Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48492 * 109.47512 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46771 * 120.00496 * 3 2 1 6 6 H 1.48504 * 109.47002 * 239.99965 * 3 2 1 7 7 C 1.39927 * 119.99338 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 154.57586 * 7 2 1 9 9 C 1.41037 * 120.00493 * 334.57116 * 7 2 1 10 10 C 1.40731 * 120.30643 * 334.48955 * 9 7 2 11 11 C 1.36448 * 119.94964 * 180.02562 * 10 9 7 12 12 C 1.38898 * 120.60242 * 0.02562 * 11 10 9 13 13 C 1.38167 * 120.62136 * 359.97438 * 12 11 10 14 14 C 1.38748 * 120.02948 * 359.71692 * 13 12 11 15 15 N 1.38725 * 120.29794 * 180.27733 * 14 13 12 16 16 C 1.46503 * 120.00008 * 0.30089 * 15 14 13 17 17 C 1.50706 * 109.47049 * 179.97438 * 16 15 14 18 18 C 1.38233 * 119.99642 * 269.72332 * 17 16 15 19 19 C 1.38234 * 119.99253 * 179.76730 * 18 17 16 20 20 C 1.38233 * 120.00484 * 0.50814 * 19 18 17 21 21 C 1.38234 * 119.99850 * 359.74821 * 20 19 18 22 22 C 1.38237 * 120.00122 * 0.02562 * 21 20 19 23 23 H 0.96996 * 120.00214 * 174.16833 * 1 2 3 24 24 H 1.08003 * 120.02588 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.69763 * 180.02562 * 11 10 9 26 26 H 1.07995 * 119.69171 * 179.97438 * 12 11 10 27 27 H 1.08007 * 119.98214 * 179.97438 * 13 12 11 28 28 H 0.97001 * 120.00249 * 180.29878 * 15 14 13 29 29 H 1.09004 * 109.46914 * 299.99894 * 16 15 14 30 30 H 1.08999 * 109.47016 * 60.00073 * 16 15 14 31 31 H 1.07999 * 120.00514 * 0.02562 * 18 17 16 32 32 H 1.08010 * 119.99937 * 180.23130 * 19 18 17 33 33 H 1.08002 * 120.00272 * 179.71951 * 20 19 18 34 34 H 1.08001 * 120.00269 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00212 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0966 1.6963 1.2124 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0099 -1.2571 -0.4021 9 6 1.4056 -2.3744 0.5234 10 6 0.3931 -2.2729 1.4955 11 6 -0.1847 -3.4023 1.9978 12 6 0.2173 -4.6573 1.5589 13 6 1.2090 -4.7852 0.6055 14 6 1.8097 -3.6538 0.0724 15 7 2.8020 -3.7755 -0.8894 16 6 3.2154 -5.1029 -1.3514 17 6 4.2988 -4.9587 -2.3890 18 6 3.9655 -4.8572 -3.7267 19 6 4.9590 -4.7201 -4.6780 20 6 6.2863 -4.6951 -4.2926 21 6 6.6199 -4.8020 -2.9554 22 6 5.6261 -4.9344 -2.0036 23 1 -0.4850 -0.8356 -0.0853 24 1 0.0742 -1.3017 1.8443 25 1 -0.9617 -3.3197 2.7434 26 1 -0.2498 -5.5416 1.9668 27 1 1.5138 -5.7662 0.2720 28 1 3.2222 -2.9818 -1.2560 29 1 3.5944 -5.6796 -0.5076 30 1 2.3602 -5.6180 -1.7888 31 1 2.9287 -4.8807 -4.0283 32 1 4.6985 -4.6369 -5.7229 33 1 7.0627 -4.5926 -5.0363 34 1 7.6569 -4.7829 -2.6543 35 1 5.8867 -5.0183 -0.9589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034184510.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 36.577099 kcal Electronic energy + Delta-G solvation = -17389.255340 eV Core-core repulsion = 14736.984301 eV Total energy + Delta-G solvation = -2652.271039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.29248 -37.97528 -34.85996 -33.65660 -31.41700 -30.86184 -29.24163 -27.92706 -25.27327 -24.66767 -22.52301 -21.56360 -20.61579 -19.90787 -17.81792 -16.83692 -15.98155 -15.20944 -15.17256 -14.75010 -14.37406 -13.92471 -13.43566 -13.21524 -13.01856 -12.89419 -12.46948 -12.34573 -12.00771 -11.87002 -11.28201 -11.03998 -10.88782 -10.86465 -10.50583 -10.35313 -9.77681 -9.33901 -8.99216 -8.88855 -8.85016 -8.74741 -7.50795 -7.11409 -6.36562 -4.15000 1.33839 1.43329 2.85926 3.08612 3.20802 3.33160 3.40972 3.76535 4.10880 4.66685 4.73765 4.90175 4.90937 5.02525 5.15637 5.47662 5.53862 5.62911 5.84512 5.88155 6.07084 6.12033 6.20710 6.36570 6.46724 6.51229 6.53880 6.73007 6.95557 7.02111 7.14812 7.34182 7.55780 7.66008 7.92797 8.05173 8.19702 8.33524 8.48591 8.85785 8.95331 9.09851 10.21413 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.006594 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.930271 B = 4245.271544 C = 5493.537846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.041 3.959 3 Si 1.061 2.939 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.060 3.940 10 C -0.199 4.199 11 C -0.126 4.126 12 C -0.210 4.210 13 C -0.170 4.170 14 C 0.111 3.889 15 N -0.743 5.743 16 C 0.175 3.825 17 C -0.093 4.093 18 C -0.102 4.102 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.103 4.103 23 H 0.298 0.702 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.396 0.604 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -6.744 -6.413 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.180 4.180 3 Si 0.885 3.115 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.056 3.944 10 C -0.219 4.219 11 C -0.146 4.146 12 C -0.230 4.230 13 C -0.193 4.193 14 C 0.012 3.988 15 N -0.378 5.378 16 C 0.050 3.950 17 C -0.093 4.093 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.121 4.121 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.232 0.768 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.885 -5.278 -6.372 12.141 hybrid contribution 0.322 -1.481 -0.199 1.528 sum 9.207 -6.759 -6.571 13.177 Atomic orbital electron populations 1.70454 1.08129 1.34118 1.30463 1.26792 0.95689 1.03805 0.91693 0.83704 0.75671 0.74388 0.77725 1.20029 1.20234 1.20449 1.20096 1.02619 0.94353 1.38872 0.91419 1.17309 0.93794 0.90645 0.92700 1.20626 1.03311 0.97130 1.00865 1.20196 1.00440 0.93148 1.00828 1.20077 1.03004 0.95650 1.04249 1.20067 1.01740 0.95057 1.02455 1.17852 0.94013 0.93709 0.93218 1.43930 1.43045 1.05047 1.45774 1.19940 0.93738 0.87516 0.93845 1.20075 0.94613 1.00071 0.94531 1.21141 0.99609 0.98763 0.92510 1.21136 0.93004 1.00679 0.99395 1.21134 0.96321 1.00491 0.96083 1.21128 0.99188 1.00745 0.93203 1.21130 0.92298 0.99022 0.99670 0.88853 0.87784 0.89730 0.89594 0.89316 0.76799 0.92889 0.92902 0.85922 0.86172 0.86334 0.86191 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.96 12.32 55.55 0.68 -21.28 16 2 C 0.04 1.05 4.94 -17.32 -0.09 0.97 16 3 Si 1.06 22.19 30.00 -169.99 -5.10 17.09 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.53 -14.04 8.43 -37.89 -0.32 -14.36 16 8 H 0.07 1.74 6.77 -52.49 -0.36 1.38 16 9 C 0.06 1.60 5.31 -106.63 -0.57 1.04 16 10 C -0.20 -5.22 7.89 -39.29 -0.31 -5.53 16 11 C -0.13 -3.04 9.96 -39.98 -0.40 -3.44 16 12 C -0.21 -4.81 10.04 -39.36 -0.40 -5.21 16 13 C -0.17 -3.88 9.30 -39.42 -0.37 -4.24 16 14 C 0.11 2.69 6.68 -83.29 -0.56 2.13 16 15 N -0.74 -15.42 5.62 -59.37 -0.33 -15.76 16 16 C 0.17 2.93 5.03 -5.19 -0.03 2.90 16 17 C -0.09 -1.36 5.25 -104.62 -0.55 -1.91 16 18 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 19 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 20 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16 23 H 0.30 8.36 6.69 -40.82 -0.27 8.09 16 24 H 0.10 2.83 6.49 -52.48 -0.34 2.49 16 25 H 0.08 1.83 8.06 -52.48 -0.42 1.41 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.09 1.80 6.73 -52.48 -0.35 1.45 16 28 H 0.40 8.46 6.70 -40.82 -0.27 8.19 16 29 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 30 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 31 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -28.27 297.18 -9.98 -38.25 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -4.17 Total: 13.94 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -5.53 Total: -36.72 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.35 Total: -37.03 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.10 Total: 17.09 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.27 -9.98 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034184510.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.827 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds