Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48496 * 109.46941 * 264.62899 * 3 2 1 5 5 H 1.48492 * 109.47133 * 24.63179 * 3 2 1 6 6 H 1.48500 * 109.46626 * 144.63164 * 3 2 1 7 7 C 1.37879 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00420 * 4.98240 * 7 2 1 9 9 C 1.50697 * 119.99432 * 184.98937 * 7 2 1 10 10 H 1.08999 * 109.47793 * 25.08381 * 9 7 2 11 11 N 1.46504 * 109.47306 * 145.08400 * 9 7 2 12 12 C 1.39670 * 120.00113 * 275.00160 * 11 9 7 13 13 C 1.38907 * 120.07354 * 179.97438 * 12 11 9 14 14 C 1.38105 * 119.92201 * 179.72528 * 13 12 11 15 15 C 1.38281 * 120.07682 * 0.27159 * 14 13 12 16 16 C 1.38284 * 120.14825 * 359.97438 * 15 14 13 17 17 C 1.38098 * 120.07610 * 0.02562 * 16 15 14 18 18 C 1.50701 * 109.47308 * 265.08237 * 9 7 2 19 19 C 1.38234 * 120.00081 * 285.21191 * 18 9 7 20 20 C 1.38234 * 119.99973 * 179.78430 * 19 18 9 21 21 C 1.38235 * 120.00036 * 0.43405 * 20 19 18 22 22 C 1.38234 * 120.00073 * 359.82009 * 21 20 19 23 23 C 1.38232 * 120.00196 * 105.47660 * 18 9 7 24 24 H 0.96998 * 120.00209 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99626 * 94.99436 * 11 9 7 26 26 H 1.08001 * 120.04117 * 359.97438 * 13 12 11 27 27 H 1.08003 * 119.95802 * 180.29827 * 14 13 12 28 28 H 1.08001 * 119.92674 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.95850 * 180.02562 * 16 15 14 30 30 H 1.08003 * 120.04145 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.99802 * 359.97438 * 19 18 9 32 32 H 1.08004 * 119.99890 * 180.27227 * 20 19 18 33 33 H 1.08003 * 119.99716 * 179.83259 * 21 20 19 34 34 H 1.08000 * 119.99927 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.99711 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6100 1.9809 -1.3939 5 1 1.3944 2.6827 0.5835 6 1 3.4853 1.4756 0.8104 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1275 -0.0822 9 6 3.5072 -1.1965 0.1130 10 1 3.8352 -0.2865 0.6152 11 7 3.9366 -2.3636 0.8876 12 6 3.9651 -2.3038 2.2827 13 6 4.3714 -3.4096 3.0187 14 6 4.4038 -3.3451 4.3978 15 6 4.0270 -2.1834 5.0464 16 6 3.6171 -1.0825 4.3169 17 6 3.5823 -1.1400 2.9376 18 6 4.1150 -1.2568 -1.2647 19 6 4.1008 -2.4426 -1.9751 20 6 4.6543 -2.4967 -3.2407 21 6 5.2301 -1.3674 -3.7922 22 6 5.2489 -0.1830 -3.0797 23 6 4.6915 -0.1278 -1.8159 24 1 -0.4850 0.8400 0.0004 25 1 4.2010 -3.1778 0.4315 26 1 4.6655 -4.3173 2.5128 27 1 4.7243 -4.2030 4.9704 28 1 4.0536 -2.1356 6.1250 29 1 3.3238 -0.1766 4.8266 30 1 3.2625 -0.2797 2.3684 31 1 3.6545 -3.3259 -1.5426 32 1 4.6393 -3.4221 -3.7975 33 1 5.6649 -1.4105 -4.7798 34 1 5.6991 0.6991 -3.5104 35 1 4.7061 0.7976 -1.2593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032221964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = 38.426667 kcal Electronic energy + Delta-G solvation = -17872.024668 eV Core-core repulsion = 15219.833832 eV Total energy + Delta-G solvation = -2652.190836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.59020 -39.68359 -36.82779 -34.55013 -32.70821 -31.74999 -31.59172 -29.62896 -28.44855 -24.79702 -23.63821 -23.34689 -22.44617 -21.30697 -19.19202 -18.52337 -17.66663 -16.87314 -16.59959 -16.33849 -15.86295 -15.21815 -14.90464 -14.78624 -14.51140 -14.25374 -14.13385 -14.10190 -13.69694 -13.41402 -13.05487 -12.68416 -12.34654 -12.17461 -11.95630 -11.88232 -11.65822 -11.47637 -10.87205 -10.74376 -9.75427 -9.69134 -9.48631 -8.39469 -8.08226 -6.42404 0.54689 0.58286 0.67943 0.91785 1.23268 1.25360 1.31992 2.21750 2.69268 3.04443 3.06160 3.18182 4.01805 4.13899 4.17275 4.24604 4.27167 4.33083 4.48246 4.57787 4.72341 4.75650 4.81327 4.87070 5.00569 5.16999 5.22445 5.29448 5.41290 5.61339 5.64787 5.65915 5.74064 5.81690 5.86539 6.05080 6.19955 6.26010 6.58118 6.68317 7.13130 7.22384 8.77231 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.008652 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.789658 B = 3235.597380 C = 4201.344687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.028 3.972 3 Si 0.914 3.086 4 H -0.254 1.254 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.506 4.506 8 H 0.034 0.966 9 C 0.278 3.722 10 H 0.046 0.954 11 N -0.730 5.730 12 C 0.215 3.785 13 C -0.217 4.217 14 C -0.073 4.073 15 C -0.195 4.195 16 C -0.085 4.085 17 C -0.222 4.222 18 C -0.076 4.076 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.135 4.135 22 C -0.119 4.119 23 C -0.154 4.154 24 H 0.267 0.733 25 H 0.394 0.606 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.754 -3.226 0.208 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.172 4.172 3 Si 0.739 3.261 4 H -0.178 1.178 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.173 3.827 10 H 0.064 0.936 11 N -0.356 5.356 12 C 0.109 3.891 13 C -0.240 4.240 14 C -0.091 4.091 15 C -0.215 4.215 16 C -0.104 4.104 17 C -0.245 4.245 18 C -0.077 4.077 19 C -0.147 4.147 20 C -0.134 4.134 21 C -0.153 4.153 22 C -0.137 4.137 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.229 0.771 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.527 -2.935 0.090 12.866 hybrid contribution -0.600 0.699 -0.260 0.957 sum 11.927 -2.236 -0.170 12.136 Atomic orbital electron populations 1.70025 1.07962 1.28095 1.51493 1.25692 0.95314 1.02306 0.93849 0.86321 0.79672 0.79881 0.80267 1.17832 1.21142 1.16816 1.21354 0.90725 0.93095 1.49344 0.94799 1.17867 0.91726 0.86959 0.86137 0.93631 1.45011 1.72289 1.15945 1.02389 1.18149 0.92556 0.94217 0.84157 1.20800 1.10488 0.97662 0.95054 1.21163 0.96536 0.98270 0.93166 1.21099 1.06297 0.93714 1.00434 1.21103 0.97259 0.99430 0.92604 1.20827 1.09655 0.98302 0.95758 1.20526 0.94650 0.94563 0.97977 1.20973 1.00517 0.97291 0.95919 1.21434 0.97585 0.99853 0.94573 1.21409 1.00616 0.92387 1.00900 1.21367 0.99236 0.99409 0.93645 1.21104 1.00848 0.97573 0.97766 0.92340 0.77123 0.85083 0.83298 0.84082 0.85510 0.88799 0.86834 0.83569 0.82960 0.83837 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.03 1.61 5.47 84.66 0.46 2.08 16 3 Si 0.91 43.49 24.64 68.60 1.69 45.18 16 4 H -0.25 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.24 -10.86 5.92 99.48 0.59 -10.27 16 7 C -0.51 -28.54 8.95 25.60 0.23 -28.31 16 8 H 0.03 2.16 8.06 -2.92 -0.02 2.14 16 9 C 0.28 12.94 1.53 43.50 0.07 13.01 16 10 H 0.05 2.23 3.32 -2.39 -0.01 2.22 16 11 N -0.73 -30.48 5.18 -326.09 -1.69 -32.17 16 12 C 0.21 8.76 6.63 38.21 0.25 9.02 16 13 C -0.22 -7.24 9.90 22.40 0.22 -7.02 16 14 C -0.07 -2.09 10.04 22.25 0.22 -1.87 16 15 C -0.20 -5.79 10.04 22.29 0.22 -5.57 16 16 C -0.09 -3.02 10.04 22.25 0.22 -2.79 16 17 C -0.22 -9.52 9.15 22.40 0.20 -9.31 16 18 C -0.08 -3.16 4.86 -19.87 -0.10 -3.26 16 19 C -0.13 -4.71 8.94 22.27 0.20 -4.51 16 20 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 21 C -0.14 -3.66 10.05 22.27 0.22 -3.44 16 22 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 23 C -0.15 -5.90 8.82 22.27 0.20 -5.70 16 24 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.39 14.54 7.19 -92.71 -0.67 13.87 16 26 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 30 H 0.09 4.50 5.61 -2.91 -0.02 4.48 16 31 H 0.11 4.07 7.25 -2.91 -0.02 4.05 16 32 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.10 3.98 6.32 -2.91 -0.02 3.96 16 Total: -1.00 -67.69 290.89 3.69 -63.99 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.31 Total: 35.21 kcal Atomic # 6 Polarization: -57.36 SS G_CDS: 3.08 Total: -54.28 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.39 Total: -90.10 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.69 Total: 45.18 kcal Total: -67.69 3.69 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032221964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.421 kcal (2) G-P(sol) polarization free energy of solvation -67.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds