78574 1.19670 1.20735 1.18496 1.17009 0.84808 0.90919 0.91799 1.42545 1.02087 1.11889 1.83333 1.19734 0.92208 0.96304 1.16929 0.91922 0.85951 0.91912 0.83493 0.85700 0.90272 0.90261 0.98132 0.98118 0.92535 0.75630 0.76707 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.15 10.50 -93.45 -0.98 -8.13 16 3 C 0.16 4.10 6.68 22.49 0.15 4.26 16 4 C -0.25 -6.39 9.03 22.39 0.20 -6.19 16 5 C -0.06 -1.81 9.36 22.38 0.21 -1.60 16 6 C -0.21 -6.79 6.12 22.68 0.14 -6.65 16 7 S -0.17 -6.23 20.44 -56.49 -1.15 -7.38 16 8 C -0.06 -2.65 4.27 71.98 0.31 -2.35 16 9 C 0.04 2.37 4.98 29.85 0.15 2.52 16 10 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 11 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 12 C 0.00 0.20 5.46 84.66 0.46 0.66 16 13 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 14 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 C 0.27 7.49 6.76 38.24 0.26 7.75 16 19 N -0.86 -19.57 9.04 -50.99 -0.46 -20.03 16 20 C -0.23 -5.72 9.83 22.47 0.22 -5.50 16 21 H 0.06 0.78 7.66 -2.38 -0.02 0.76 16 22 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 24 H 0.15 3.01 6.28 -2.91 -0.02 2.99 16 25 H 0.13 3.86 5.86 -2.91 -0.02 3.85 16 26 H 0.08 3.23 7.73 -2.39 -0.02 3.21 16 27 H 0.08 3.23 7.76 -2.39 -0.02 3.21 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.41 6.64 8.85 -92.71 -0.82 5.82 16 32 H 0.40 9.82 7.37 -92.71 -0.68 9.14 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -66.23 293.22 2.79 -63.44 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.37 Total: 18.49 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.44 Total: -35.91 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -0.18 Total: -76.00 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.98 Total: -8.13 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -6.23 SS G_CDS: -1.15 Total: -7.38 kcal Total: -66.23 2.79 -63.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712642500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.545 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds