Wall clock time and date at job start Mon Mar 30 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48493 * 109.46778 * 268.85530 * 3 2 1 5 5 H 1.48494 * 109.47150 * 28.85651 * 3 2 1 6 6 H 1.48503 * 109.46534 * 148.85669 * 3 2 1 7 7 C 1.38793 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99738 * 1.76142 * 7 2 1 9 9 N 1.36844 * 120.00370 * 182.04054 * 7 2 1 10 10 C 1.39293 * 120.00213 * 192.97010 * 9 7 2 11 11 C 1.39106 * 120.09102 * 6.14397 * 10 9 7 12 12 C 1.38023 * 119.91219 * 179.97438 * 11 10 9 13 13 C 1.38354 * 120.09017 * 0.02562 * 12 11 10 14 14 C 1.38307 * 120.17982 * 359.97438 * 13 12 11 15 15 C 1.38074 * 120.09096 * 359.73654 * 14 13 12 16 16 C 1.50699 * 120.04900 * 180.28315 * 15 14 13 17 17 C 1.50697 * 109.46997 * 267.31845 * 16 15 14 18 18 C 1.38232 * 120.00065 * 269.31136 * 17 16 15 19 19 C 1.38241 * 119.99802 * 179.76835 * 18 17 16 20 20 C 1.38236 * 120.00100 * 0.48545 * 19 18 17 21 21 C 1.38238 * 119.99713 * 359.78970 * 20 19 18 22 22 C 1.38233 * 120.00082 * 359.95487 * 21 20 19 23 23 H 0.96999 * 120.00212 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99868 * 12.96561 * 9 7 2 25 25 H 1.07997 * 120.03983 * 359.95273 * 11 10 9 26 26 H 1.08004 * 119.95776 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.91275 * 179.97438 * 13 12 11 28 28 H 1.08003 * 119.95618 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.46929 * 27.31955 * 16 15 14 30 30 H 1.08998 * 109.46949 * 147.31720 * 16 15 14 31 31 H 1.08000 * 120.00373 * 359.97438 * 18 17 16 32 32 H 1.07995 * 119.99793 * 180.25343 * 19 18 17 33 33 H 1.07996 * 120.00175 * 179.77260 * 20 19 18 34 34 H 1.08000 * 119.99824 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.99756 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.5216 2.0324 -1.3998 5 1 1.4355 2.6595 0.6757 6 1 3.5352 1.4472 0.7241 7 6 2.0100 -1.2020 0.0005 8 1 1.4703 -2.1371 -0.0278 9 7 3.3777 -1.2024 0.0427 10 6 4.0825 -2.3732 -0.2268 11 6 3.4078 -3.5088 -0.6629 12 6 4.1099 -4.6668 -0.9294 13 6 5.4829 -4.6994 -0.7627 14 6 6.1577 -3.5726 -0.3293 15 6 5.4635 -2.4084 -0.0662 16 6 6.2004 -1.1793 0.3999 17 6 6.2157 -1.1440 1.9064 18 6 5.2042 -0.4988 2.5930 19 6 5.2157 -0.4706 3.9751 20 6 6.2441 -1.0789 4.6703 21 6 7.2587 -1.7192 3.9835 22 6 7.2443 -1.7520 2.6016 23 1 -0.4850 0.8400 0.0004 24 1 3.8565 -0.3873 0.2603 25 1 2.3359 -3.4843 -0.7926 26 1 3.5866 -5.5490 -1.2677 27 1 6.0294 -5.6072 -0.9717 28 1 7.2296 -3.6019 -0.2008 29 1 7.2241 -1.2061 0.0267 30 1 5.6986 -0.2891 0.0207 31 1 4.4031 -0.0197 2.0498 32 1 4.4233 0.0300 4.5115 33 1 6.2551 -1.0537 5.7499 34 1 8.0623 -2.1941 4.5266 35 1 8.0372 -2.2519 2.0651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020048550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:30 Heat of formation + Delta-G solvation = 49.006794 kcal Electronic energy + Delta-G solvation = -17940.642652 eV Core-core repulsion = 15288.910605 eV Total energy + Delta-G solvation = -2651.732047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.44071 -38.21172 -35.07318 -33.34309 -31.99578 -30.59194 -29.76218 -28.43026 -25.84504 -24.35047 -22.32718 -21.69528 -20.78491 -20.00925 -18.13914 -16.63823 -16.31660 -15.27687 -14.99051 -14.77315 -14.56046 -13.75787 -13.47130 -13.26782 -13.19884 -12.93423 -12.59700 -12.26331 -11.98517 -11.96167 -11.66088 -11.35670 -10.92592 -10.80983 -10.64663 -10.39514 -10.27049 -10.11757 -9.77576 -8.80007 -8.63036 -8.39464 -7.89624 -6.79962 -6.45214 -3.77311 1.63966 1.69222 2.33846 2.53794 2.96441 3.04459 3.09362 4.00418 4.08463 4.62849 4.86899 5.09639 5.11307 5.21743 5.29396 5.44049 5.52503 5.65882 5.75743 5.82032 5.93767 5.95672 6.10933 6.25970 6.31587 6.35890 6.59618 6.72391 6.77948 6.81585 6.93246 6.95939 7.27821 7.31376 7.41976 7.50486 7.66652 7.80692 8.08780 8.60295 9.26905 9.33390 10.66922 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.009842 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.522400 B = 2844.238826 C = 4196.478605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.040 3.960 3 Si 0.876 3.124 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.115 0.885 9 N -0.596 5.596 10 C 0.225 3.775 11 C -0.207 4.207 12 C -0.068 4.068 13 C -0.236 4.236 14 C -0.056 4.056 15 C -0.203 4.203 16 C -0.028 4.028 17 C -0.064 4.064 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.116 4.116 23 H 0.275 0.725 24 H 0.376 0.624 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 -1.499 4.196 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.164 4.164 3 Si 0.703 3.297 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.429 4.429 8 H 0.132 0.868 9 N -0.205 5.205 10 C 0.108 3.892 11 C -0.231 4.231 12 C -0.087 4.087 13 C -0.258 4.258 14 C -0.075 4.075 15 C -0.210 4.210 16 C -0.066 4.066 17 C -0.064 4.064 18 C -0.132 4.132 19 C -0.135 4.135 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.134 4.134 23 H 0.085 0.915 24 H 0.212 0.788 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.801 -1.233 4.210 12.590 hybrid contribution 0.310 1.164 0.162 1.215 sum 12.110 -0.069 4.372 12.875 Atomic orbital electron populations 1.69682 1.05483 1.27717 1.48910 1.25016 0.95509 0.98078 0.97775 0.86729 0.79619 0.84070 0.79242 1.19396 1.20031 1.19564 1.19384 0.79596 0.96282 1.47680 0.86750 1.41345 1.05974 1.07935 1.65243 1.17577 0.89691 0.87890 0.94069 1.20585 0.99998 0.92821 1.09654 1.20690 0.93998 0.96535 0.97520 1.20381 0.94452 0.98208 1.12749 1.20373 0.97705 0.92125 0.97332 1.18769 0.92039 0.95952 1.14215 1.19294 1.00231 0.96635 0.90404 1.19967 0.94324 0.96312 0.95817 1.21254 0.98030 0.99408 0.94505 1.21120 0.98305 0.99724 0.94323 1.21038 0.95201 0.99454 0.99391 1.21038 0.98769 1.00018 0.94330 1.20941 0.98587 0.99856 0.94035 0.91497 0.78790 0.86129 0.87894 0.88302 0.88066 0.90715 0.91833 0.86144 0.86369 0.86636 0.86577 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 13.97 55.49 0.77 -23.97 16 2 C 0.04 1.05 5.50 -17.45 -0.10 0.96 16 3 Si 0.88 19.57 27.88 -169.99 -4.74 14.83 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.58 5.52 56.52 0.31 -5.26 16 7 C -0.30 -7.91 9.89 -15.11 -0.15 -8.06 16 8 H 0.11 3.22 6.22 -52.48 -0.33 2.89 16 9 N -0.60 -13.91 4.85 -9.60 -0.05 -13.96 16 10 C 0.23 4.96 6.59 -83.84 -0.55 4.41 16 11 C -0.21 -4.49 9.26 -39.34 -0.36 -4.85 16 12 C -0.07 -1.29 10.04 -39.62 -0.40 -1.69 16 13 C -0.24 -4.18 10.04 -39.51 -0.40 -4.58 16 14 C -0.06 -0.99 9.68 -39.62 -0.38 -1.38 16 15 C -0.20 -3.92 5.14 -104.38 -0.54 -4.45 16 16 C -0.03 -0.48 5.05 -29.04 -0.15 -0.63 16 17 C -0.06 -1.08 5.12 -104.63 -0.54 -1.62 16 18 C -0.11 -2.04 9.53 -39.58 -0.38 -2.42 16 19 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 20 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 21 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 22 C -0.12 -1.71 9.70 -39.58 -0.38 -2.10 16 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.38 8.30 2.09 -40.82 -0.09 8.21 16 25 H 0.12 2.74 6.15 -52.49 -0.32 2.42 16 26 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 31 H 0.12 2.35 5.35 -52.49 -0.28 2.07 16 32 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -27.81 291.21 -9.09 -36.90 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -3.96 Total: 14.79 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -5.51 Total: -32.98 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.73 Total: -37.93 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.74 Total: 14.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.81 -9.09 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020048550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.908 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds