Wall clock time and date at job start Mon Mar 30 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.39466 * 120.00071 * 179.97438 * 10 9 7 12 12 C 1.38788 * 120.13338 * 359.72326 * 11 10 9 13 13 C 1.38131 * 120.03769 * 179.74272 * 12 11 10 14 14 C 1.38421 * 120.32814 * 0.56071 * 13 12 11 15 15 C 1.38006 * 120.27566 * 359.69466 * 14 13 12 16 16 C 1.39288 * 119.95325 * 0.02562 * 15 14 13 17 17 C 1.48299 * 120.15838 * 179.97438 * 16 15 14 18 18 C 1.39383 * 120.12125 * 129.75149 * 17 16 15 19 19 C 1.38007 * 119.87028 * 179.72280 * 18 17 16 20 20 C 1.38332 * 120.12812 * 0.54790 * 19 18 17 21 21 C 1.38327 * 120.24918 * 359.72406 * 20 19 18 22 22 C 1.38008 * 120.12616 * 0.02562 * 21 20 19 23 23 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.98391 * 359.97438 * 12 11 10 28 28 H 1.08003 * 119.83474 * 180.27282 * 13 12 11 29 29 H 1.07992 * 119.86177 * 179.71673 * 14 13 12 30 30 H 1.07998 * 120.02425 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.06487 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.93733 * 180.24846 * 19 18 17 33 33 H 1.07997 * 119.87560 * 179.70356 * 20 19 18 34 34 H 1.07994 * 119.93860 * 179.97438 * 21 20 19 35 35 H 1.08004 * 120.06555 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 5.3711 -2.8300 0.0009 12 6 6.2754 -1.7772 -0.0048 13 6 7.6331 -2.0319 0.0005 14 6 8.0998 -3.3350 -0.0001 15 6 7.2123 -4.3919 0.0003 16 6 5.8409 -4.1484 0.0008 17 6 4.8832 -5.2807 0.0007 18 6 3.8431 -5.3173 0.9279 19 6 2.9515 -6.3706 0.9194 20 6 3.0951 -7.3945 0.0004 21 6 4.1287 -7.3663 -0.9184 22 6 5.0233 -6.3154 -0.9226 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6803 -0.8889 25 1 3.8746 -0.6798 0.8911 26 1 3.3696 -3.3124 0.0002 27 1 5.9176 -0.7583 -0.0097 28 1 8.3339 -1.2101 0.0005 29 1 9.1628 -3.5255 -0.0006 30 1 7.5809 -5.4070 0.0002 31 1 3.7329 -4.5208 1.6489 32 1 2.1428 -6.3980 1.6348 33 1 2.3978 -8.2192 0.0005 34 1 4.2364 -8.1685 -1.6333 35 1 5.8297 -6.2942 -1.6407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034936549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:10 Heat of formation + Delta-G solvation = 44.965047 kcal Electronic energy + Delta-G solvation = -17500.510787 eV Core-core repulsion = 14848.603477 eV Total energy + Delta-G solvation = -2651.907310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.70804 -38.03086 -35.17520 -32.73221 -32.25269 -30.72049 -29.50345 -28.69289 -26.67435 -23.37914 -22.75302 -21.98066 -20.68043 -20.44241 -17.63878 -16.87341 -16.07764 -15.54727 -15.36174 -14.62803 -14.35196 -14.11964 -13.59447 -13.46439 -13.20357 -13.06135 -12.97673 -12.57575 -12.37841 -11.99751 -11.59934 -11.13648 -10.93602 -10.90955 -10.70570 -10.44373 -10.02128 -9.55646 -9.51028 -9.01437 -8.74850 -8.72577 -8.10650 -6.68034 -6.24793 -4.26971 1.24376 1.58782 1.98709 2.11468 3.19360 3.26805 3.28533 3.94608 4.25506 4.30514 4.36088 4.93731 5.09219 5.10357 5.15377 5.30004 5.33019 5.40663 5.63691 5.71242 5.77394 5.94889 6.10885 6.16039 6.22956 6.35538 6.55089 6.63962 6.66486 6.69510 6.82243 6.93334 6.95831 6.99175 7.19164 7.27411 7.38267 7.91491 8.36560 8.55007 8.78198 9.34134 10.87646 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.007066 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.018789 B = 3961.433538 C = 5382.187863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.220 3.780 10 N -0.718 5.718 11 C 0.247 3.753 12 C -0.207 4.207 13 C -0.065 4.065 14 C -0.203 4.203 15 C -0.055 4.055 16 C -0.153 4.153 17 C -0.020 4.020 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.115 4.115 23 H 0.268 0.732 24 H 0.014 0.986 25 H 0.020 0.980 26 H 0.399 0.601 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.833 -10.378 0.120 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.098 3.902 10 N -0.341 5.341 11 C 0.136 3.864 12 C -0.230 4.230 13 C -0.084 4.084 14 C -0.224 4.224 15 C -0.074 4.074 16 C -0.159 4.159 17 C -0.020 4.020 18 C -0.137 4.137 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.133 4.133 23 H 0.078 0.922 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.237 0.763 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.520 -10.013 0.123 15.264 hybrid contribution -0.003 0.715 -0.052 0.717 sum 11.516 -9.298 0.071 14.802 Atomic orbital electron populations 1.69881 1.06216 1.27385 1.49353 1.24812 0.94801 0.99078 0.93979 0.86810 0.80432 0.83399 0.78905 1.19846 1.20812 1.18775 1.21050 0.88543 0.95210 1.53093 0.90385 1.19535 0.95787 0.79227 0.95687 1.45437 1.02084 1.09847 1.76745 1.18003 0.85409 0.92122 0.90818 1.20644 0.92729 0.98191 1.11483 1.20867 0.94612 0.96449 0.96452 1.20614 0.98681 0.92604 1.10464 1.20792 0.91343 0.98412 0.96808 1.18180 0.92944 0.90302 1.14447 1.18716 0.94628 0.93625 0.95037 1.21383 0.94802 0.98720 0.98785 1.21107 0.98845 0.94137 0.98954 1.21126 0.98464 0.98926 0.96323 1.21031 0.95451 0.98367 0.98957 1.21201 0.99621 0.94007 0.98499 0.92238 0.96815 0.96241 0.76348 0.86022 0.86792 0.87026 0.86776 0.85585 0.85996 0.86424 0.86357 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 9 C 0.22 5.25 3.73 -5.19 -0.02 5.23 16 10 N -0.72 -15.20 5.27 -59.61 -0.31 -15.51 16 11 C 0.25 4.69 6.58 -83.54 -0.55 4.14 16 12 C -0.21 -3.70 9.30 -39.42 -0.37 -4.07 16 13 C -0.06 -0.97 10.03 -39.55 -0.40 -1.37 16 14 C -0.20 -2.84 10.03 -39.60 -0.40 -3.24 16 15 C -0.05 -0.81 9.51 -39.28 -0.37 -1.18 16 16 C -0.15 -2.59 5.49 -104.72 -0.57 -3.16 16 17 C -0.02 -0.32 5.07 -104.91 -0.53 -0.85 16 18 C -0.12 -1.90 7.72 -39.24 -0.30 -2.20 16 19 C -0.11 -1.59 10.03 -39.63 -0.40 -1.99 16 20 C -0.13 -1.66 10.04 -39.51 -0.40 -2.06 16 21 C -0.12 -1.51 10.03 -39.63 -0.40 -1.91 16 22 C -0.12 -1.62 9.51 -39.24 -0.37 -1.99 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.01 0.34 7.36 -51.93 -0.38 -0.05 16 25 H 0.02 0.47 7.02 -51.93 -0.36 0.11 16 26 H 0.40 8.41 5.48 -40.82 -0.22 8.19 16 27 H 0.12 2.22 6.73 -52.49 -0.35 1.86 16 28 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 29 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.11 1.42 8.04 -52.49 -0.42 1.00 16 31 H 0.13 2.12 7.51 -52.49 -0.39 1.72 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.50 8.04 -52.48 -0.42 1.08 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -29.43 296.45 -9.51 -38.94 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.25 Total: 9.60 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -5.51 Total: -27.88 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.46 Total: -41.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.43 -9.51 -38.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.909 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds