Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38134 * 120.02904 * 2 1 4 4 C 1.38235 * 120.08891 * 180.23591 * 3 2 1 5 5 C 1.38428 * 120.13437 * 359.48414 * 4 3 2 6 6 Cl 1.73607 * 119.97532 * 180.23745 * 5 4 3 7 7 C 1.38191 * 120.05112 * 0.25898 * 5 4 3 8 8 C 1.38904 * 120.01932 * 179.72496 * 2 1 3 9 9 N 1.39666 * 120.07015 * 0.03753 * 8 2 1 10 10 C 1.46502 * 120.00176 * 179.97438 * 9 8 2 11 11 H 1.09005 * 109.47173 * 325.01040 * 10 9 8 12 12 C 1.53008 * 109.46510 * 85.00494 * 10 9 8 13 13 C 1.52995 * 109.47620 * 205.00428 * 10 9 8 14 14 C 1.50703 * 109.46984 * 65.00308 * 13 10 9 15 15 H 1.07999 * 119.99982 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00104 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99712 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00151 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47519 * 89.99693 * 18 16 14 20 20 H 1.48501 * 109.47156 * 210.00176 * 18 16 14 21 21 H 1.48504 * 109.47145 * 329.99509 * 18 16 14 22 22 H 1.09004 * 109.47178 * 270.27750 * 1 2 3 23 23 H 1.09000 * 109.47020 * 30.27475 * 1 2 3 24 24 H 1.08995 * 109.47389 * 150.27806 * 1 2 3 25 25 H 1.07996 * 119.95159 * 359.97200 * 3 2 1 26 26 H 1.08002 * 119.93474 * 179.76945 * 4 3 2 27 27 H 1.08004 * 120.04404 * 180.02562 * 7 5 4 28 28 H 0.97000 * 120.00444 * 359.97438 * 9 8 2 29 29 H 1.08993 * 109.47296 * 60.00173 * 12 10 9 30 30 H 1.09001 * 109.46512 * 180.02562 * 12 10 9 31 31 H 1.09004 * 109.47202 * 300.00198 * 12 10 9 32 32 H 1.09003 * 109.47272 * 185.00161 * 13 10 9 33 33 H 1.08997 * 109.47317 * 305.00207 * 13 10 9 34 34 H 0.97003 * 120.00106 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5806 1.1974 -0.0049 5 6 4.2768 0.0009 0.0009 6 17 6.0129 0.0076 0.0009 7 6 3.5911 -1.1988 0.0063 8 6 2.2019 -1.2027 0.0058 9 7 1.5055 -2.4133 0.0108 10 6 2.2399 -3.6809 0.0163 11 1 3.1507 -3.5757 -0.5733 12 6 2.6040 -4.0530 1.4551 13 6 1.3647 -4.7802 -0.5889 14 6 1.1078 -4.4748 -2.0421 15 1 1.5265 -3.5853 -2.4891 16 6 0.3373 -5.3303 -2.8006 17 7 -0.1730 -6.4131 -2.2561 18 14 0.0194 -4.9520 -4.6020 19 1 1.0827 -5.5716 -5.4331 20 1 -1.3019 -5.5023 -4.9977 21 1 0.0246 -3.4813 -4.8074 22 1 -0.3634 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5095 25 1 1.6580 2.1310 -0.0005 26 1 4.1186 2.1339 -0.0087 27 1 4.1344 -2.1322 0.0112 28 1 0.5355 -2.4149 0.0106 29 1 1.6933 -4.1582 2.0447 30 1 3.1508 -4.9959 1.4592 31 1 3.2276 -3.2698 1.8863 32 1 1.8755 -5.7394 -0.5040 33 1 0.4161 -4.8252 -0.0538 34 1 -0.7148 -7.0153 -2.7898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829173627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -2.736398 kcal Electronic energy + Delta-G solvation = -16334.951671 eV Core-core repulsion = 13678.543022 eV Total energy + Delta-G solvation = -2656.408650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48921 -36.65753 -35.93333 -33.02898 -32.34635 -31.06451 -28.25806 -27.47194 -26.29866 -23.37025 -22.30587 -20.96031 -19.69727 -17.30340 -16.37505 -15.90441 -15.11973 -14.60261 -14.35321 -14.01344 -13.71995 -13.35563 -12.88862 -12.69629 -12.53035 -12.28612 -11.88811 -11.63343 -11.44720 -11.22420 -11.14923 -10.96775 -10.79035 -10.72406 -10.56460 -10.31471 -9.69626 -9.43112 -9.13052 -8.46804 -8.37505 -6.90389 -6.09474 -4.12016 1.49247 1.85105 2.36873 3.26989 3.33926 3.37827 4.00801 4.03392 4.39382 5.03257 5.23366 5.27384 5.35390 5.54683 5.69066 5.78573 5.83069 5.86745 5.94288 5.96413 6.11661 6.24840 6.37122 6.46252 6.59120 6.60044 6.74099 6.77691 7.02977 7.42723 7.49316 7.87416 7.94974 8.28488 8.32480 8.94382 9.53169 11.01374 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.005863 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.675688 B = 4774.732606 C = 4948.840844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.172 4.172 3 C -0.061 4.061 4 C -0.189 4.189 5 C 0.015 3.985 6 Cl -0.088 7.088 7 C -0.197 4.197 8 C 0.249 3.751 9 N -0.709 5.709 10 C 0.144 3.856 11 H 0.069 0.931 12 C -0.165 4.165 13 C 0.016 3.984 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.403 0.597 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.021 0.979 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 12.355 6.251 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.177 4.177 3 C -0.080 4.080 4 C -0.210 4.210 5 C -0.013 4.013 6 Cl -0.059 7.059 7 C -0.221 4.221 8 C 0.140 3.860 9 N -0.334 5.334 10 C 0.039 3.961 11 H 0.087 0.913 12 C -0.223 4.223 13 C -0.021 4.021 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.240 0.760 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.035 11.954 6.208 14.380 hybrid contribution -0.365 0.044 -1.096 1.156 sum 4.669 11.998 5.112 13.852 Atomic orbital electron populations 1.20591 0.91253 1.02722 1.01673 1.19431 0.96025 0.91711 1.10565 1.20594 0.92991 0.96856 0.97540 1.20562 0.94019 0.96142 1.10279 1.20537 0.83125 0.94785 1.02810 1.98335 1.11583 1.98998 1.96984 1.20476 0.92539 0.97288 1.11756 1.17594 0.90553 0.86585 0.91311 1.45125 1.08601 1.02133 1.77533 1.21278 0.96402 0.84252 0.94174 0.91345 1.22291 1.01115 1.00789 0.98130 1.19391 0.94571 0.92477 0.95705 1.21172 1.31412 1.08074 0.94957 0.92456 1.24997 0.95797 0.95058 0.98431 1.69953 1.34480 1.12609 1.36329 0.86613 0.77560 0.78614 0.85375 1.20643 1.21250 1.19869 0.91876 0.91820 0.91465 0.85917 0.86104 0.85001 0.76023 0.92877 0.92139 0.93601 0.95008 0.96067 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.57 36.01 0.34 -1.01 16 2 C -0.17 -2.56 5.90 -104.41 -0.62 -3.18 16 3 C -0.06 -0.81 9.69 -39.62 -0.38 -1.19 16 4 C -0.19 -2.59 9.83 -39.51 -0.39 -2.98 16 5 C 0.01 0.22 6.32 -39.53 -0.25 -0.03 16 6 Cl -0.09 -1.21 28.95 -51.86 -1.50 -2.71 16 7 C -0.20 -3.25 8.63 -39.35 -0.34 -3.59 16 8 C 0.25 4.18 6.62 -83.79 -0.55 3.63 16 9 N -0.71 -12.71 4.86 -52.17 -0.25 -12.96 16 10 C 0.14 2.75 2.21 -67.93 -0.15 2.60 16 11 H 0.07 1.36 6.49 -51.93 -0.34 1.03 16 12 C -0.16 -2.71 9.43 37.16 0.35 -2.36 16 13 C 0.02 0.38 4.52 -27.88 -0.13 0.25 16 14 C -0.52 -13.80 8.84 -34.44 -0.30 -14.11 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.07 0.94 6.54 -51.93 -0.34 0.60 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 26 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 27 H 0.13 2.20 6.12 -52.48 -0.32 1.88 16 28 H 0.40 7.18 6.60 -40.82 -0.27 6.91 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -27.94 299.38 -8.63 -36.57 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.59 Total: 3.83 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.51 Total: -20.44 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.48 Total: -38.05 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.71 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.94 -8.63 -36.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.834 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds