Wall clock time and date at job start Mon Mar 30 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38296 * 119.91915 * 2 1 4 4 C 1.38114 * 120.09018 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.94396 * 359.97438 * 4 3 2 6 6 N 1.39748 * 120.08246 * 180.02562 * 5 4 3 7 7 C 1.46504 * 120.00135 * 359.97438 * 6 5 4 8 8 H 1.09008 * 109.46847 * 34.99955 * 7 6 5 9 9 C 1.52994 * 109.47145 * 275.00295 * 7 6 5 10 10 C 1.52997 * 109.47349 * 154.99797 * 7 6 5 11 11 C 1.50701 * 109.47212 * 295.00023 * 10 7 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38991 * 119.84297 * 0.27162 * 5 4 3 20 20 Cl 1.73595 * 120.04915 * 179.70796 * 19 5 4 21 21 C 1.38214 * 119.90073 * 359.47615 * 19 5 4 22 22 H 1.09003 * 109.47378 * 89.99814 * 1 2 3 23 23 H 1.09004 * 109.47052 * 210.00166 * 1 2 3 24 24 H 1.09003 * 109.47226 * 329.99547 * 1 2 3 25 25 H 1.07997 * 119.95646 * 359.97438 * 3 2 1 26 26 H 1.08009 * 120.02885 * 179.97438 * 4 3 2 27 27 H 0.97006 * 120.00373 * 179.97438 * 6 5 4 28 28 H 1.09008 * 109.46970 * 299.99584 * 9 7 6 29 29 H 1.08996 * 109.47654 * 59.99346 * 9 7 6 30 30 H 1.09000 * 109.47476 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 175.00025 * 10 7 6 32 32 H 1.09001 * 109.46832 * 55.00216 * 10 7 6 33 33 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 34 34 H 1.08002 * 119.96681 * 180.27684 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5779 1.2028 -0.0005 5 6 4.2747 0.0015 -0.0005 6 7 5.6722 0.0023 -0.0005 7 6 6.4040 1.2714 -0.0011 8 1 5.8561 2.0070 0.5881 9 6 6.5498 1.7754 -1.4383 10 6 7.7913 1.0605 0.6086 11 6 7.6497 0.6826 2.0606 12 1 6.6683 0.6006 2.5041 13 6 8.7730 0.4405 2.8227 14 7 9.9679 0.5399 2.2825 15 14 8.5974 -0.0285 4.6222 16 1 7.8119 -1.2841 4.7322 17 1 9.9439 -0.2331 5.2141 18 1 7.8968 1.0591 5.3513 19 6 3.5789 -1.2017 -0.0057 20 17 4.4445 -2.7065 -0.0134 21 6 2.1967 -1.1984 0.0001 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6547 2.1328 -0.0004 26 1 4.1156 2.1395 -0.0010 27 1 6.1577 -0.8375 -0.0002 28 1 7.0976 1.0399 -2.0274 29 1 5.5615 1.9256 -1.8727 30 1 7.0939 2.7199 -1.4387 31 1 8.3677 1.9821 0.5276 32 1 8.3056 0.2620 0.0738 33 1 10.7582 0.3699 2.8188 34 1 1.6550 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829172469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:53 Heat of formation + Delta-G solvation = -4.209489 kcal Electronic energy + Delta-G solvation = -16255.591843 eV Core-core repulsion = 13599.119315 eV Total energy + Delta-G solvation = -2656.472528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37901 -36.49749 -36.08564 -33.23049 -31.91564 -30.46112 -29.55253 -27.45989 -25.46880 -23.20140 -22.76113 -21.00230 -19.64228 -17.20773 -16.33417 -15.88306 -15.25894 -14.53221 -14.22760 -13.88884 -13.74146 -13.50429 -13.07337 -12.75115 -12.32103 -12.18121 -11.85541 -11.69045 -11.51912 -11.29085 -11.13973 -10.92603 -10.76142 -10.65450 -10.45814 -10.29220 -9.62909 -9.39855 -9.09064 -8.51754 -8.42987 -6.83037 -6.05965 -4.08262 1.53849 1.82677 2.57172 3.31575 3.35716 3.39495 3.98573 4.04630 4.42673 5.02835 5.10041 5.30864 5.38322 5.43267 5.66500 5.69004 5.73795 5.84396 5.93979 5.97431 6.06057 6.19227 6.34545 6.43491 6.52590 6.61402 6.75898 6.84098 7.07677 7.43570 7.52115 7.90322 7.95088 8.31547 8.33327 8.97377 9.56618 11.04937 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.006206 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.039438 B = 4510.649916 C = 4786.006692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.162 4.162 3 C -0.063 4.063 4 C -0.194 4.194 5 C 0.245 3.755 6 N -0.708 5.708 7 C 0.144 3.856 8 H 0.070 0.930 9 C -0.165 4.165 10 C 0.016 3.984 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.124 4.124 20 Cl -0.081 7.081 21 C -0.059 4.059 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.404 0.596 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.021 0.979 33 H 0.261 0.739 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -0.696 -6.309 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.165 4.165 3 C -0.082 4.082 4 C -0.217 4.217 5 C 0.134 3.866 6 N -0.332 5.332 7 C 0.040 3.960 8 H 0.088 0.912 9 C -0.223 4.223 10 C -0.021 4.021 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.156 4.156 20 Cl -0.052 7.052 21 C -0.079 4.079 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.148 0.852 27 H 0.241 0.759 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.277 -0.651 -6.264 15.605 hybrid contribution 0.390 -0.762 1.086 1.383 sum -13.887 -1.412 -5.177 14.888 Atomic orbital electron populations 1.20575 0.91445 1.02035 1.01431 1.19403 0.95606 0.92403 1.09050 1.20786 0.93384 0.97223 0.96833 1.20647 0.94049 0.96345 1.10680 1.17706 0.85206 0.91945 0.91739 1.45204 1.01159 1.09863 1.76941 1.21288 0.96022 0.84501 0.94214 0.91239 1.22292 1.00736 1.01161 0.98126 1.19388 0.88984 0.98047 0.95707 1.21122 0.92591 1.46869 0.94977 0.92540 1.24985 0.95343 0.95456 0.98431 1.69942 0.97512 1.49532 1.36424 0.86675 0.77071 0.79169 0.85235 1.20226 1.21310 1.20243 1.20284 0.92249 0.85313 1.17766 1.98325 1.77171 1.32173 1.97540 1.20550 0.91127 0.98066 0.98134 0.92164 0.92261 0.92132 0.86259 0.85189 0.75887 0.92857 0.93591 0.92102 0.94967 0.96071 0.92897 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.16 -2.11 5.88 -104.59 -0.62 -2.73 16 3 C -0.06 -0.85 9.69 -39.61 -0.38 -1.24 16 4 C -0.19 -3.04 8.85 -39.39 -0.35 -3.39 16 5 C 0.24 4.26 6.64 -83.73 -0.56 3.71 16 6 N -0.71 -13.47 4.92 -52.13 -0.26 -13.72 16 7 C 0.14 2.81 2.21 -67.93 -0.15 2.66 16 8 H 0.07 1.36 6.49 -51.92 -0.34 1.02 16 9 C -0.16 -2.71 9.43 37.15 0.35 -2.36 16 10 C 0.02 0.39 4.52 -27.88 -0.13 0.26 16 11 C -0.52 -14.07 8.84 -34.44 -0.30 -14.38 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.12 -2.04 6.34 -39.31 -0.25 -2.29 16 20 Cl -0.08 -1.30 27.60 -51.86 -1.43 -2.73 16 21 C -0.06 -0.84 9.48 -39.58 -0.38 -1.22 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 24 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 26 H 0.13 1.96 6.12 -52.48 -0.32 1.64 16 27 H 0.40 8.07 7.28 -40.82 -0.30 7.78 16 28 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -28.59 300.64 -8.63 -37.22 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.70 Total: 3.50 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.49 Total: -19.99 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.48 Total: -39.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.43 Total: -2.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.59 -8.63 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.011 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds