Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46972 * 2 1 4 4 C 1.46898 * 110.99869 * 193.95168 * 3 2 1 5 5 C 1.50699 * 109.46933 * 66.05054 * 4 3 2 6 6 H 1.07995 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99848 * 179.97438 * 5 4 3 8 8 N 1.31522 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46898 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47285 * 120.00352 * 9 7 5 12 12 H 1.48501 * 109.47201 * 240.00434 * 9 7 5 13 13 C 1.39678 * 110.99767 * 70.00254 * 3 2 1 14 14 C 1.38936 * 120.07486 * 64.22364 * 13 3 2 15 15 C 1.38084 * 119.92111 * 180.27239 * 14 13 3 16 16 C 1.38308 * 120.07704 * 359.73176 * 15 14 13 17 17 C 1.38267 * 120.14719 * 359.97438 * 16 15 14 18 18 C 1.38118 * 120.07697 * 0.04294 * 17 16 15 19 19 C 1.50703 * 120.03825 * 179.97438 * 18 17 16 20 20 Cl 1.80300 * 109.47128 * 90.00146 * 19 18 17 21 21 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47258 * 299.99872 * 1 2 3 23 23 H 1.09004 * 109.46854 * 59.99952 * 1 2 3 24 24 H 1.08997 * 109.47235 * 240.00649 * 2 1 3 25 25 H 1.08997 * 109.47504 * 120.00220 * 2 1 3 26 26 H 1.09001 * 109.46950 * 186.04784 * 4 3 2 27 27 H 1.08998 * 109.47729 * 306.04836 * 4 3 2 28 28 H 0.96993 * 119.99772 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.04011 * 0.02562 * 14 13 3 30 30 H 1.08003 * 119.96106 * 179.74900 * 15 14 13 31 31 H 1.07997 * 119.92475 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.96041 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47152 * 329.99974 * 19 18 17 34 34 H 1.09001 * 109.46980 * 210.00074 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3307 5 6 3.6535 0.9855 -1.7537 6 1 2.8052 0.6884 -2.3524 7 6 4.9227 0.9513 -2.2913 8 7 5.9558 1.3127 -1.5620 9 14 5.1751 0.3902 -4.0551 10 1 3.8630 0.0394 -4.6555 11 1 5.8004 1.4858 -4.8384 12 1 6.0626 -0.8004 -4.0736 13 6 1.7660 2.0055 1.2254 14 6 2.3757 1.5369 2.3825 15 6 2.1183 2.1492 3.5931 16 6 1.2591 3.2313 3.6538 17 6 0.6554 3.7040 2.5032 18 6 0.9081 3.0960 1.2890 19 6 0.2492 3.6116 0.0355 20 17 1.2959 4.8707 -0.7193 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8112 2.4600 -0.2191 27 1 4.0028 0.7816 0.3416 28 1 6.8486 1.2890 -1.9404 29 1 3.0470 0.6922 2.3358 30 1 2.5888 1.7829 4.4937 31 1 1.0592 3.7081 4.6020 32 1 -0.0147 4.5494 2.5539 33 1 -0.7186 4.0460 0.2861 34 1 0.1077 2.7888 -0.6653 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = -2.273169 kcal Electronic energy + Delta-G solvation = -16810.214991 eV Core-core repulsion = 14153.826428 eV Total energy + Delta-G solvation = -2656.388563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95044 -37.74131 -36.69447 -34.77226 -33.22558 -31.96405 -30.77047 -28.31463 -27.00002 -24.39620 -24.14244 -22.30215 -21.15494 -18.61796 -17.58060 -16.87567 -16.59175 -16.30002 -15.87826 -15.24191 -14.95579 -14.66638 -14.38415 -14.22223 -14.02938 -13.94368 -13.15896 -12.93884 -12.89191 -12.66243 -12.45286 -12.35819 -12.17243 -11.93709 -11.79867 -11.30247 -11.27733 -11.09152 -10.62467 -9.74466 -9.44242 -9.15419 -8.20104 -6.29561 0.25012 0.45734 1.39473 1.41057 1.53902 1.76143 2.39677 2.92955 3.12378 3.20892 3.79002 3.94206 4.18412 4.20573 4.33872 4.42745 4.52635 4.58141 4.68435 4.74673 4.87605 5.01027 5.08616 5.13351 5.16674 5.29615 5.38623 5.51049 5.58160 5.63724 5.73472 6.01802 6.11226 6.24159 6.83768 6.85530 7.39400 8.91215 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.007542 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.919050 B = 3711.627118 C = 4067.650729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 N -0.503 5.503 4 C 0.228 3.772 5 C -0.515 4.515 6 H 0.066 0.934 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.107 3.893 14 C -0.177 4.177 15 C -0.105 4.105 16 C -0.129 4.129 17 C -0.095 4.095 18 C -0.105 4.105 19 C 0.029 3.971 20 Cl -0.204 7.204 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.019 0.981 26 H -0.006 1.006 27 H -0.038 1.038 28 H 0.263 0.737 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.125 0.875 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 2.367 8.494 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 N -0.225 5.225 4 C 0.103 3.897 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.204 1.204 13 C 0.012 3.988 14 C -0.197 4.197 15 C -0.124 4.124 16 C -0.147 4.147 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.033 4.033 20 Cl -0.178 7.178 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.037 0.963 26 H 0.012 0.988 27 H -0.020 1.020 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.143 0.857 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.636 2.711 8.026 16.053 hybrid contribution 1.551 -0.778 -0.331 1.766 sum -12.085 1.934 7.695 14.457 Atomic orbital electron populations 1.21687 0.93115 1.02207 1.01868 1.22092 0.96848 0.87809 1.00112 1.59805 1.18983 1.17143 1.26576 1.19219 0.81675 0.93864 0.94930 1.21435 0.92849 1.43248 0.97819 0.91568 1.25892 0.95686 0.95618 1.02437 1.70110 0.99371 1.49515 1.38523 0.85367 0.78498 0.77754 0.79215 1.18434 1.20796 1.20406 1.19127 0.95337 0.95304 0.89015 1.21778 1.01457 1.01793 0.94671 1.21325 0.97875 0.96212 0.96939 1.21434 0.97143 0.96609 0.99490 1.21312 0.99688 0.99298 0.91039 1.19817 0.99625 0.95787 0.95413 1.23089 0.93505 0.92645 0.94045 1.98723 1.74009 1.59935 1.85115 0.90759 0.92945 0.92112 0.91375 0.96254 0.98773 1.02021 0.92843 0.88379 0.84174 0.82514 0.82824 0.85722 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.81 71.98 0.71 -3.08 16 2 C 0.06 2.21 5.45 86.30 0.47 2.68 16 3 N -0.50 -21.62 3.40 -699.59 -2.38 -24.00 16 4 C 0.23 12.37 4.30 85.56 0.37 12.73 16 5 C -0.52 -29.34 8.31 25.60 0.21 -29.13 16 6 H 0.07 3.67 7.23 -2.91 -0.02 3.65 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 C 0.11 4.02 3.72 38.21 0.14 4.16 16 14 C -0.18 -6.35 8.53 22.40 0.19 -6.15 16 15 C -0.10 -2.89 10.04 22.25 0.22 -2.67 16 16 C -0.13 -2.98 10.04 22.29 0.22 -2.75 16 17 C -0.09 -2.33 9.70 22.25 0.22 -2.12 16 18 C -0.11 -3.28 5.28 -19.74 -0.10 -3.39 16 19 C 0.03 0.85 6.54 71.24 0.47 1.31 16 20 Cl -0.20 -7.19 29.13 -2.72 -0.08 -7.26 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 22 H 0.05 1.44 7.52 -2.39 -0.02 1.43 16 23 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 24 H 0.07 2.87 6.60 -2.39 -0.02 2.85 16 25 H 0.02 0.74 7.09 -2.39 -0.02 0.72 16 26 H -0.01 -0.36 8.06 -2.39 -0.02 -0.38 16 27 H -0.04 -2.24 7.46 -2.39 -0.02 -2.26 16 28 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.10 3.85 7.14 -2.91 -0.02 3.83 16 30 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.12 2.56 8.09 -2.39 -0.02 2.54 16 34 H 0.10 3.13 7.07 -2.39 -0.02 3.11 16 Total: -1.00 -67.10 298.62 4.51 -62.59 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.08 Total: 6.62 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 3.58 Total: -27.85 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.09 Total: -81.13 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 17 Polarization: -7.19 SS G_CDS: -0.08 Total: -7.26 kcal Total: -67.10 4.51 -62.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.320 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds