Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47126 * 2 1 4 4 C 1.50704 * 109.47319 * 239.99959 * 2 1 3 5 5 N 1.28795 * 124.99120 * 119.99771 * 4 2 1 6 6 C 1.33645 * 116.05758 * 179.97438 * 5 4 2 7 7 C 1.41160 * 122.85971 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99974 * 174.00930 * 7 6 5 9 9 C 1.39722 * 120.00242 * 354.00384 * 7 6 5 10 10 N 1.31020 * 119.99750 * 6.16173 * 9 7 6 11 11 Si 1.86798 * 120.00158 * 186.15795 * 9 7 6 12 12 H 1.48500 * 109.46913 * 90.00158 * 11 9 7 13 13 H 1.48493 * 109.47087 * 210.00188 * 11 9 7 14 14 H 1.48499 * 109.47153 * 330.00526 * 11 9 7 15 15 C 1.37691 * 114.27505 * 359.97438 * 6 5 4 16 16 S 1.70991 * 108.84108 * 359.76658 * 15 6 5 17 17 C 1.53001 * 109.47155 * 119.99754 * 2 1 3 18 18 H 1.09003 * 109.82547 * 179.43548 * 17 2 1 19 19 C 1.54386 * 109.90654 * 300.36848 * 17 2 1 20 20 C 1.55305 * 102.25173 * 140.91298 * 19 17 2 21 21 C 1.54946 * 100.94327 * 325.86910 * 20 19 17 22 22 O 1.43238 * 109.83067 * 58.54968 * 17 2 1 23 23 H 1.08999 * 109.47320 * 300.00152 * 1 2 3 24 24 H 1.09001 * 109.47590 * 60.00329 * 1 2 3 25 25 H 1.09009 * 109.46793 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00082 * 179.97438 * 10 9 7 27 27 H 1.08007 * 125.57616 * 179.97438 * 15 6 5 28 28 H 1.08999 * 110.84630 * 259.09937 * 19 17 2 29 29 H 1.08993 * 110.84836 * 22.52160 * 19 17 2 30 30 H 1.08999 * 111.12670 * 207.94605 * 20 19 17 31 31 H 1.09006 * 111.12513 * 83.78328 * 20 19 17 32 32 H 1.09004 * 110.30841 * 277.52878 * 21 20 19 33 33 H 1.08998 * 110.31582 * 155.36168 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7759 -0.1793 -2.1381 6 6 3.1186 -0.9748 -3.1559 7 6 3.9288 -0.5414 -4.2275 8 1 4.2576 -1.2474 -4.9758 9 6 4.3054 0.8009 -4.3203 10 7 4.0095 1.6327 -3.3521 11 14 5.2307 1.4096 -5.8245 12 1 4.2602 1.8687 -6.8504 13 1 6.1143 2.5390 -5.4386 14 1 6.0531 0.3051 -6.3802 15 6 2.6150 -2.2534 -3.0695 16 16 1.6962 -2.3891 -1.6338 17 6 2.0400 -0.7212 1.2493 18 1 3.1299 -0.7333 1.2501 19 6 1.5233 -0.0066 2.5165 20 6 1.1950 -1.1986 3.4563 21 6 0.7113 -2.2561 2.4323 22 8 1.5391 -2.0629 1.2743 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 4.2712 2.5645 -3.4163 27 1 2.7769 -3.0424 -3.7890 28 1 2.2988 0.6258 2.9486 29 1 0.6285 0.5754 2.2961 30 1 0.4018 -0.9392 4.1575 31 1 2.0860 -1.5407 3.9830 32 1 -0.3360 -2.0880 2.1810 33 1 0.8486 -3.2607 2.8322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720254071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -15.659725 kcal Electronic energy + Delta-G solvation = -16733.510769 eV Core-core repulsion = 14078.585428 eV Total energy + Delta-G solvation = -2654.925341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54630 -37.57685 -34.00465 -32.74115 -31.85922 -28.83947 -27.91455 -25.49039 -24.35006 -22.25774 -21.34601 -19.85978 -18.48660 -17.40525 -16.56132 -15.77034 -15.18098 -15.01919 -14.24648 -14.09972 -13.60493 -13.27494 -12.80892 -12.61846 -11.76606 -11.71552 -11.64339 -11.52571 -11.42898 -11.22173 -11.12936 -10.78527 -10.61940 -10.56386 -10.43752 -10.15401 -9.47411 -9.22285 -9.08673 -7.84475 -7.74556 -7.14444 -6.43244 -4.22558 2.45851 3.11253 3.15031 3.17807 3.19033 3.81000 4.06339 4.16611 4.39119 4.59620 4.86872 5.01464 5.23197 5.35009 5.38071 5.48157 5.61066 5.74493 5.78978 5.81177 5.85897 6.00267 6.08394 6.22849 6.33152 6.47364 6.70160 6.96638 7.22039 7.33934 7.40480 7.66376 8.30983 8.68335 9.01289 9.76394 10.44909 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037020 B = 0.006210 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.171187 B = 4508.073483 C = 4940.044105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.016 4.016 3 H 0.099 0.901 4 C 0.062 3.938 5 N -0.406 5.406 6 C 0.224 3.776 7 C -0.437 4.437 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.756 5.756 11 Si 0.909 3.091 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.466 4.466 16 S 0.003 5.997 17 C 0.089 3.911 18 H 0.081 0.919 19 C -0.153 4.153 20 C -0.155 4.155 21 C 0.047 3.953 22 O -0.357 6.357 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.271 0.729 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -0.818 11.618 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 H 0.117 0.883 4 C -0.222 4.222 5 N -0.120 5.120 6 C 0.102 3.898 7 C -0.472 4.472 8 H 0.099 0.901 9 C -0.148 4.148 10 N -0.380 5.380 11 Si 0.733 3.267 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.187 1.187 15 C -0.605 4.605 16 S 0.252 5.748 17 C 0.030 3.970 18 H 0.099 0.901 19 C -0.191 4.191 20 C -0.193 4.193 21 C -0.029 4.029 22 O -0.276 6.276 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.015 -0.985 11.975 13.437 hybrid contribution 1.024 0.711 -1.439 1.903 sum -4.992 -0.274 10.537 11.663 Atomic orbital electron populations 1.21863 0.94293 1.02475 1.01350 1.19960 0.95725 0.98832 0.89347 0.88280 1.27444 1.01803 0.93132 0.99790 1.67422 1.09907 1.33461 1.01169 1.17984 0.93831 0.86431 0.91598 1.18919 1.27334 0.93864 1.07083 0.90075 1.25953 0.94993 0.96992 0.96890 1.70125 1.34429 1.04166 1.29250 0.86316 0.79681 0.78885 0.81776 1.19583 1.20347 1.18743 1.25324 1.24089 1.03347 1.07721 1.82778 1.55328 1.16706 1.19970 1.22760 0.98534 0.82368 0.93341 0.90086 1.23266 1.02489 0.98274 0.95040 1.23243 1.01828 0.95928 0.98275 1.23353 0.94920 0.98921 0.85752 1.88617 1.66345 1.28659 1.43952 0.92509 0.92323 0.91824 0.91854 0.84901 0.90209 0.89802 0.90405 0.90649 0.92561 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.69 37.15 0.32 -1.89 16 2 C -0.02 -0.29 2.75 -91.77 -0.25 -0.54 16 3 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 4 C 0.06 1.47 6.16 -13.55 -0.08 1.39 16 5 N -0.41 -11.40 8.49 -8.36 -0.07 -11.47 16 6 C 0.22 6.58 6.46 -86.17 -0.56 6.02 16 7 C -0.44 -12.64 9.23 -37.92 -0.35 -12.99 16 8 H 0.08 2.24 7.85 -52.48 -0.41 1.83 16 9 C 0.07 1.98 5.49 -17.34 -0.10 1.88 16 10 N -0.76 -21.04 11.72 55.54 0.65 -20.39 16 11 Si 0.91 19.83 29.56 -169.99 -5.03 14.80 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 C -0.47 -12.67 10.98 30.53 0.34 -12.34 16 16 S 0.00 0.08 21.26 -107.50 -2.29 -2.21 16 17 C 0.09 1.41 3.24 -26.00 -0.08 1.32 16 18 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 19 C -0.15 -1.76 6.35 -24.78 -0.16 -1.91 16 20 C -0.16 -1.54 7.16 -24.48 -0.18 -1.71 16 21 C 0.05 0.57 7.76 38.18 0.30 0.86 16 22 O -0.36 -5.87 8.49 -35.23 -0.30 -6.17 16 23 H 0.06 0.70 6.08 -51.93 -0.32 0.38 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 1.02 7.52 -51.92 -0.39 0.63 16 26 H 0.27 6.85 8.30 -40.82 -0.34 6.51 16 27 H 0.13 3.47 8.06 -52.48 -0.42 3.05 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.89 5.75 -51.93 -0.30 0.59 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -31.84 283.79 -7.91 -39.75 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.36 Total: 1.32 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -0.80 Total: -19.92 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.58 Total: -31.86 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.30 Total: -6.17 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.29 Total: -2.21 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.84 -7.91 -39.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720254071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.090 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds