Wall clock time and date at job start Mon Mar 30 2020 07:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47403 * 2 1 4 4 C 1.52995 * 109.47192 * 239.99717 * 2 1 3 5 5 H 1.08993 * 109.47459 * 178.66188 * 4 2 1 6 6 N 1.46906 * 109.47261 * 298.66911 * 4 2 1 7 7 C 1.46896 * 110.99727 * 273.43751 * 6 4 2 8 8 C 1.52996 * 109.47227 * 175.00609 * 7 6 4 9 9 C 1.50697 * 109.47329 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99931 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99952 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99843 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47042 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46955 * 119.99735 * 13 11 9 16 16 H 1.48501 * 109.46851 * 239.99692 * 13 11 9 17 17 C 1.50706 * 109.47053 * 58.66497 * 4 2 1 18 18 C 1.33388 * 125.19889 * 99.99931 * 17 4 2 19 19 C 1.38434 * 114.91663 * 179.97438 * 18 17 4 20 20 C 1.33385 * 114.92015 * 359.97438 * 19 18 17 21 21 S 1.75885 * 125.20234 * 279.69768 * 17 4 2 22 22 H 1.08994 * 109.47269 * 59.99948 * 1 2 3 23 23 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46889 * 300.00235 * 1 2 3 25 25 H 1.09002 * 109.46699 * 119.99773 * 2 1 3 26 26 H 1.09007 * 109.47338 * 58.14674 * 3 2 1 27 27 H 1.08992 * 109.47236 * 178.14772 * 3 2 1 28 28 H 1.09003 * 109.46921 * 298.15280 * 3 2 1 29 29 H 1.00895 * 110.99862 * 149.48813 * 6 4 2 30 30 H 1.09003 * 109.47201 * 295.00867 * 7 6 4 31 31 H 1.09004 * 109.47031 * 55.00761 * 7 6 4 32 32 H 1.09003 * 109.47241 * 300.00234 * 8 7 6 33 33 H 1.09004 * 109.46991 * 60.00127 * 8 7 6 34 34 H 0.97004 * 120.00052 * 180.02562 * 12 11 9 35 35 H 1.07993 * 122.54573 * 359.97438 * 18 17 4 36 36 H 1.07994 * 122.53525 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.19893 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1297 -0.7006 -1.2613 6 7 1.5768 -2.1153 -1.2331 7 6 2.5050 -2.9698 -0.4807 8 6 1.9289 -4.3836 -0.3799 9 6 2.8808 -5.2600 0.3925 10 1 3.8045 -4.8499 0.7730 11 6 2.5729 -6.5859 0.6125 12 7 1.4483 -7.0855 0.1486 13 14 3.7533 -7.6725 1.5693 14 1 4.9374 -6.8759 1.9795 15 1 3.0705 -8.2013 2.7773 16 1 4.1898 -8.8040 0.7122 17 6 1.5108 -0.0303 -2.4795 18 6 2.1956 0.8332 -3.2309 19 6 1.5011 1.3415 -4.3151 20 6 0.2525 0.8903 -4.4444 21 16 -0.1017 -0.2448 -3.1483 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6499 1.9659 0.8729 27 1 3.1295 1.4426 0.0332 28 1 1.7040 1.9466 -0.9061 29 1 1.4446 -2.4632 -2.1710 30 1 3.4652 -3.0046 -0.9954 31 1 2.6439 -2.5618 0.5205 32 1 0.9687 -4.3488 0.1348 33 1 1.7899 -4.7915 -1.3811 34 1 1.2315 -8.0182 0.3036 35 1 3.2147 1.1145 -3.0102 36 1 1.9374 2.0490 -5.0045 37 1 -0.4348 1.1761 -5.2269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042226572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:26 Heat of formation + Delta-G solvation = -3.228525 kcal Electronic energy + Delta-G solvation = -16519.644503 eV Core-core repulsion = 14001.091314 eV Total energy + Delta-G solvation = -2518.553189 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82653 -37.72038 -35.87202 -34.37937 -31.64140 -30.01594 -27.95319 -26.90630 -25.17254 -24.12120 -22.56483 -20.75633 -19.93574 -18.56121 -17.89371 -16.68388 -16.42087 -16.39681 -16.04396 -15.37346 -14.75051 -14.66385 -14.33013 -13.69412 -13.50885 -13.39435 -13.28379 -13.17923 -12.94805 -12.81670 -12.66616 -12.42140 -12.16778 -11.84643 -11.77465 -11.50825 -11.42151 -11.37839 -11.22951 -10.56829 -9.51622 -9.33775 -9.20901 -8.20098 -6.31554 0.14587 0.78975 1.24982 1.40271 1.40744 1.54002 1.89972 2.40506 3.13551 3.26368 3.67206 4.07941 4.18273 4.29985 4.38640 4.51022 4.52382 4.63909 4.69259 4.76301 4.85525 4.87554 5.06680 5.10398 5.12192 5.24110 5.26806 5.41687 5.44097 5.50188 5.56456 5.62799 5.67482 5.79533 6.12257 6.25831 6.46629 6.85946 7.37810 8.92307 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.004671 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.146012 B = 5992.532756 C = 6299.177767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.138 4.138 4 C 0.160 3.840 5 H 0.056 0.944 6 N -0.686 5.686 7 C 0.087 3.913 8 C 0.035 3.965 9 C -0.543 4.543 10 H 0.060 0.940 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.183 4.183 18 C -0.139 4.139 19 C -0.140 4.140 20 C -0.228 4.228 21 S 0.107 5.893 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.336 0.664 30 H 0.018 0.982 31 H 0.061 0.939 32 H -0.006 1.006 33 H -0.012 1.012 34 H 0.263 0.737 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 19.519 -6.795 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.196 4.196 4 C 0.049 3.951 5 H 0.074 0.926 6 N -0.317 5.317 7 C -0.042 4.042 8 C -0.002 4.002 9 C -0.581 4.581 10 H 0.078 0.922 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.301 4.301 18 C -0.170 4.170 19 C -0.170 4.170 20 C -0.364 4.364 21 S 0.371 5.629 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.012 0.988 33 H 0.007 0.993 34 H 0.072 0.928 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.943 18.602 -5.889 19.609 hybrid contribution 2.195 -0.299 -0.574 2.288 sum 0.252 18.304 -6.463 19.413 Atomic orbital electron populations 1.21839 0.94853 1.01651 1.01577 1.21057 0.96853 0.96230 0.95964 1.21794 1.00976 0.94523 1.02325 1.20096 0.96624 0.87261 0.91080 0.92608 1.60625 1.49545 1.01374 1.20152 1.21800 0.92216 0.93169 0.96970 1.18875 0.95345 0.91093 0.94911 1.21635 1.05797 0.95680 1.35025 0.92154 1.25966 0.97083 0.99754 0.96860 1.70121 1.25148 1.14735 1.47190 0.85379 0.78933 0.78394 0.78201 1.18525 1.20368 1.20351 1.24530 0.98197 1.05364 1.01975 1.20343 1.01955 0.98964 0.95763 1.20362 0.94088 1.03100 0.99433 1.26093 1.01623 1.04215 1.04421 1.84758 1.13326 1.43917 1.20904 0.92014 0.93564 0.92495 0.92145 0.91768 0.92353 0.92231 0.84583 0.96333 0.92080 0.98753 0.99326 0.92773 0.83407 0.82167 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.43 71.98 0.61 -3.30 16 2 C -0.08 -2.21 2.84 -10.80 -0.03 -2.25 16 3 C -0.14 -2.93 8.95 71.98 0.64 -2.29 16 4 C 0.16 4.67 2.27 44.17 0.10 4.77 16 5 H 0.06 1.63 7.81 -2.39 -0.02 1.61 16 6 N -0.69 -24.84 5.39 -495.45 -2.67 -27.51 16 7 C 0.09 3.72 5.39 86.30 0.47 4.18 16 8 C 0.04 1.91 5.27 29.85 0.16 2.07 16 9 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 0.07 5.46 84.66 0.46 0.54 16 12 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 13 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.18 -4.67 3.65 24.59 0.09 -4.58 16 18 C -0.14 -2.99 9.22 21.22 0.20 -2.80 16 19 C -0.14 -2.60 10.18 21.22 0.22 -2.38 16 20 C -0.23 -4.41 11.23 66.72 0.75 -3.66 16 21 S 0.11 2.65 20.40 -56.49 -1.15 1.50 16 22 H 0.06 1.60 5.44 -2.42 -0.01 1.59 16 23 H 0.05 1.52 7.64 -2.39 -0.02 1.50 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.83 7.47 -2.39 -0.02 1.81 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.23 6.62 -2.39 -0.02 1.21 16 29 H 0.34 12.33 8.13 -89.70 -0.73 11.60 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 2.58 7.43 -2.38 -0.02 2.56 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -64.18 311.54 2.69 -61.49 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.31 Total: 15.97 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 3.89 Total: -40.83 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.38 Total: -84.82 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.15 Total: 1.50 kcal Total: -64.18 2.69 -61.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042226572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.262 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds