Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46972 * 2 1 4 4 C 1.46898 * 110.99869 * 193.95168 * 3 2 1 5 5 C 1.50699 * 109.46933 * 66.05054 * 4 3 2 6 6 H 1.07995 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99848 * 179.97438 * 5 4 3 8 8 N 1.31522 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46898 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47285 * 120.00352 * 9 7 5 12 12 H 1.48501 * 109.47201 * 240.00434 * 9 7 5 13 13 C 1.39678 * 110.99767 * 70.00254 * 3 2 1 14 14 C 1.38936 * 120.07486 * 64.22364 * 13 3 2 15 15 C 1.38084 * 119.92111 * 180.27239 * 14 13 3 16 16 C 1.38308 * 120.07704 * 359.73176 * 15 14 13 17 17 C 1.38267 * 120.14719 * 359.97438 * 16 15 14 18 18 C 1.38118 * 120.07697 * 0.04294 * 17 16 15 19 19 C 1.50703 * 120.03825 * 179.97438 * 18 17 16 20 20 Cl 1.80300 * 109.47128 * 90.00146 * 19 18 17 21 21 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47258 * 299.99872 * 1 2 3 23 23 H 1.09004 * 109.46854 * 59.99952 * 1 2 3 24 24 H 1.08997 * 109.47235 * 240.00649 * 2 1 3 25 25 H 1.08997 * 109.47504 * 120.00220 * 2 1 3 26 26 H 1.09001 * 109.46950 * 186.04784 * 4 3 2 27 27 H 1.08998 * 109.47729 * 306.04836 * 4 3 2 28 28 H 0.96993 * 119.99772 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.04011 * 0.02562 * 14 13 3 30 30 H 1.08003 * 119.96106 * 179.74900 * 15 14 13 31 31 H 1.07997 * 119.92475 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.96041 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47152 * 329.99974 * 19 18 17 34 34 H 1.09001 * 109.46980 * 210.00074 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3307 5 6 3.6535 0.9855 -1.7537 6 1 2.8052 0.6884 -2.3524 7 6 4.9227 0.9513 -2.2913 8 7 5.9558 1.3127 -1.5620 9 14 5.1751 0.3902 -4.0551 10 1 3.8630 0.0394 -4.6555 11 1 5.8004 1.4858 -4.8384 12 1 6.0626 -0.8004 -4.0736 13 6 1.7660 2.0055 1.2254 14 6 2.3757 1.5369 2.3825 15 6 2.1183 2.1492 3.5931 16 6 1.2591 3.2313 3.6538 17 6 0.6554 3.7040 2.5032 18 6 0.9081 3.0960 1.2890 19 6 0.2492 3.6116 0.0355 20 17 1.2959 4.8707 -0.7193 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8112 2.4600 -0.2191 27 1 4.0028 0.7816 0.3416 28 1 6.8486 1.2890 -1.9404 29 1 3.0470 0.6922 2.3358 30 1 2.5888 1.7829 4.4937 31 1 1.0592 3.7081 4.6020 32 1 -0.0147 4.5494 2.5539 33 1 -0.7186 4.0460 0.2861 34 1 0.1077 2.7888 -0.6653 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = 13.709132 kcal Electronic energy + Delta-G solvation = -16809.521946 eV Core-core repulsion = 14153.826428 eV Total energy + Delta-G solvation = -2655.695518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60532 -36.26066 -35.38913 -32.68203 -31.98322 -30.60407 -29.17099 -26.68187 -25.55551 -22.84420 -22.44479 -21.00795 -19.74551 -16.73748 -16.04890 -15.25403 -15.13237 -14.89372 -14.17875 -13.94778 -13.57383 -13.22515 -13.04016 -12.88325 -12.32451 -12.21027 -11.88063 -11.53406 -11.21358 -11.12145 -10.97901 -10.67916 -10.55059 -10.31887 -9.99284 -9.94335 -9.78131 -9.25438 -8.52164 -8.44890 -8.14903 -7.46358 -6.02833 -4.04132 1.48314 1.70116 2.99250 3.31272 3.39032 3.43148 4.15223 4.41255 4.74353 4.99310 5.09331 5.32286 5.33201 5.41116 5.56897 5.69898 5.78114 5.79966 5.93007 5.99653 6.17393 6.30339 6.33943 6.56389 6.67272 6.71890 6.76838 6.92678 7.13078 7.30091 7.39189 7.82334 8.05394 8.15032 8.57339 9.02183 9.59571 11.07962 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.007542 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.919050 B = 3711.627118 C = 4067.650729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 N -0.508 5.508 4 C 0.203 3.797 5 C -0.505 4.505 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.141 3.859 14 C -0.153 4.153 15 C -0.105 4.105 16 C -0.141 4.141 17 C -0.101 4.101 18 C -0.096 4.096 19 C 0.024 3.976 20 Cl -0.178 7.178 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.024 0.976 26 H 0.034 0.966 27 H -0.006 1.006 28 H 0.261 0.739 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 1.829 7.755 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 N -0.230 5.230 4 C 0.080 3.920 5 C -0.544 4.544 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.212 1.212 13 C 0.046 3.954 14 C -0.173 4.173 15 C -0.124 4.124 16 C -0.159 4.159 17 C -0.120 4.120 18 C -0.097 4.097 19 C -0.038 4.038 20 Cl -0.151 7.151 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.486 2.181 7.276 13.770 hybrid contribution 0.936 -0.622 -0.251 1.151 sum -10.550 1.559 7.025 12.770 Atomic orbital electron populations 1.21820 0.96517 1.00557 1.01524 1.22058 0.94148 0.88983 1.01510 1.59945 1.22639 1.15927 1.24472 1.19751 0.78658 0.97379 0.96178 1.21130 0.92660 1.43630 0.96974 0.91686 1.24969 0.95975 0.95602 0.97939 1.69974 0.98866 1.48269 1.36443 0.86460 0.78169 0.78179 0.84725 1.19631 1.21024 1.21184 1.18986 0.92966 0.93615 0.89815 1.21812 1.00828 1.01400 0.93302 1.21018 0.97890 0.96138 0.97386 1.20957 0.99100 0.97904 0.97952 1.20885 0.99954 0.99110 0.92024 1.19649 0.99730 0.96475 0.93894 1.22915 0.92595 0.93410 0.94917 1.98723 1.72909 1.58896 1.84570 0.93088 0.93633 0.92262 0.89068 0.95794 0.94766 0.98834 0.92981 0.86112 0.86617 0.86509 0.86283 0.89783 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.81 37.16 0.36 -1.83 16 2 C 0.06 1.10 5.45 -3.82 -0.02 1.08 16 3 N -0.51 -10.51 3.40 -172.48 -0.59 -11.10 16 4 C 0.20 5.20 4.30 -4.98 -0.02 5.18 16 5 C -0.51 -13.87 8.31 -34.44 -0.29 -14.16 16 6 H 0.06 1.76 7.23 -52.49 -0.38 1.38 16 7 C 0.06 1.59 5.46 -17.81 -0.10 1.50 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.14 2.63 3.72 -83.78 -0.31 2.32 16 14 C -0.15 -2.69 8.53 -39.38 -0.34 -3.03 16 15 C -0.11 -1.55 10.04 -39.61 -0.40 -1.95 16 16 C -0.14 -1.90 10.04 -39.55 -0.40 -2.30 16 17 C -0.10 -1.42 9.70 -39.61 -0.38 -1.81 16 18 C -0.10 -1.58 5.28 -104.42 -0.55 -2.13 16 19 C 0.02 0.37 6.54 36.01 0.24 0.61 16 20 Cl -0.18 -3.17 29.13 -51.86 -1.51 -4.68 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.04 0.66 7.52 -51.93 -0.39 0.27 16 23 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 24 H 0.09 1.84 6.60 -51.93 -0.34 1.50 16 25 H 0.02 0.44 7.09 -51.93 -0.37 0.07 16 26 H 0.03 0.98 8.06 -51.93 -0.42 0.56 16 27 H -0.01 -0.17 7.46 -51.93 -0.39 -0.55 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.12 2.19 7.14 -52.49 -0.37 1.82 16 30 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.11 1.82 7.07 -51.93 -0.37 1.45 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -29.59 298.62 -8.77 -38.36 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.68 Total: -1.30 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.20 Total: -16.51 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.15 Total: -36.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -1.51 Total: -4.68 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.59 -8.77 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.066 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds