Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38134 * 120.02904 * 2 1 4 4 C 1.38235 * 120.08891 * 180.23591 * 3 2 1 5 5 C 1.38428 * 120.13437 * 359.48414 * 4 3 2 6 6 Cl 1.73607 * 119.97532 * 180.23745 * 5 4 3 7 7 C 1.38191 * 120.05112 * 0.25898 * 5 4 3 8 8 C 1.38904 * 120.01932 * 179.72496 * 2 1 3 9 9 N 1.39666 * 120.07015 * 0.03753 * 8 2 1 10 10 C 1.46502 * 120.00176 * 179.97438 * 9 8 2 11 11 H 1.09005 * 109.47173 * 325.01040 * 10 9 8 12 12 C 1.53008 * 109.46510 * 85.00494 * 10 9 8 13 13 C 1.52995 * 109.47620 * 205.00428 * 10 9 8 14 14 C 1.50703 * 109.46984 * 65.00308 * 13 10 9 15 15 H 1.07999 * 119.99982 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00104 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99712 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00151 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47519 * 89.99693 * 18 16 14 20 20 H 1.48501 * 109.47156 * 210.00176 * 18 16 14 21 21 H 1.48504 * 109.47145 * 329.99509 * 18 16 14 22 22 H 1.09004 * 109.47178 * 270.27750 * 1 2 3 23 23 H 1.09000 * 109.47020 * 30.27475 * 1 2 3 24 24 H 1.08995 * 109.47389 * 150.27806 * 1 2 3 25 25 H 1.07996 * 119.95159 * 359.97200 * 3 2 1 26 26 H 1.08002 * 119.93474 * 179.76945 * 4 3 2 27 27 H 1.08004 * 120.04404 * 180.02562 * 7 5 4 28 28 H 0.97000 * 120.00444 * 359.97438 * 9 8 2 29 29 H 1.08993 * 109.47296 * 60.00173 * 12 10 9 30 30 H 1.09001 * 109.46512 * 180.02562 * 12 10 9 31 31 H 1.09004 * 109.47202 * 300.00198 * 12 10 9 32 32 H 1.09003 * 109.47272 * 185.00161 * 13 10 9 33 33 H 1.08997 * 109.47317 * 305.00207 * 13 10 9 34 34 H 0.97003 * 120.00106 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5806 1.1974 -0.0049 5 6 4.2768 0.0009 0.0009 6 17 6.0129 0.0076 0.0009 7 6 3.5911 -1.1988 0.0063 8 6 2.2019 -1.2027 0.0058 9 7 1.5055 -2.4133 0.0108 10 6 2.2399 -3.6809 0.0163 11 1 3.1507 -3.5757 -0.5733 12 6 2.6040 -4.0530 1.4551 13 6 1.3647 -4.7802 -0.5889 14 6 1.1078 -4.4748 -2.0421 15 1 1.5265 -3.5853 -2.4891 16 6 0.3373 -5.3303 -2.8006 17 7 -0.1730 -6.4131 -2.2561 18 14 0.0194 -4.9520 -4.6020 19 1 1.0827 -5.5716 -5.4331 20 1 -1.3019 -5.5023 -4.9977 21 1 0.0246 -3.4813 -4.8074 22 1 -0.3634 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5095 25 1 1.6580 2.1310 -0.0005 26 1 4.1186 2.1339 -0.0087 27 1 4.1344 -2.1322 0.0112 28 1 0.5355 -2.4149 0.0106 29 1 1.6933 -4.1582 2.0447 30 1 3.1508 -4.9959 1.4592 31 1 3.2276 -3.2698 1.8863 32 1 1.8755 -5.7394 -0.5040 33 1 0.4161 -4.8252 -0.0538 34 1 -0.7148 -7.0153 -2.7898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829173627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = -16.684126 kcal Electronic energy + Delta-G solvation = -16335.556490 eV Core-core repulsion = 13678.543022 eV Total energy + Delta-G solvation = -2657.013469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68905 -37.95998 -37.20420 -34.89470 -33.60421 -32.48416 -29.50539 -29.28804 -27.41228 -25.19303 -23.66351 -22.12487 -21.17924 -18.63757 -18.37613 -17.24087 -16.50399 -16.29856 -15.63400 -15.26802 -15.00061 -14.68715 -14.32576 -14.05496 -13.69234 -13.57747 -13.46445 -13.26871 -13.08630 -12.66037 -12.59637 -12.36208 -12.24920 -12.14365 -11.98139 -11.69231 -11.34320 -11.25944 -10.74611 -10.58690 -9.51070 -8.22707 -8.16898 -6.29571 0.34333 0.69542 1.23948 1.37229 1.38570 1.48694 2.38853 2.67006 2.85702 3.14084 3.94104 4.13411 4.17124 4.30625 4.44512 4.47267 4.54696 4.68450 4.80069 4.86783 4.91219 4.95665 5.07437 5.21963 5.24899 5.33549 5.42955 5.47088 5.53212 5.65612 5.79238 5.94144 6.21725 6.54941 6.84383 6.95642 7.39179 8.89930 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.005863 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.675688 B = 4774.732606 C = 4948.840844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.177 4.177 3 C -0.057 4.057 4 C -0.182 4.182 5 C 0.003 3.997 6 Cl -0.079 7.079 7 C -0.212 4.212 8 C 0.225 3.775 9 N -0.718 5.718 10 C 0.157 3.843 11 H 0.058 0.942 12 C -0.154 4.154 13 C 0.023 3.977 14 C -0.524 4.524 15 H 0.052 0.948 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.269 1.269 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.158 0.842 26 H 0.145 0.855 27 H 0.122 0.878 28 H 0.400 0.600 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.009 0.991 33 H 0.003 0.997 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 14.668 6.076 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C -0.075 4.075 4 C -0.203 4.203 5 C -0.025 4.025 6 Cl -0.051 7.051 7 C -0.236 4.236 8 C 0.118 3.882 9 N -0.344 5.344 10 C 0.052 3.948 11 H 0.076 0.924 12 C -0.213 4.213 13 C -0.015 4.015 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.175 0.825 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.237 0.763 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.198 14.299 6.038 16.369 hybrid contribution -0.359 -0.590 -1.022 1.233 sum 4.838 13.709 5.016 15.379 Atomic orbital electron populations 1.20617 0.89983 1.02836 1.02601 1.19767 0.97152 0.91541 1.09703 1.20994 0.92986 0.97586 0.95966 1.20936 0.94457 0.96503 1.08376 1.20692 0.83768 0.94905 1.03088 1.98335 1.10787 1.98986 1.96948 1.20502 0.92666 0.97616 1.12831 1.17810 0.90828 0.86711 0.92818 1.44928 1.08330 1.02082 1.79088 1.20916 0.94856 0.83719 0.95324 0.92368 1.22172 1.01425 1.01422 0.96253 1.19239 0.94293 0.93216 0.94726 1.21453 1.30847 1.07598 0.96338 0.92983 1.25784 0.95791 0.94975 1.02575 1.70062 1.35385 1.13593 1.37888 0.85623 0.77511 0.78524 0.80447 1.20248 1.20731 1.19354 0.90548 0.89704 0.93250 0.82462 0.83696 0.86054 0.76302 0.92746 0.91659 0.92238 0.97286 0.97858 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 9.57 71.24 0.68 -1.77 16 2 C -0.18 -4.90 5.90 -19.73 -0.12 -5.02 16 3 C -0.06 -1.32 9.69 22.24 0.22 -1.10 16 4 C -0.18 -4.44 9.83 22.31 0.22 -4.22 16 5 C 0.00 0.07 6.32 22.30 0.14 0.22 16 6 Cl -0.08 -2.06 28.95 -2.72 -0.08 -2.14 16 7 C -0.21 -6.89 8.63 22.42 0.19 -6.70 16 8 C 0.23 7.43 6.62 38.21 0.25 7.69 16 9 N -0.72 -25.96 4.86 -318.95 -1.55 -27.51 16 10 C 0.16 6.16 2.21 44.99 0.10 6.26 16 11 H 0.06 2.38 6.49 -2.38 -0.02 2.37 16 12 C -0.15 -5.07 9.43 71.98 0.68 -4.39 16 13 C 0.02 1.12 4.52 29.85 0.13 1.25 16 14 C -0.52 -28.48 8.84 25.60 0.23 -28.25 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.38 5.46 84.65 0.46 0.84 16 17 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 18 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 24 H 0.05 1.35 6.54 -2.39 -0.02 1.33 16 25 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 26 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 27 H 0.12 4.09 6.12 -2.91 -0.02 4.07 16 28 H 0.40 14.55 6.60 -92.71 -0.61 13.93 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.79 7.71 -2.38 -0.02 1.77 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -59.68 299.38 4.36 -55.33 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.49 Total: 17.87 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.19 Total: -35.18 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.27 Total: -81.80 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -59.68 4.36 -55.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829173627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.641 kcal (2) G-P(sol) polarization free energy of solvation -59.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds