Wall clock time and date at job start Mon Mar 30 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47284 * 268.97816 * 3 2 1 5 5 H 1.48497 * 109.47222 * 28.98370 * 3 2 1 6 6 H 1.48503 * 109.47076 * 148.98188 * 3 2 1 7 7 C 1.37875 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 351.91786 * 7 2 1 9 9 C 1.50698 * 120.00275 * 171.92321 * 7 2 1 10 10 H 1.09002 * 109.46929 * 354.98209 * 9 7 2 11 11 N 1.46498 * 109.47244 * 234.98617 * 9 7 2 12 12 C 1.39667 * 120.00256 * 86.45026 * 11 9 7 13 13 C 1.38912 * 120.07762 * 173.91623 * 12 11 9 14 14 C 1.38104 * 119.92770 * 180.02562 * 13 12 11 15 15 C 1.38282 * 120.07474 * 0.02562 * 14 13 12 16 16 C 1.38288 * 120.15028 * 0.27503 * 15 14 13 17 17 C 1.38112 * 120.07340 * 359.45051 * 16 15 14 18 18 C 1.50705 * 109.47240 * 114.98268 * 9 7 2 19 19 C 1.38232 * 119.99704 * 73.34619 * 18 9 7 20 20 C 1.38238 * 119.99468 * 179.78694 * 19 18 9 21 21 C 1.38227 * 120.00361 * 0.44500 * 20 19 18 22 22 C 1.38243 * 120.00029 * 359.81043 * 21 20 19 23 23 C 1.38236 * 119.99716 * 253.62244 * 18 9 7 24 24 H 0.96999 * 120.00213 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99786 * 266.45454 * 11 9 7 26 26 H 1.08004 * 120.03614 * 0.02562 * 13 12 11 27 27 H 1.08003 * 119.96060 * 180.02562 * 14 13 12 28 28 H 1.07993 * 119.92491 * 180.02562 * 15 14 13 29 29 H 1.07997 * 119.96376 * 179.69856 * 16 15 14 30 30 H 1.07996 * 120.03564 * 180.27270 * 17 16 15 31 31 H 1.07995 * 120.00099 * 359.97438 * 19 18 9 32 32 H 1.08003 * 119.99939 * 180.27470 * 20 19 18 33 33 H 1.08006 * 120.00462 * 179.83196 * 21 20 19 34 34 H 1.07993 * 120.00273 * 180.02562 * 22 21 20 35 35 H 1.07996 * 120.00265 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5182 2.0340 -1.3999 5 1 1.4359 2.6588 0.6784 6 1 3.5357 1.4466 0.7215 7 6 2.0045 -1.1940 -0.0005 8 1 1.4726 -2.1247 0.1305 9 6 3.5003 -1.2004 -0.1839 10 1 3.8456 -0.1870 -0.3886 11 7 3.8508 -2.0720 -1.3080 12 6 3.8569 -1.5650 -2.6094 13 6 4.3096 -2.3517 -3.6609 14 6 4.3148 -1.8470 -4.9465 15 6 3.8703 -0.5599 -5.1874 16 6 3.4248 0.2282 -4.1421 17 6 3.4116 -0.2722 -2.8549 18 6 4.1582 -1.7112 1.0720 19 6 4.0972 -3.0560 1.3863 20 6 4.7045 -3.5252 2.5361 21 6 5.3648 -2.6483 3.3762 22 6 5.4213 -1.3027 3.0646 23 6 4.8178 -0.8341 1.9126 24 1 -0.4850 0.8400 0.0004 25 1 4.0786 -3.0013 -1.1485 26 1 4.6573 -3.3569 -3.4734 27 1 4.6663 -2.4584 -5.7645 28 1 3.8750 -0.1679 -6.1937 29 1 3.0829 1.2346 -4.3331 30 1 3.0594 0.3422 -2.0396 31 1 3.5778 -3.7404 0.7321 32 1 4.6607 -4.5765 2.7794 33 1 5.8370 -3.0145 4.2760 34 1 5.9375 -0.6177 3.7207 35 1 4.8619 0.2171 1.6691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032221965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:54 Heat of formation + Delta-G solvation = 37.802510 kcal Electronic energy + Delta-G solvation = -17902.180771 eV Core-core repulsion = 15249.962869 eV Total energy + Delta-G solvation = -2652.217901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58115 -39.68032 -36.83077 -34.53846 -32.71452 -31.72979 -31.61363 -29.62817 -28.46803 -24.78446 -23.63438 -23.34556 -22.44994 -21.31166 -19.28462 -18.46279 -17.69176 -16.96643 -16.54319 -16.32957 -15.82065 -15.23287 -14.89978 -14.81551 -14.44055 -14.31903 -14.20801 -14.14508 -13.64020 -13.35677 -13.01386 -12.75084 -12.37055 -12.13133 -11.96113 -11.88520 -11.60404 -11.43499 -10.81282 -10.74561 -9.73924 -9.71009 -9.48284 -8.41367 -8.08014 -6.43901 0.56959 0.59087 0.65774 0.90518 1.22694 1.23854 1.31770 2.20166 2.65348 3.05915 3.14360 3.16358 4.02566 4.14138 4.18716 4.25322 4.26848 4.36204 4.45888 4.51606 4.72273 4.75965 4.80615 4.87175 5.01717 5.18909 5.24292 5.27682 5.41023 5.61644 5.66581 5.67461 5.72609 5.83852 5.84969 6.06052 6.20798 6.25733 6.58166 6.68000 7.13731 7.21858 8.75266 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.008810 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.205264 B = 3177.311071 C = 4152.474939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.031 3.969 3 Si 0.911 3.089 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.511 4.511 8 H 0.034 0.966 9 C 0.281 3.719 10 H 0.042 0.958 11 N -0.732 5.732 12 C 0.215 3.785 13 C -0.216 4.216 14 C -0.072 4.072 15 C -0.195 4.195 16 C -0.089 4.089 17 C -0.236 4.236 18 C -0.074 4.074 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.118 4.118 23 C -0.149 4.149 24 H 0.268 0.732 25 H 0.392 0.608 26 H 0.133 0.867 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.744 -3.130 -1.299 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.169 4.169 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.163 1.163 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.177 3.823 10 H 0.060 0.940 11 N -0.358 5.358 12 C 0.109 3.891 13 C -0.239 4.239 14 C -0.090 4.090 15 C -0.215 4.215 16 C -0.108 4.108 17 C -0.259 4.259 18 C -0.076 4.076 19 C -0.149 4.149 20 C -0.136 4.136 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.168 4.168 24 H 0.077 0.923 25 H 0.227 0.773 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.531 -2.888 -1.120 12.908 hybrid contribution -0.655 0.638 0.235 0.943 sum 11.876 -2.250 -0.886 12.120 Atomic orbital electron populations 1.70025 1.08036 1.28177 1.50861 1.25750 0.95284 1.02256 0.93587 0.86431 0.80252 0.80022 0.79789 1.18095 1.21031 1.16261 1.21335 0.91303 0.93354 1.48975 0.94728 1.17726 0.92048 0.90483 0.82001 0.93985 1.45334 1.74514 1.12851 1.03125 1.18158 0.92290 0.92768 0.85840 1.20835 1.09582 1.00926 0.92539 1.21173 0.96482 0.95389 0.95951 1.21083 1.05889 0.95474 0.99029 1.21084 0.97646 0.99841 0.92219 1.21109 1.09155 0.97058 0.98535 1.20406 0.94795 0.94704 0.97646 1.20977 1.00445 0.94751 0.98684 1.21413 0.97349 1.00959 0.93892 1.21417 1.00328 0.93059 1.00491 1.21373 0.99231 0.96836 0.96109 1.21198 0.99731 0.99238 0.96638 0.92274 0.77273 0.84892 0.83126 0.84074 0.86144 0.88108 0.87039 0.83714 0.83021 0.83733 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.96 21.45 0.30 -57.47 16 2 C 0.03 1.80 5.32 84.65 0.45 2.25 16 3 Si 0.91 43.32 24.86 68.60 1.71 45.03 16 4 H -0.26 -11.72 6.34 99.48 0.63 -11.09 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.24 -10.43 5.41 99.48 0.54 -9.89 16 7 C -0.51 -28.75 8.82 25.60 0.23 -28.53 16 8 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 9 C 0.28 13.12 1.86 43.50 0.08 13.21 16 10 H 0.04 2.03 3.66 -2.39 -0.01 2.02 16 11 N -0.73 -30.87 5.17 -326.09 -1.69 -32.56 16 12 C 0.22 8.94 6.63 38.22 0.25 9.19 16 13 C -0.22 -7.28 9.90 22.40 0.22 -7.06 16 14 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 15 C -0.19 -5.97 10.04 22.29 0.22 -5.74 16 16 C -0.09 -3.32 10.04 22.25 0.22 -3.09 16 17 C -0.24 -10.43 9.08 22.40 0.20 -10.23 16 18 C -0.07 -3.08 4.93 -19.86 -0.10 -3.18 16 19 C -0.13 -4.75 8.93 22.27 0.20 -4.55 16 20 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 21 C -0.14 -3.59 10.05 22.27 0.22 -3.37 16 22 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 23 C -0.15 -5.62 9.67 22.27 0.22 -5.40 16 24 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.39 14.66 7.29 -92.71 -0.68 13.98 16 26 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 30 H 0.10 4.90 2.46 -2.91 -0.01 4.89 16 31 H 0.11 4.03 7.32 -2.91 -0.02 4.01 16 32 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.11 4.13 6.64 -2.91 -0.02 4.11 16 Total: -1.00 -67.48 288.41 3.60 -63.88 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.19 Total: 35.97 kcal Atomic # 6 Polarization: -57.95 SS G_CDS: 3.09 Total: -54.85 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -1.39 Total: -90.02 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.71 Total: 45.03 kcal Total: -67.48 3.60 -63.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032221965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.686 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds