Wall clock time and date at job start Mon Mar 30 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48493 * 109.46778 * 268.85530 * 3 2 1 5 5 H 1.48494 * 109.47150 * 28.85651 * 3 2 1 6 6 H 1.48503 * 109.46534 * 148.85669 * 3 2 1 7 7 C 1.38793 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99738 * 1.76142 * 7 2 1 9 9 N 1.36844 * 120.00370 * 182.04054 * 7 2 1 10 10 C 1.39293 * 120.00213 * 192.97010 * 9 7 2 11 11 C 1.39106 * 120.09102 * 6.14397 * 10 9 7 12 12 C 1.38023 * 119.91219 * 179.97438 * 11 10 9 13 13 C 1.38354 * 120.09017 * 0.02562 * 12 11 10 14 14 C 1.38307 * 120.17982 * 359.97438 * 13 12 11 15 15 C 1.38074 * 120.09096 * 359.73654 * 14 13 12 16 16 C 1.50699 * 120.04900 * 180.28315 * 15 14 13 17 17 C 1.50697 * 109.46997 * 267.31845 * 16 15 14 18 18 C 1.38232 * 120.00065 * 269.31136 * 17 16 15 19 19 C 1.38241 * 119.99802 * 179.76835 * 18 17 16 20 20 C 1.38236 * 120.00100 * 0.48545 * 19 18 17 21 21 C 1.38238 * 119.99713 * 359.78970 * 20 19 18 22 22 C 1.38233 * 120.00082 * 359.95487 * 21 20 19 23 23 H 0.96999 * 120.00212 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99868 * 12.96561 * 9 7 2 25 25 H 1.07997 * 120.03983 * 359.95273 * 11 10 9 26 26 H 1.08004 * 119.95776 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.91275 * 179.97438 * 13 12 11 28 28 H 1.08003 * 119.95618 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.46929 * 27.31955 * 16 15 14 30 30 H 1.08998 * 109.46949 * 147.31720 * 16 15 14 31 31 H 1.08000 * 120.00373 * 359.97438 * 18 17 16 32 32 H 1.07995 * 119.99793 * 180.25343 * 19 18 17 33 33 H 1.07996 * 120.00175 * 179.77260 * 20 19 18 34 34 H 1.08000 * 119.99824 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.99756 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.5216 2.0324 -1.3998 5 1 1.4355 2.6595 0.6757 6 1 3.5352 1.4472 0.7241 7 6 2.0100 -1.2020 0.0005 8 1 1.4703 -2.1371 -0.0278 9 7 3.3777 -1.2024 0.0427 10 6 4.0825 -2.3732 -0.2268 11 6 3.4078 -3.5088 -0.6629 12 6 4.1099 -4.6668 -0.9294 13 6 5.4829 -4.6994 -0.7627 14 6 6.1577 -3.5726 -0.3293 15 6 5.4635 -2.4084 -0.0662 16 6 6.2004 -1.1793 0.3999 17 6 6.2157 -1.1440 1.9064 18 6 5.2042 -0.4988 2.5930 19 6 5.2157 -0.4706 3.9751 20 6 6.2441 -1.0789 4.6703 21 6 7.2587 -1.7192 3.9835 22 6 7.2443 -1.7520 2.6016 23 1 -0.4850 0.8400 0.0004 24 1 3.8565 -0.3873 0.2603 25 1 2.3359 -3.4843 -0.7926 26 1 3.5866 -5.5490 -1.2677 27 1 6.0294 -5.6072 -0.9717 28 1 7.2296 -3.6019 -0.2008 29 1 7.2241 -1.2061 0.0267 30 1 5.6986 -0.2891 0.0207 31 1 4.4031 -0.0197 2.0498 32 1 4.4233 0.0300 4.5115 33 1 6.2551 -1.0537 5.7499 34 1 8.0623 -2.1941 4.5266 35 1 8.0372 -2.2519 2.0651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020048550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:29 Heat of formation + Delta-G solvation = 35.754262 kcal Electronic energy + Delta-G solvation = -17941.217325 eV Core-core repulsion = 15288.910605 eV Total energy + Delta-G solvation = -2652.306720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82748 -39.56364 -36.79718 -34.70511 -33.86238 -31.73035 -31.13005 -30.07517 -27.22576 -26.17086 -23.54367 -23.02999 -22.35335 -21.42406 -19.94862 -18.19802 -17.57119 -16.92030 -16.48088 -16.06092 -15.87571 -15.34677 -15.12124 -14.72629 -14.59310 -14.19681 -14.06442 -13.91188 -13.62453 -13.27335 -13.05216 -12.95246 -12.52855 -12.21788 -12.05164 -11.85447 -11.79089 -11.68423 -11.48529 -10.69474 -9.78209 -9.62039 -9.37538 -8.51564 -8.44058 -5.79293 0.45803 0.53780 0.81784 0.95335 1.17886 1.27421 1.28293 2.13816 2.86968 2.93898 3.17947 3.34551 3.94015 4.05039 4.17796 4.21318 4.24437 4.33993 4.44642 4.49548 4.66872 4.77023 4.84346 4.88065 5.02749 5.09303 5.20242 5.26042 5.34450 5.58392 5.61708 5.65268 5.71502 5.83000 5.86687 6.00338 6.01500 6.17829 6.43993 6.69978 7.40755 7.48302 8.72416 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.009842 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.522400 B = 2844.238826 C = 4196.478605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.299 4.299 8 H 0.077 0.923 9 N -0.613 5.613 10 C 0.201 3.799 11 C -0.238 4.238 12 C -0.074 4.074 13 C -0.217 4.217 14 C -0.057 4.057 15 C -0.196 4.196 16 C -0.028 4.028 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.275 0.725 24 H 0.381 0.619 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.057 -2.723 5.005 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.429 4.429 8 H 0.095 0.905 9 N -0.228 5.228 10 C 0.088 3.912 11 C -0.262 4.262 12 C -0.093 4.093 13 C -0.238 4.238 14 C -0.075 4.075 15 C -0.201 4.201 16 C -0.066 4.066 17 C -0.081 4.081 18 C -0.163 4.163 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.134 4.134 23 H 0.084 0.916 24 H 0.218 0.782 25 H 0.109 0.891 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.163 0.837 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.591 -2.515 5.012 17.513 hybrid contribution -0.942 1.222 -0.076 1.545 sum 15.649 -1.293 4.936 16.460 Atomic orbital electron populations 1.69819 1.07158 1.28494 1.52154 1.25717 0.96233 1.01470 0.97998 0.85746 0.79143 0.79482 0.79460 1.19033 1.19715 1.17504 1.19158 0.81286 0.95066 1.47354 0.90536 1.41062 1.04507 1.08801 1.68426 1.18050 0.91339 0.87405 0.94375 1.20660 0.99149 0.94617 1.11746 1.21006 0.95124 0.96149 0.96991 1.20920 0.93747 0.99647 1.09455 1.20895 0.99876 0.90982 0.95756 1.19183 0.90824 0.97792 1.12349 1.19358 1.01475 0.94833 0.90895 1.20000 0.95083 0.97408 0.95612 1.21242 0.98353 1.01173 0.95545 1.21322 0.99547 1.00603 0.93821 1.21415 0.94313 0.98192 1.00948 1.21501 0.99142 0.98871 0.94182 1.21283 0.98273 0.99076 0.94790 0.91571 0.78217 0.89070 0.85582 0.84448 0.83728 0.87301 0.93265 0.88969 0.85986 0.83759 0.82946 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 13.97 21.65 0.30 -56.00 16 2 C -0.02 -0.91 5.50 84.86 0.47 -0.44 16 3 Si 0.94 42.36 27.88 68.60 1.91 44.27 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.25 -10.34 5.52 99.48 0.55 -9.79 16 7 C -0.30 -16.96 9.89 84.04 0.83 -16.13 16 8 H 0.08 4.78 6.22 -2.91 -0.02 4.76 16 9 N -0.61 -30.04 4.85 -184.28 -0.89 -30.93 16 10 C 0.20 9.02 6.59 38.36 0.25 9.28 16 11 C -0.24 -10.66 9.26 22.43 0.21 -10.45 16 12 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16 13 C -0.22 -6.69 10.04 22.31 0.22 -6.46 16 14 C -0.06 -1.73 9.68 22.25 0.22 -1.51 16 15 C -0.20 -7.12 5.14 -19.70 -0.10 -7.22 16 16 C -0.03 -0.90 5.05 29.10 0.15 -0.75 16 17 C -0.08 -2.56 5.12 -19.87 -0.10 -2.66 16 18 C -0.14 -5.18 9.53 22.27 0.21 -4.97 16 19 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 20 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 21 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 22 C -0.12 -2.92 9.70 22.27 0.22 -2.71 16 23 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.38 17.44 2.09 -92.71 -0.19 17.24 16 25 H 0.09 4.54 6.15 -2.91 -0.02 4.53 16 26 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 29 H 0.11 2.63 8.01 -2.39 -0.02 2.61 16 30 H 0.05 1.69 6.57 -2.39 -0.02 1.67 16 31 H 0.09 3.75 5.35 -2.91 -0.02 3.74 16 32 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -65.45 291.21 5.53 -59.92 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.75 Total: 38.64 kcal Atomic # 6 Polarization: -59.37 SS G_CDS: 3.46 Total: -55.91 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -0.59 Total: -86.93 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.91 Total: 44.27 kcal Total: -65.45 5.53 -59.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020048550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.675 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds