Wall clock time and date at job start Mon Mar 30 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38296 * 119.91915 * 2 1 4 4 C 1.38114 * 120.09018 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.94396 * 359.97438 * 4 3 2 6 6 N 1.39748 * 120.08246 * 180.02562 * 5 4 3 7 7 C 1.46504 * 120.00135 * 359.97438 * 6 5 4 8 8 H 1.09008 * 109.46847 * 34.99955 * 7 6 5 9 9 C 1.52994 * 109.47145 * 275.00295 * 7 6 5 10 10 C 1.52997 * 109.47349 * 154.99797 * 7 6 5 11 11 C 1.50701 * 109.47212 * 295.00023 * 10 7 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38991 * 119.84297 * 0.27162 * 5 4 3 20 20 Cl 1.73595 * 120.04915 * 179.70796 * 19 5 4 21 21 C 1.38214 * 119.90073 * 359.47615 * 19 5 4 22 22 H 1.09003 * 109.47378 * 89.99814 * 1 2 3 23 23 H 1.09004 * 109.47052 * 210.00166 * 1 2 3 24 24 H 1.09003 * 109.47226 * 329.99547 * 1 2 3 25 25 H 1.07997 * 119.95646 * 359.97438 * 3 2 1 26 26 H 1.08009 * 120.02885 * 179.97438 * 4 3 2 27 27 H 0.97006 * 120.00373 * 179.97438 * 6 5 4 28 28 H 1.09008 * 109.46970 * 299.99584 * 9 7 6 29 29 H 1.08996 * 109.47654 * 59.99346 * 9 7 6 30 30 H 1.09000 * 109.47476 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47153 * 175.00025 * 10 7 6 32 32 H 1.09001 * 109.46832 * 55.00216 * 10 7 6 33 33 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 34 34 H 1.08002 * 119.96681 * 180.27684 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5779 1.2028 -0.0005 5 6 4.2747 0.0015 -0.0005 6 7 5.6722 0.0023 -0.0005 7 6 6.4040 1.2714 -0.0011 8 1 5.8561 2.0070 0.5881 9 6 6.5498 1.7754 -1.4383 10 6 7.7913 1.0605 0.6086 11 6 7.6497 0.6826 2.0606 12 1 6.6683 0.6006 2.5041 13 6 8.7730 0.4405 2.8227 14 7 9.9679 0.5399 2.2825 15 14 8.5974 -0.0285 4.6222 16 1 7.8119 -1.2841 4.7322 17 1 9.9439 -0.2331 5.2141 18 1 7.8968 1.0591 5.3513 19 6 3.5789 -1.2017 -0.0057 20 17 4.4445 -2.7065 -0.0134 21 6 2.1967 -1.1984 0.0001 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6547 2.1328 -0.0004 26 1 4.1156 2.1395 -0.0010 27 1 6.1577 -0.8375 -0.0002 28 1 7.0976 1.0399 -2.0274 29 1 5.5615 1.9256 -1.8727 30 1 7.0939 2.7199 -1.4387 31 1 8.3677 1.9821 0.5276 32 1 8.3056 0.2620 0.0738 33 1 10.7582 0.3699 2.8188 34 1 1.6550 -2.1327 0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829172469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:53 Heat of formation + Delta-G solvation = -18.986151 kcal Electronic energy + Delta-G solvation = -16256.232607 eV Core-core repulsion = 13599.119315 eV Total energy + Delta-G solvation = -2657.113292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57774 -37.92435 -37.30974 -35.05274 -33.45342 -31.59695 -30.79634 -29.28785 -26.58172 -25.04755 -24.01520 -22.22603 -21.10460 -18.62739 -18.33300 -17.21324 -16.55831 -16.35179 -15.52995 -15.03801 -14.98590 -14.75302 -14.47228 -14.10317 -13.61386 -13.56460 -13.34278 -13.18094 -12.91060 -12.66988 -12.64302 -12.48297 -12.36688 -12.10141 -11.92001 -11.63221 -11.34836 -11.24929 -10.65044 -10.57343 -9.67051 -8.21922 -8.11511 -6.29409 0.38933 0.67639 1.35242 1.36905 1.38176 1.46074 2.38460 2.63074 2.86852 3.13890 3.90202 4.11392 4.21383 4.39516 4.45524 4.47964 4.53960 4.62149 4.85028 4.93922 4.99880 5.04437 5.10774 5.20199 5.26015 5.35740 5.42074 5.43621 5.54741 5.76208 5.79116 6.01916 6.21359 6.53099 6.84035 6.86162 7.38948 8.89747 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.006206 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.039438 B = 4510.649916 C = 4786.006692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.152 4.152 3 C -0.062 4.062 4 C -0.203 4.203 5 C 0.216 3.784 6 N -0.722 5.722 7 C 0.157 3.843 8 H 0.069 0.931 9 C -0.154 4.154 10 C 0.022 3.978 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.138 4.138 20 Cl -0.088 7.088 21 C -0.066 4.066 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.150 0.850 26 H 0.132 0.868 27 H 0.395 0.605 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.013 0.987 32 H -0.003 1.003 33 H 0.263 0.737 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 -0.299 -6.070 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.226 4.226 5 C 0.109 3.891 6 N -0.347 5.347 7 C 0.052 3.948 8 H 0.087 0.913 9 C -0.212 4.212 10 C -0.015 4.015 11 C -0.562 4.562 12 H 0.070 0.930 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.778 3.222 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.169 4.169 20 Cl -0.060 7.060 21 C -0.085 4.085 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.168 0.832 26 H 0.149 0.851 27 H 0.230 0.770 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.984 -0.245 -6.029 18.024 hybrid contribution 1.088 -0.886 0.988 1.716 sum -15.895 -1.132 -5.042 16.714 Atomic orbital electron populations 1.20659 0.88658 1.03328 1.02772 1.19883 0.97577 0.91676 1.06322 1.21164 0.92578 0.98847 0.95496 1.20837 0.95188 0.95756 1.10800 1.17953 0.84412 0.93149 0.93609 1.45043 1.01980 1.08811 1.78902 1.20978 0.93109 0.85058 0.95621 0.91343 1.22176 1.01880 1.01165 0.96027 1.19244 0.91666 0.95994 0.94633 1.21424 0.92265 1.46152 0.96394 0.93013 1.25782 0.95124 0.95628 1.02600 1.70055 0.98167 1.50766 1.37948 0.85697 0.77189 0.78906 0.80435 1.20065 1.20774 1.19365 1.20532 0.93148 0.84823 1.18438 1.98316 1.77563 1.32492 1.97615 1.20865 0.90313 0.99594 0.97751 0.90673 0.91286 0.90637 0.83204 0.85057 0.76995 0.93400 0.91687 0.91247 0.96881 0.98502 0.92857 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.01 71.23 0.71 -0.77 16 2 C -0.15 -3.46 5.88 -19.84 -0.12 -3.58 16 3 C -0.06 -1.48 9.69 22.25 0.22 -1.27 16 4 C -0.20 -6.03 8.85 22.39 0.20 -5.83 16 5 C 0.22 7.44 6.64 38.21 0.25 7.69 16 6 N -0.72 -27.88 4.92 -318.85 -1.57 -29.45 16 7 C 0.16 6.21 2.21 44.99 0.10 6.30 16 8 H 0.07 2.69 6.49 -2.38 -0.02 2.67 16 9 C -0.15 -5.01 9.43 71.98 0.68 -4.33 16 10 C 0.02 1.11 4.52 29.85 0.13 1.24 16 11 C -0.52 -29.08 8.84 25.60 0.23 -28.85 16 12 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 13 C 0.01 0.38 5.46 84.66 0.46 0.85 16 14 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 15 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.14 -4.41 6.34 22.44 0.14 -4.27 16 20 Cl -0.09 -2.85 27.60 -2.72 -0.08 -2.92 16 21 C -0.07 -1.73 9.48 22.27 0.21 -1.52 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 0.95 8.08 -2.38 -0.02 0.93 16 24 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 26 H 0.13 3.78 6.12 -2.91 -0.02 3.77 16 27 H 0.39 16.32 7.28 -92.70 -0.67 15.64 16 28 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.06 1.86 7.72 -2.39 -0.02 1.84 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -61.76 300.64 4.30 -57.45 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.42 Total: 17.68 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.22 Total: -34.34 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.28 Total: -84.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.08 Total: -2.92 kcal Total: -61.76 4.30 -57.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.466 kcal (2) G-P(sol) polarization free energy of solvation -61.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds