Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39048 * 121.11937 * 172.51077 * 3 2 1 5 5 C 1.39113 * 119.57676 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.04796 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 244.99869 * 6 5 4 8 8 N 1.46900 * 109.47395 * 5.00331 * 6 5 4 9 9 C 1.50702 * 109.46869 * 124.99924 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.31069 * 121.90489 * 0.27520 * 5 4 3 18 18 C 1.33594 * 121.83997 * 359.43457 * 17 5 4 19 19 C 1.40688 * 120.96737 * 180.27694 * 18 17 5 20 20 C 1.36075 * 119.74259 * 180.26794 * 19 18 17 21 21 C 1.39326 * 121.04673 * 0.02562 * 20 19 18 22 22 C 1.36267 * 120.82714 * 0.02562 * 21 20 19 23 23 C 1.40065 * 119.64377 * 359.96303 * 22 21 20 24 24 H 1.08000 * 120.21025 * 359.97438 * 4 3 2 25 25 H 1.00907 * 110.99792 * 296.04461 * 8 6 5 26 26 H 1.00903 * 111.00086 * 59.99217 * 8 6 5 27 27 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 28 28 H 1.08000 * 120.12483 * 0.25907 * 19 18 17 29 29 H 1.08004 * 119.47697 * 179.97438 * 20 19 18 30 30 H 1.07998 * 119.58544 * 180.02562 * 21 20 19 31 31 H 1.07999 * 120.17776 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2861 1.1812 -0.1552 5 6 4.6767 1.1447 -0.1497 6 6 5.4431 2.4312 -0.3194 7 1 6.0022 2.4005 -1.2545 8 7 4.5041 3.5606 -0.3472 9 6 6.3997 2.6017 0.8325 10 1 6.4482 1.8531 1.6095 11 6 7.2175 3.7102 0.8912 12 7 8.0562 3.8563 1.8937 13 14 7.1340 5.0047 -0.4530 14 1 6.1288 6.0346 -0.0867 15 1 8.4651 5.6449 -0.6070 16 1 6.7419 4.3637 -1.7338 17 7 5.3397 0.0232 -0.0071 18 6 4.7173 -1.1481 0.1523 19 6 5.4474 -2.3404 0.3096 20 6 4.7878 -3.5204 0.4648 21 6 3.3954 -3.5700 0.4704 22 6 2.6557 -2.4356 0.3196 23 6 3.3019 -1.2035 0.1578 24 1 2.7675 2.1204 -0.2791 25 1 3.8931 3.5032 -1.1483 26 1 3.9732 3.6107 0.5094 27 1 8.6312 4.6363 1.9351 28 1 6.5272 -2.3191 0.3070 29 1 5.3525 -4.4332 0.5848 30 1 2.8961 -4.5194 0.5957 31 1 1.5769 -2.4861 0.3259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725383482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = 92.820121 kcal Electronic energy + Delta-G solvation = -17256.750521 eV Core-core repulsion = 14503.378019 eV Total energy + Delta-G solvation = -2753.372502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85716 -37.58273 -36.89809 -34.59337 -33.41347 -31.94641 -30.15116 -29.81176 -26.69428 -24.94338 -23.59675 -22.74651 -21.16233 -18.37132 -17.69200 -17.21717 -16.96915 -15.56106 -15.12402 -14.77144 -14.49980 -14.19845 -14.14890 -13.84570 -13.42604 -13.35508 -13.10372 -12.67006 -12.46831 -12.01051 -11.67435 -11.54274 -11.33142 -10.71103 -10.49673 -10.32620 -9.91570 -9.41992 -9.21465 -8.59894 -8.55655 -8.14616 -7.93913 -6.03687 -4.14247 0.12437 0.90766 1.64975 2.44449 2.93644 3.16765 3.54858 3.58394 3.61391 3.69969 4.23906 4.40812 4.59803 4.63302 4.76490 4.80894 5.07762 5.16640 5.20991 5.29078 5.53183 5.59548 5.72941 5.84306 5.94305 6.11341 6.30717 6.39934 6.56307 6.73213 6.86334 7.25721 7.44353 7.86214 8.13274 8.33091 8.55632 8.97801 9.56683 11.05611 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.006637 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.924250 B = 4217.733335 C = 5107.398775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.264 3.736 3 C 0.016 3.984 4 C -0.115 4.115 5 C 0.169 3.831 6 C 0.225 3.775 7 H 0.072 0.928 8 N -0.840 5.840 9 C -0.508 4.508 10 H 0.077 0.923 11 C 0.082 3.918 12 N -0.895 5.895 13 Si 0.935 3.065 14 H -0.280 1.280 15 H -0.317 1.317 16 H -0.274 1.274 17 N -0.428 5.428 18 C 0.137 3.863 19 C -0.080 4.080 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.105 4.105 23 C -0.082 4.082 24 H 0.144 0.856 25 H 0.314 0.686 26 H 0.339 0.661 27 H 0.265 0.735 28 H 0.141 0.859 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -11.480 -4.726 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.052 4.052 3 C 0.005 3.995 4 C -0.139 4.139 5 C 0.015 3.985 6 C 0.115 3.885 7 H 0.089 0.911 8 N -0.371 5.371 9 C -0.546 4.546 10 H 0.095 0.905 11 C -0.122 4.122 12 N -0.532 5.532 13 Si 0.767 3.233 14 H -0.206 1.206 15 H -0.247 1.247 16 H -0.199 1.199 17 N -0.137 5.137 18 C 0.014 3.986 19 C -0.098 4.098 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.086 4.086 24 H 0.162 0.838 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.516 -11.001 -4.698 14.684 hybrid contribution -1.316 -0.032 -0.377 1.369 sum -9.832 -11.034 -5.075 15.625 Atomic orbital electron populations 1.81233 1.11628 1.07393 1.08356 1.25400 0.92294 0.93621 0.93858 1.16157 0.84446 0.94414 1.04526 1.22341 0.95863 0.97546 0.98168 1.23182 0.89689 0.96560 0.89076 1.18803 0.90279 0.78872 1.00532 0.91096 1.59419 1.24098 1.46857 1.06739 1.20598 1.18570 1.08118 1.07340 0.90482 1.25004 0.93545 0.97816 0.95853 1.69939 1.23038 1.29100 1.31128 0.85910 0.74363 0.81017 0.82054 1.20599 1.24670 1.19908 1.67927 1.39369 0.96956 1.09410 1.19042 0.88652 0.93336 0.97580 1.20939 1.00839 0.90012 0.98028 1.20884 0.94308 0.98053 0.99637 1.20876 0.94145 0.98221 0.99809 1.20813 0.99554 0.91607 1.00421 1.18558 0.94273 0.92747 1.03047 0.83821 0.87358 0.84579 0.92597 0.84077 0.85251 0.85664 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.17 18.54 41.84 0.78 -5.39 16 2 C 0.26 3.70 14.16 -22.47 -0.32 3.39 16 3 C 0.02 0.23 5.79 -106.27 -0.62 -0.38 16 4 C -0.12 -1.76 8.77 -38.96 -0.34 -2.10 16 5 C 0.17 3.17 6.12 -82.59 -0.51 2.66 16 6 C 0.23 4.79 2.57 -70.02 -0.18 4.61 16 7 H 0.07 1.58 7.19 -51.93 -0.37 1.21 16 8 N -0.84 -15.48 6.06 -6.65 -0.04 -15.52 16 9 C -0.51 -13.45 9.09 -34.44 -0.31 -13.77 16 10 H 0.08 2.28 7.92 -52.49 -0.42 1.87 16 11 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 13 Si 0.93 22.62 26.04 -169.99 -4.43 18.20 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 16 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 17 N -0.43 -8.33 9.86 -7.28 -0.07 -8.40 16 18 C 0.14 2.26 6.61 -84.88 -0.56 1.70 16 19 C -0.08 -1.09 9.98 -39.43 -0.39 -1.48 16 20 C -0.11 -1.17 9.94 -39.95 -0.40 -1.57 16 21 C -0.11 -1.18 9.96 -39.89 -0.40 -1.57 16 22 C -0.11 -1.29 9.40 -39.61 -0.37 -1.66 16 23 C -0.08 -1.22 5.76 -106.51 -0.61 -1.83 16 24 H 0.14 1.84 6.12 -52.49 -0.32 1.52 16 25 H 0.31 4.66 8.06 -39.29 -0.32 4.35 16 26 H 0.34 5.93 8.23 -39.29 -0.32 5.60 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.34 7.24 -52.49 -0.38 0.96 16 LS Contribution 276.09 15.07 4.16 4.16 Total: -1.00 -30.88 276.09 -6.50 -37.38 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -2.57 Total: 5.33 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -5.11 Total: -9.83 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 1.44 Total: -55.24 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.43 Total: 18.20 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.88 -6.50 -37.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725383482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.200 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds