Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48492 * 109.47512 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46771 * 120.00496 * 3 2 1 6 6 H 1.48504 * 109.47002 * 239.99965 * 3 2 1 7 7 C 1.39927 * 119.99338 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 154.57586 * 7 2 1 9 9 C 1.41037 * 120.00493 * 334.57116 * 7 2 1 10 10 C 1.40731 * 120.30643 * 334.48955 * 9 7 2 11 11 C 1.36448 * 119.94964 * 180.02562 * 10 9 7 12 12 C 1.38898 * 120.60242 * 0.02562 * 11 10 9 13 13 C 1.38167 * 120.62136 * 359.97438 * 12 11 10 14 14 C 1.38748 * 120.02948 * 359.71692 * 13 12 11 15 15 N 1.38725 * 120.29794 * 180.27733 * 14 13 12 16 16 C 1.46503 * 120.00008 * 0.30089 * 15 14 13 17 17 C 1.50706 * 109.47049 * 179.97438 * 16 15 14 18 18 C 1.38233 * 119.99642 * 269.72332 * 17 16 15 19 19 C 1.38234 * 119.99253 * 179.76730 * 18 17 16 20 20 C 1.38233 * 120.00484 * 0.50814 * 19 18 17 21 21 C 1.38234 * 119.99850 * 359.74821 * 20 19 18 22 22 C 1.38237 * 120.00122 * 0.02562 * 21 20 19 23 23 H 0.96996 * 120.00214 * 174.16833 * 1 2 3 24 24 H 1.08003 * 120.02588 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.69763 * 180.02562 * 11 10 9 26 26 H 1.07995 * 119.69171 * 179.97438 * 12 11 10 27 27 H 1.08007 * 119.98214 * 179.97438 * 13 12 11 28 28 H 0.97001 * 120.00249 * 180.29878 * 15 14 13 29 29 H 1.09004 * 109.46914 * 299.99894 * 16 15 14 30 30 H 1.08999 * 109.47016 * 60.00073 * 16 15 14 31 31 H 1.07999 * 120.00514 * 0.02562 * 18 17 16 32 32 H 1.08010 * 119.99937 * 180.23130 * 19 18 17 33 33 H 1.08002 * 120.00272 * 179.71951 * 20 19 18 34 34 H 1.08001 * 120.00269 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00212 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0966 1.6963 1.2124 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0099 -1.2571 -0.4021 9 6 1.4056 -2.3744 0.5234 10 6 0.3931 -2.2729 1.4955 11 6 -0.1847 -3.4023 1.9978 12 6 0.2173 -4.6573 1.5589 13 6 1.2090 -4.7852 0.6055 14 6 1.8097 -3.6538 0.0724 15 7 2.8020 -3.7755 -0.8894 16 6 3.2154 -5.1029 -1.3514 17 6 4.2988 -4.9587 -2.3890 18 6 3.9655 -4.8572 -3.7267 19 6 4.9590 -4.7201 -4.6780 20 6 6.2863 -4.6951 -4.2926 21 6 6.6199 -4.8020 -2.9554 22 6 5.6261 -4.9344 -2.0036 23 1 -0.4850 -0.8356 -0.0853 24 1 0.0742 -1.3017 1.8443 25 1 -0.9617 -3.3197 2.7434 26 1 -0.2498 -5.5416 1.9668 27 1 1.5138 -5.7662 0.2720 28 1 3.2222 -2.9818 -1.2560 29 1 3.5944 -5.6796 -0.5076 30 1 2.3602 -5.6180 -1.7888 31 1 2.9287 -4.8807 -4.0283 32 1 4.6985 -4.6369 -5.7229 33 1 7.0627 -4.5926 -5.0363 34 1 7.6569 -4.7829 -2.6543 35 1 5.8867 -5.0183 -0.9589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034184510.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 22.981503 kcal Electronic energy + Delta-G solvation = -17389.844889 eV Core-core repulsion = 14736.984301 eV Total energy + Delta-G solvation = -2652.860588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43546 -39.68361 -36.44297 -35.54827 -32.73535 -31.81522 -31.12881 -29.57805 -26.96942 -26.31357 -23.48519 -23.05642 -22.24467 -21.58000 -19.71381 -18.09059 -17.45507 -16.78859 -16.26124 -16.23280 -15.89880 -15.57026 -14.84697 -14.63347 -14.50531 -14.24764 -14.04684 -13.75808 -13.58473 -13.39724 -13.04730 -12.65513 -12.33848 -11.98338 -11.94253 -11.91462 -11.63819 -11.21991 -10.81372 -10.68379 -9.85303 -9.77478 -9.45713 -9.12635 -8.18380 -6.14523 0.33527 0.47039 0.96801 1.17734 1.50184 1.64474 1.78341 2.37208 2.68937 2.78883 3.21789 3.66460 3.75542 3.93845 4.13138 4.26512 4.38321 4.40494 4.50699 4.56200 4.64587 4.74594 4.77903 5.02537 5.05871 5.13643 5.24703 5.45391 5.52638 5.57888 5.61114 5.68191 5.76684 5.89338 6.07558 6.11406 6.26315 6.44278 6.60584 7.00933 7.09379 7.21754 8.17864 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.006594 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.930271 B = 4245.271544 C = 5493.537846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.002 3.998 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.555 4.555 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.215 4.215 11 C -0.143 4.143 12 C -0.197 4.197 13 C -0.180 4.180 14 C 0.110 3.890 15 N -0.741 5.741 16 C 0.177 3.823 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.115 4.115 23 H 0.280 0.720 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.391 0.609 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 -7.715 -7.403 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.212 4.212 3 Si 0.930 3.070 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.019 3.981 10 C -0.236 4.236 11 C -0.163 4.163 12 C -0.217 4.217 13 C -0.203 4.203 14 C 0.009 3.991 15 N -0.374 5.374 16 C 0.053 3.947 17 C -0.112 4.112 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.134 4.134 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.226 0.774 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.743 -6.291 -7.379 14.472 hybrid contribution -0.213 -1.379 0.083 1.398 sum 10.531 -7.670 -7.297 14.932 Atomic orbital electron populations 1.70574 1.08933 1.32856 1.33367 1.28172 0.95711 1.07044 0.90296 0.83069 0.74758 0.70419 0.78770 1.19954 1.19279 1.18384 1.20247 1.02754 0.95242 1.40230 0.91513 1.17644 0.94819 0.91994 0.93656 1.20619 1.04184 0.97084 1.01672 1.20448 1.01178 0.93073 1.01624 1.20519 1.01943 0.96260 1.02940 1.20417 1.01627 0.95908 1.02396 1.18095 0.94243 0.93383 0.93372 1.44101 1.41937 1.06611 1.44738 1.20038 0.94598 0.85394 0.94671 1.19943 0.94529 1.02367 0.94396 1.21257 1.00182 0.99506 0.92634 1.21452 0.93041 0.99764 1.00226 1.21552 0.96789 0.98664 0.96590 1.21465 1.00058 0.99633 0.93205 1.21266 0.92267 0.99475 1.00366 0.90797 0.89908 0.87725 0.86274 0.86533 0.77442 0.92351 0.92768 0.86231 0.83870 0.83221 0.83654 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.08 12.32 21.83 0.27 -46.81 16 2 C 0.00 0.10 4.94 85.24 0.42 0.52 16 3 Si 1.11 45.21 30.00 68.60 2.06 47.26 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.55 -30.31 8.43 23.37 0.20 -30.11 16 8 H 0.07 3.53 6.77 -2.91 -0.02 3.51 16 9 C 0.02 1.29 5.31 -21.17 -0.11 1.18 16 10 C -0.21 -11.65 7.89 22.46 0.18 -11.47 16 11 C -0.14 -6.88 9.96 22.01 0.22 -6.66 16 12 C -0.20 -8.69 10.04 22.41 0.22 -8.46 16 13 C -0.18 -7.98 9.30 22.37 0.21 -7.77 16 14 C 0.11 5.34 6.68 38.99 0.26 5.60 16 15 N -0.74 -30.85 5.62 -341.75 -1.92 -32.78 16 16 C 0.18 5.82 5.03 85.63 0.43 6.25 16 17 C -0.11 -3.21 5.25 -19.86 -0.10 -3.31 16 18 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 19 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 20 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 22 C -0.12 -2.94 9.70 22.27 0.22 -2.73 16 23 H 0.28 16.57 6.69 -92.71 -0.62 15.95 16 24 H 0.08 4.75 6.49 -2.91 -0.02 4.73 16 25 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 26 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.12 4.46 6.73 -2.91 -0.02 4.44 16 28 H 0.39 16.96 6.70 -92.71 -0.62 16.34 16 29 H 0.06 1.85 7.88 -2.38 -0.02 1.83 16 30 H 0.05 1.76 7.90 -2.39 -0.02 1.74 16 31 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.12 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -62.20 297.18 4.05 -58.15 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: 0.62 Total: 40.94 kcal Atomic # 6 Polarization: -69.80 SS G_CDS: 3.03 Total: -66.77 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.65 Total: -79.58 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.06 Total: 47.26 kcal Total: -62.20 4.05 -58.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034184510.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.132 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds