Wall clock time and date at job start Mon Mar 30 2020 07:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47403 * 2 1 4 4 C 1.52995 * 109.47192 * 239.99717 * 2 1 3 5 5 H 1.08993 * 109.47459 * 178.66188 * 4 2 1 6 6 N 1.46906 * 109.47261 * 298.66911 * 4 2 1 7 7 C 1.46896 * 110.99727 * 273.43751 * 6 4 2 8 8 C 1.52996 * 109.47227 * 175.00609 * 7 6 4 9 9 C 1.50697 * 109.47329 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99931 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99952 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99843 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47042 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46955 * 119.99735 * 13 11 9 16 16 H 1.48501 * 109.46851 * 239.99692 * 13 11 9 17 17 C 1.50706 * 109.47053 * 58.66497 * 4 2 1 18 18 C 1.33388 * 125.19889 * 99.99931 * 17 4 2 19 19 C 1.38434 * 114.91663 * 179.97438 * 18 17 4 20 20 C 1.33385 * 114.92015 * 359.97438 * 19 18 17 21 21 S 1.75885 * 125.20234 * 279.69768 * 17 4 2 22 22 H 1.08994 * 109.47269 * 59.99948 * 1 2 3 23 23 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46889 * 300.00235 * 1 2 3 25 25 H 1.09002 * 109.46699 * 119.99773 * 2 1 3 26 26 H 1.09007 * 109.47338 * 58.14674 * 3 2 1 27 27 H 1.08992 * 109.47236 * 178.14772 * 3 2 1 28 28 H 1.09003 * 109.46921 * 298.15280 * 3 2 1 29 29 H 1.00895 * 110.99862 * 149.48813 * 6 4 2 30 30 H 1.09003 * 109.47201 * 295.00867 * 7 6 4 31 31 H 1.09004 * 109.47031 * 55.00761 * 7 6 4 32 32 H 1.09003 * 109.47241 * 300.00234 * 8 7 6 33 33 H 1.09004 * 109.46991 * 60.00127 * 8 7 6 34 34 H 0.97004 * 120.00052 * 180.02562 * 12 11 9 35 35 H 1.07993 * 122.54573 * 359.97438 * 18 17 4 36 36 H 1.07994 * 122.53525 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.19893 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1297 -0.7006 -1.2613 6 7 1.5768 -2.1153 -1.2331 7 6 2.5050 -2.9698 -0.4807 8 6 1.9289 -4.3836 -0.3799 9 6 2.8808 -5.2600 0.3925 10 1 3.8045 -4.8499 0.7730 11 6 2.5729 -6.5859 0.6125 12 7 1.4483 -7.0855 0.1486 13 14 3.7533 -7.6725 1.5693 14 1 4.9374 -6.8759 1.9795 15 1 3.0705 -8.2013 2.7773 16 1 4.1898 -8.8040 0.7122 17 6 1.5108 -0.0303 -2.4795 18 6 2.1956 0.8332 -3.2309 19 6 1.5011 1.3415 -4.3151 20 6 0.2525 0.8903 -4.4444 21 16 -0.1017 -0.2448 -3.1483 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6499 1.9659 0.8729 27 1 3.1295 1.4426 0.0332 28 1 1.7040 1.9466 -0.9061 29 1 1.4446 -2.4632 -2.1710 30 1 3.4652 -3.0046 -0.9954 31 1 2.6439 -2.5618 0.5205 32 1 0.9687 -4.3488 0.1348 33 1 1.7899 -4.7915 -1.3811 34 1 1.2315 -8.0182 0.3036 35 1 3.2147 1.1145 -3.0102 36 1 1.9374 2.0490 -5.0045 37 1 -0.4348 1.1761 -5.2269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042226572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:27 Heat of formation + Delta-G solvation = 13.601404 kcal Electronic energy + Delta-G solvation = -16518.914703 eV Core-core repulsion = 14001.091314 eV Total energy + Delta-G solvation = -2517.823389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.72688 -36.61387 -34.18240 -32.53110 -30.20138 -28.56803 -26.90405 -25.39572 -23.59678 -23.04723 -20.78787 -19.58986 -18.98823 -16.90627 -16.23623 -15.59523 -15.11145 -14.91434 -14.43676 -14.08357 -13.55853 -13.07707 -12.68003 -12.62134 -12.47627 -12.33958 -11.87977 -11.82807 -11.70397 -11.26937 -10.95967 -10.81429 -10.70044 -10.56583 -10.49101 -10.40143 -9.94157 -9.41573 -9.12558 -8.55953 -8.34586 -8.26157 -7.85818 -5.98790 -4.01257 1.07048 1.73792 2.16180 2.78439 3.31736 3.39147 3.43027 4.42314 4.62316 4.77433 5.07696 5.17792 5.26828 5.37374 5.50404 5.54039 5.58713 5.68283 5.83327 5.95225 6.08383 6.12273 6.16666 6.23564 6.31583 6.34075 6.42401 6.52258 6.57719 6.71567 6.99261 7.45055 7.72984 7.79918 7.94540 8.09108 8.44306 9.06294 9.62538 11.12626 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.004671 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.146012 B = 5992.532756 C = 6299.177767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.148 4.148 4 C 0.157 3.843 5 H 0.056 0.944 6 N -0.683 5.683 7 C 0.067 3.933 8 C 0.027 3.973 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.135 4.135 20 C -0.240 4.240 21 S 0.145 5.855 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.338 0.662 30 H 0.016 0.984 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 17.936 -6.436 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.205 4.205 4 C 0.045 3.955 5 H 0.074 0.926 6 N -0.315 5.315 7 C -0.061 4.061 8 C -0.010 4.010 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.281 4.281 18 C -0.179 4.179 19 C -0.166 4.166 20 C -0.376 4.376 21 S 0.409 5.591 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.215 16.995 -5.529 18.159 hybrid contribution 2.638 0.138 -0.610 2.711 sum -0.577 17.133 -6.139 18.209 Atomic orbital electron populations 1.21905 0.94692 1.03212 1.00643 1.21045 0.96976 0.94808 0.97148 1.21881 1.00522 0.96461 1.01684 1.20128 0.96616 0.89176 0.89553 0.92603 1.60728 1.50178 1.00040 1.20504 1.22217 0.92107 0.95533 0.96271 1.19042 0.96795 0.88038 0.97144 1.21211 1.05244 0.94833 1.34685 0.92761 1.24995 0.95293 0.98104 0.95917 1.69985 1.23153 1.14134 1.45916 0.86549 0.81155 0.80572 0.79799 1.19786 1.20984 1.21046 1.24747 0.97755 1.03898 1.01714 1.20065 1.01458 1.00181 0.96214 1.20064 0.94249 1.02831 0.99450 1.25790 1.01090 1.05694 1.05019 1.84605 1.12871 1.42397 1.19178 0.92762 0.90790 0.93634 0.90462 0.92815 0.93150 0.92559 0.84374 0.96560 0.92179 0.95601 0.96819 0.93062 0.84815 0.84946 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.43 37.16 0.31 -1.71 16 2 C -0.08 -1.11 2.84 -90.62 -0.26 -1.37 16 3 C -0.15 -1.71 8.95 37.16 0.33 -1.37 16 4 C 0.16 2.31 2.27 -68.86 -0.16 2.16 16 5 H 0.06 0.84 7.81 -51.93 -0.41 0.43 16 6 N -0.68 -12.05 5.39 -107.95 -0.58 -12.63 16 7 C 0.07 1.39 5.39 -3.83 -0.02 1.37 16 8 C 0.03 0.71 5.27 -27.89 -0.15 0.56 16 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.16 -2.17 3.65 -36.00 -0.13 -2.30 16 18 C -0.15 -1.78 9.22 -41.20 -0.38 -2.16 16 19 C -0.13 -1.47 10.18 -41.21 -0.42 -1.89 16 20 C -0.24 -2.63 11.23 29.04 0.33 -2.30 16 21 S 0.15 1.84 20.40 -107.50 -2.19 -0.35 16 22 H 0.05 0.71 5.44 -51.88 -0.28 0.43 16 23 H 0.07 1.17 7.64 -51.93 -0.40 0.78 16 24 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.08 1.16 7.47 -51.93 -0.39 0.78 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.65 6.62 -51.93 -0.34 0.30 16 29 H 0.34 5.99 8.13 -39.29 -0.32 5.67 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 1.25 7.43 -51.93 -0.39 0.86 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -29.56 311.54 -9.18 -38.75 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.87 Total: 1.64 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.95 Total: -22.55 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.15 Total: -38.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.19 Total: -0.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.56 -9.18 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042226572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.348 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds