Wall clock time and date at job start Mon Mar 30 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48496 * 109.46941 * 264.62899 * 3 2 1 5 5 H 1.48492 * 109.47133 * 24.63179 * 3 2 1 6 6 H 1.48500 * 109.46626 * 144.63164 * 3 2 1 7 7 C 1.37879 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 4.98240 * 7 2 1 9 9 C 1.50697 * 119.99432 * 184.98937 * 7 2 1 10 10 H 1.08999 * 109.47793 * 25.08381 * 9 7 2 11 11 N 1.46504 * 109.47306 * 145.08400 * 9 7 2 12 12 C 1.39670 * 120.00113 * 275.00160 * 11 9 7 13 13 C 1.38907 * 120.07354 * 179.97438 * 12 11 9 14 14 C 1.38105 * 119.92201 * 179.72528 * 13 12 11 15 15 C 1.38281 * 120.07682 * 0.27159 * 14 13 12 16 16 C 1.38284 * 120.14825 * 359.97438 * 15 14 13 17 17 C 1.38098 * 120.07610 * 0.02562 * 16 15 14 18 18 C 1.50701 * 109.47308 * 265.08237 * 9 7 2 19 19 C 1.38234 * 120.00081 * 285.21191 * 18 9 7 20 20 C 1.38234 * 119.99973 * 179.78430 * 19 18 9 21 21 C 1.38235 * 120.00036 * 0.43405 * 20 19 18 22 22 C 1.38234 * 120.00073 * 359.82009 * 21 20 19 23 23 C 1.38232 * 120.00196 * 105.47660 * 18 9 7 24 24 H 0.96998 * 120.00209 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99626 * 94.99436 * 11 9 7 26 26 H 1.08001 * 120.04117 * 359.97438 * 13 12 11 27 27 H 1.08003 * 119.95802 * 180.29827 * 14 13 12 28 28 H 1.08001 * 119.92674 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.95850 * 180.02562 * 16 15 14 30 30 H 1.08003 * 120.04145 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.99802 * 359.97438 * 19 18 9 32 32 H 1.08004 * 119.99890 * 180.27227 * 20 19 18 33 33 H 1.08003 * 119.99716 * 179.83259 * 21 20 19 34 34 H 1.08000 * 119.99927 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.99711 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6100 1.9809 -1.3939 5 1 1.3944 2.6827 0.5835 6 1 3.4853 1.4756 0.8104 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1275 -0.0822 9 6 3.5072 -1.1965 0.1130 10 1 3.8352 -0.2865 0.6152 11 7 3.9366 -2.3636 0.8876 12 6 3.9651 -2.3038 2.2827 13 6 4.3714 -3.4096 3.0187 14 6 4.4038 -3.3451 4.3978 15 6 4.0270 -2.1834 5.0464 16 6 3.6171 -1.0825 4.3169 17 6 3.5823 -1.1400 2.9376 18 6 4.1150 -1.2568 -1.2647 19 6 4.1008 -2.4426 -1.9751 20 6 4.6543 -2.4967 -3.2407 21 6 5.2301 -1.3674 -3.7922 22 6 5.2489 -0.1830 -3.0797 23 6 4.6915 -0.1278 -1.8159 24 1 -0.4850 0.8400 0.0004 25 1 4.2010 -3.1778 0.4315 26 1 4.6655 -4.3173 2.5128 27 1 4.7243 -4.2030 4.9704 28 1 4.0536 -2.1356 6.1250 29 1 3.3238 -0.1766 4.8266 30 1 3.2625 -0.2797 2.3684 31 1 3.6545 -3.3259 -1.5426 32 1 4.6393 -3.4221 -3.7975 33 1 5.6649 -1.4105 -4.7798 34 1 5.6991 0.6991 -3.5104 35 1 4.7061 0.7976 -1.2593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032221964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:52 Heat of formation + Delta-G solvation = 55.039309 kcal Electronic energy + Delta-G solvation = -17871.304290 eV Core-core repulsion = 15219.833832 eV Total energy + Delta-G solvation = -2651.470457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.13288 -38.30769 -35.27974 -32.60122 -31.17782 -30.40027 -30.20531 -28.15003 -26.68695 -23.06743 -22.25871 -21.96688 -21.05235 -19.74938 -17.24327 -17.02819 -16.23587 -15.34434 -15.01615 -14.88302 -14.33935 -13.77585 -13.43360 -13.10132 -12.97708 -12.82462 -12.66915 -12.53065 -12.24800 -11.89311 -11.32770 -10.97322 -10.83499 -10.78565 -10.53679 -10.28574 -9.90425 -9.78574 -9.17456 -8.80671 -8.39830 -8.29165 -8.03149 -6.55248 -6.28142 -4.28487 1.91221 1.95459 2.08314 2.32234 3.13033 3.17823 3.23312 4.18955 4.22092 4.49274 4.60289 5.03031 5.37484 5.39104 5.49405 5.53415 5.56236 5.74922 5.80792 6.03224 6.05545 6.10353 6.28172 6.31941 6.42340 6.54725 6.62186 6.67215 6.96788 6.99011 7.07191 7.11763 7.23491 7.27804 7.38140 7.55023 7.57012 8.07288 8.37780 8.60295 8.79203 9.31120 10.83970 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.008652 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.789658 B = 3235.597380 C = 4201.344687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.082 3.918 3 Si 0.858 3.142 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.080 0.920 9 C 0.265 3.735 10 H 0.058 0.942 11 N -0.727 5.727 12 C 0.244 3.756 13 C -0.216 4.216 14 C -0.078 4.078 15 C -0.202 4.202 16 C -0.076 4.076 17 C -0.186 4.186 18 C -0.046 4.046 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.118 4.118 23 C -0.132 4.132 24 H 0.268 0.732 25 H 0.385 0.615 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.061 -2.553 0.465 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.123 4.123 3 Si 0.685 3.315 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.551 4.551 8 H 0.098 0.902 9 C 0.161 3.839 10 H 0.076 0.924 11 N -0.351 5.351 12 C 0.137 3.863 13 C -0.239 4.239 14 C -0.097 4.097 15 C -0.223 4.223 16 C -0.095 4.095 17 C -0.209 4.209 18 C -0.048 4.048 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.164 4.164 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.078 0.922 25 H 0.219 0.781 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.798 -2.239 0.331 10.056 hybrid contribution 0.162 0.656 -0.381 0.776 sum 9.960 -1.583 -0.050 10.085 Atomic orbital electron populations 1.69875 1.06178 1.27351 1.48388 1.24956 0.94718 0.98757 0.93850 0.87236 0.80459 0.84292 0.79533 1.19104 1.20961 1.18382 1.21218 0.88150 0.95123 1.50615 0.90155 1.18233 0.94501 0.86524 0.84595 0.92433 1.45262 1.71601 1.16132 1.02098 1.17821 0.91134 0.93225 0.84160 1.20470 1.11412 0.97935 0.94130 1.20664 0.98240 0.97118 0.93644 1.20661 1.08304 0.94575 0.98713 1.20828 0.97367 0.97768 0.93578 1.20819 1.07195 0.98536 0.94355 1.20674 0.92211 0.92889 0.99010 1.20845 0.99804 0.97990 0.94601 1.21037 0.99065 0.98011 0.95667 1.20902 1.02399 0.93474 0.99645 1.20978 1.00218 0.97559 0.94829 1.20953 0.99659 0.98213 0.96217 0.92192 0.78122 0.87185 0.87275 0.87532 0.87107 0.85803 0.86568 0.86876 0.87024 0.86918 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.96 55.43 0.77 -25.12 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.86 20.20 24.64 -169.99 -4.19 16.01 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.26 -5.72 5.92 56.52 0.33 -5.38 16 7 C -0.51 -13.60 8.95 -34.44 -0.31 -13.91 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.26 5.92 1.53 -70.23 -0.11 5.81 16 10 H 0.06 1.34 3.32 -51.93 -0.17 1.17 16 11 N -0.73 -14.62 5.18 -54.42 -0.28 -14.90 16 12 C 0.24 4.88 6.63 -83.79 -0.56 4.32 16 13 C -0.22 -3.76 9.90 -39.38 -0.39 -4.15 16 14 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 15 C -0.20 -3.28 10.04 -39.55 -0.40 -3.67 16 16 C -0.08 -1.37 10.04 -39.62 -0.40 -1.77 16 17 C -0.19 -3.86 9.15 -39.38 -0.36 -4.22 16 18 C -0.05 -0.96 4.86 -104.62 -0.51 -1.46 16 19 C -0.11 -2.10 8.94 -39.58 -0.35 -2.46 16 20 C -0.12 -1.93 10.05 -39.58 -0.40 -2.32 16 21 C -0.15 -2.27 10.05 -39.58 -0.40 -2.67 16 22 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 23 C -0.13 -2.57 8.82 -39.58 -0.35 -2.92 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.38 6.89 7.19 -40.82 -0.29 6.60 16 26 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.12 2.79 5.61 -52.48 -0.29 2.49 16 31 H 0.12 2.04 7.25 -52.49 -0.38 1.66 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 33 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.11 2.12 6.32 -52.48 -0.33 1.79 16 LS Contribution 290.89 15.07 4.38 4.38 Total: -1.00 -29.02 290.89 -8.79 -37.81 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.06 Total: 13.08 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -5.42 Total: -31.27 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.49 Total: -40.02 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.19 Total: 16.01 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.02 -8.79 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032221964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.850 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds