Wall clock time and date at job start Mon Mar 30 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.39466 * 120.00071 * 179.97438 * 10 9 7 12 12 C 1.38788 * 120.13338 * 359.72326 * 11 10 9 13 13 C 1.38131 * 120.03769 * 179.74272 * 12 11 10 14 14 C 1.38421 * 120.32814 * 0.56071 * 13 12 11 15 15 C 1.38006 * 120.27566 * 359.69466 * 14 13 12 16 16 C 1.39288 * 119.95325 * 0.02562 * 15 14 13 17 17 C 1.48299 * 120.15838 * 179.97438 * 16 15 14 18 18 C 1.39383 * 120.12125 * 129.75149 * 17 16 15 19 19 C 1.38007 * 119.87028 * 179.72280 * 18 17 16 20 20 C 1.38332 * 120.12812 * 0.54790 * 19 18 17 21 21 C 1.38327 * 120.24918 * 359.72406 * 20 19 18 22 22 C 1.38008 * 120.12616 * 0.02562 * 21 20 19 23 23 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.98391 * 359.97438 * 12 11 10 28 28 H 1.08003 * 119.83474 * 180.27282 * 13 12 11 29 29 H 1.07992 * 119.86177 * 179.71673 * 14 13 12 30 30 H 1.07998 * 120.02425 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.06487 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.93733 * 180.24846 * 19 18 17 33 33 H 1.07997 * 119.87560 * 179.70356 * 20 19 18 34 34 H 1.07994 * 119.93860 * 179.97438 * 21 20 19 35 35 H 1.08004 * 120.06555 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 5.3711 -2.8300 0.0009 12 6 6.2754 -1.7772 -0.0048 13 6 7.6331 -2.0319 0.0005 14 6 8.0998 -3.3350 -0.0001 15 6 7.2123 -4.3919 0.0003 16 6 5.8409 -4.1484 0.0008 17 6 4.8832 -5.2807 0.0007 18 6 3.8431 -5.3173 0.9279 19 6 2.9515 -6.3706 0.9194 20 6 3.0951 -7.3945 0.0004 21 6 4.1287 -7.3663 -0.9184 22 6 5.0233 -6.3154 -0.9226 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6803 -0.8889 25 1 3.8746 -0.6798 0.8911 26 1 3.3696 -3.3124 0.0002 27 1 5.9176 -0.7583 -0.0097 28 1 8.3339 -1.2101 0.0005 29 1 9.1628 -3.5255 -0.0006 30 1 7.5809 -5.4070 0.0002 31 1 3.7329 -4.5208 1.6489 32 1 2.1428 -6.3980 1.6348 33 1 2.3978 -8.2192 0.0005 34 1 4.2364 -8.1685 -1.6333 35 1 5.8297 -6.2942 -1.6407 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034936549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:06 Heat of formation + Delta-G solvation = 29.316263 kcal Electronic energy + Delta-G solvation = -17501.189369 eV Core-core repulsion = 14848.603477 eV Total energy + Delta-G solvation = -2652.585892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.92484 -39.19276 -36.75958 -34.67191 -33.51802 -31.82974 -31.05139 -29.95304 -28.30623 -24.80956 -24.13932 -23.23441 -22.00793 -21.77475 -19.41319 -18.15840 -17.54853 -17.07525 -16.56508 -16.07967 -15.68477 -15.48533 -15.17085 -14.88764 -14.71943 -14.33455 -14.20757 -14.10380 -13.73799 -13.34484 -12.98142 -12.72226 -12.61532 -12.13097 -11.93446 -11.88296 -11.75238 -11.52513 -11.09305 -10.77970 -10.17295 -9.84153 -9.28725 -8.41944 -8.12494 -6.50386 0.09368 0.49313 0.76069 0.90369 1.32088 1.33282 1.44738 2.26102 2.76255 2.85944 2.92752 3.09814 3.78950 4.02586 4.11400 4.15484 4.27529 4.32321 4.55634 4.59761 4.61822 4.63169 4.77699 4.91233 5.02525 5.03065 5.14722 5.19168 5.27310 5.44110 5.53871 5.61429 5.65328 5.74224 5.78149 5.90070 6.11611 6.18766 6.47618 6.64085 6.97251 7.17662 8.74026 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.007066 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.018789 B = 3961.433538 C = 5382.187863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.552 4.552 8 H 0.039 0.961 9 C 0.238 3.762 10 N -0.733 5.733 11 C 0.213 3.787 12 C -0.227 4.227 13 C -0.065 4.065 14 C -0.188 4.188 15 C -0.057 4.057 16 C -0.157 4.157 17 C -0.041 4.041 18 C -0.140 4.140 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.120 4.120 23 H 0.272 0.728 24 H 0.014 0.986 25 H 0.017 0.983 26 H 0.395 0.605 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.729 -11.173 -0.550 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.180 4.180 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.114 3.886 10 N -0.359 5.359 11 C 0.106 3.894 12 C -0.250 4.250 13 C -0.084 4.084 14 C -0.208 4.208 15 C -0.075 4.075 16 C -0.162 4.162 17 C -0.041 4.041 18 C -0.159 4.159 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.134 4.134 22 C -0.138 4.138 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.231 0.769 27 H 0.129 0.871 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.469 -10.836 -0.545 18.085 hybrid contribution -0.858 0.780 0.157 1.170 sum 13.611 -10.056 -0.389 16.927 Atomic orbital electron populations 1.70021 1.08128 1.28730 1.50698 1.25782 0.95677 1.03250 0.93276 0.85693 0.79548 0.78063 0.79601 1.18729 1.20054 1.17060 1.21299 0.90754 0.93984 1.52972 0.94317 1.19138 0.92977 0.81128 0.95319 1.45179 1.03279 1.08239 1.79246 1.18304 0.84340 0.93689 0.93040 1.20789 0.94144 0.97448 1.12631 1.21219 0.93684 0.98152 0.95300 1.21092 1.00471 0.91766 1.07442 1.21168 0.90335 1.00193 0.95829 1.18456 0.94333 0.89710 1.13679 1.18835 0.94884 0.94334 0.96021 1.21335 0.96153 0.99052 0.99336 1.21332 0.98825 0.94277 0.99913 1.21505 0.98873 0.98948 0.95342 1.21447 0.94412 0.98570 0.98984 1.21449 1.00489 0.93686 0.98145 0.91868 0.96846 0.96504 0.76921 0.87144 0.83801 0.83319 0.84088 0.87895 0.85131 0.83517 0.82987 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.96 21.44 0.30 -57.35 16 2 C 0.02 1.13 5.47 84.65 0.46 1.60 16 3 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.88 16 7 C -0.55 -32.08 9.83 25.60 0.25 -31.83 16 8 H 0.04 2.47 7.84 -2.91 -0.02 2.45 16 9 C 0.24 11.75 3.73 85.64 0.32 12.07 16 10 N -0.73 -32.67 5.27 -342.50 -1.81 -34.48 16 11 C 0.21 8.24 6.58 38.48 0.25 8.50 16 12 C -0.23 -8.01 9.30 22.38 0.21 -7.81 16 13 C -0.07 -1.78 10.03 22.29 0.22 -1.55 16 14 C -0.19 -4.55 10.03 22.26 0.22 -4.33 16 15 C -0.06 -1.52 9.51 22.47 0.21 -1.31 16 16 C -0.16 -5.23 5.49 -19.93 -0.11 -5.34 16 17 C -0.04 -1.30 5.07 -20.05 -0.10 -1.40 16 18 C -0.14 -4.70 7.72 22.49 0.17 -4.53 16 19 C -0.13 -3.60 10.03 22.24 0.22 -3.37 16 20 C -0.13 -3.06 10.04 22.31 0.22 -2.84 16 21 C -0.12 -2.64 10.03 22.24 0.22 -2.42 16 22 C -0.12 -3.15 9.51 22.49 0.21 -2.94 16 23 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 24 H 0.01 0.67 7.36 -2.39 -0.02 0.65 16 25 H 0.02 0.84 7.02 -2.39 -0.02 0.82 16 26 H 0.39 17.89 5.48 -92.71 -0.51 17.38 16 27 H 0.11 4.04 6.73 -2.91 -0.02 4.02 16 28 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.14 2.98 8.04 -2.91 -0.02 2.95 16 31 H 0.10 3.81 7.51 -2.91 -0.02 3.79 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.14 3.05 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -66.60 296.45 3.90 -62.69 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.52 Total: 31.48 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 3.00 Total: -47.50 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -1.51 Total: -91.83 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -66.60 3.90 -62.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.009 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds