Wall clock time and date at job start Mon Mar 30 2020 06:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46953 * 2 1 4 4 H 1.09002 * 109.47121 * 55.43041 * 3 2 1 5 5 C 1.50704 * 109.47214 * 175.42635 * 3 2 1 6 6 H 1.08000 * 119.99554 * 114.55215 * 5 3 2 7 7 C 1.37877 * 120.00222 * 294.55543 * 5 3 2 8 8 N 1.31513 * 120.00040 * 350.63081 * 7 5 3 9 9 Si 1.86801 * 119.99865 * 170.62646 * 7 5 3 10 10 H 1.48502 * 109.47082 * 60.00356 * 9 7 5 11 11 H 1.48503 * 109.47132 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47189 * 300.00053 * 9 7 5 13 13 N 1.46496 * 109.47552 * 295.43122 * 3 2 1 14 14 N 1.40088 * 126.03387 * 299.69338 * 13 3 2 15 15 C 1.30839 * 108.20647 * 179.85223 * 14 13 3 16 16 C 1.50696 * 125.89867 * 180.16612 * 15 14 13 17 17 C 1.39875 * 108.20002 * 0.40087 * 15 14 13 18 18 N 1.48018 * 126.03836 * 179.76470 * 17 15 14 19 19 O 1.21802 * 120.00111 * 269.97132 * 18 17 15 20 20 O 1.21800 * 119.99928 * 89.97778 * 18 17 15 21 21 C 1.34943 * 126.04052 * 119.99701 * 13 3 2 22 22 C 1.50700 * 126.12978 * 359.97438 * 21 13 3 23 23 H 1.09005 * 109.46862 * 185.11267 * 1 2 3 24 24 H 1.08998 * 109.47603 * 305.11670 * 1 2 3 25 25 H 1.08999 * 109.46880 * 65.12164 * 1 2 3 26 26 H 1.09000 * 109.47384 * 240.00077 * 2 1 3 27 27 H 1.08999 * 109.47033 * 119.99974 * 2 1 3 28 28 H 0.96995 * 120.00191 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47221 * 270.27346 * 16 15 14 30 30 H 1.08991 * 109.47440 * 30.27946 * 16 15 14 31 31 H 1.09010 * 109.46830 * 150.27876 * 16 15 14 32 32 H 1.08998 * 109.47197 * 89.99606 * 22 21 13 33 33 H 1.08996 * 109.47717 * 210.00430 * 22 21 13 34 34 H 1.09003 * 109.46981 * 330.00311 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6112 1.9794 0.8462 5 6 3.5427 1.4441 0.1133 6 1 4.1454 1.8105 -0.7045 7 6 4.1480 0.9776 1.2609 8 7 3.4221 0.7049 2.3230 9 14 5.9994 0.7329 1.3070 10 1 6.6766 2.0283 1.0453 11 1 6.3988 0.2276 2.6450 12 1 6.3946 -0.2511 0.2675 13 7 1.6435 2.1007 -1.2473 14 7 2.0064 1.7027 -2.5405 15 6 1.4596 2.5320 -3.3920 16 6 1.5881 2.4705 -4.8922 17 6 0.7396 3.4888 -2.6691 18 7 -0.0286 4.6169 -3.2421 19 8 0.5145 5.6910 -3.4288 20 8 -1.2038 4.4710 -3.5268 21 6 0.8691 3.2007 -1.3532 22 6 0.2578 3.9704 -0.2109 23 1 -0.3633 -1.0236 0.0916 24 1 -0.3634 0.5911 0.8406 25 1 -0.3633 0.4323 -0.9323 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8480 0.3771 3.1305 29 1 2.4562 3.0498 -5.2066 30 1 1.7110 1.4334 -5.2041 31 1 0.6899 2.8839 -5.3511 32 1 0.9477 4.7499 0.1124 33 1 -0.6770 4.4253 -0.5382 34 1 0.0607 3.2925 0.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043598215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:28 Heat of formation + Delta-G solvation = 37.176380 kcal Electronic energy + Delta-G solvation = -19225.484921 eV Core-core repulsion = 16162.390606 eV Total energy + Delta-G solvation = -3063.094315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.45101 -42.34519 -37.54535 -37.34324 -34.69432 -33.87315 -32.85514 -30.22145 -29.64061 -28.09911 -26.45420 -24.99001 -22.73325 -22.09101 -20.84837 -19.89078 -19.58665 -18.49486 -18.11699 -17.48321 -16.64172 -16.36028 -15.18105 -14.93997 -14.74619 -14.55263 -14.43191 -13.75533 -13.66927 -13.53569 -13.51244 -13.26396 -13.01740 -12.76564 -12.72458 -12.57441 -12.25062 -12.23008 -12.11588 -11.90496 -11.78707 -11.48182 -10.67981 -10.41289 -10.10923 -8.39254 -6.50413 -0.50981 0.31201 0.43733 1.04960 1.35573 1.38286 1.43778 1.52456 2.30107 2.92265 3.14831 3.31437 3.63538 3.88766 4.19769 4.24325 4.32174 4.35895 4.42249 4.49353 4.52194 4.60150 4.69586 4.84036 4.96685 5.02999 5.06104 5.26694 5.36354 5.48587 5.51229 5.81187 5.83958 6.39784 6.55565 6.59018 7.18183 8.67428 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.006739 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.913862 B = 4153.873380 C = 4351.523799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.285 3.715 4 H 0.069 0.931 5 C -0.555 4.555 6 H 0.048 0.952 7 C 0.040 3.960 8 N -0.899 5.899 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.275 1.275 13 N -0.307 5.307 14 N -0.287 5.287 15 C 0.100 3.900 16 C -0.077 4.077 17 C -0.224 4.224 18 N 0.066 4.934 19 O -0.160 6.160 20 O -0.148 6.148 21 C 0.146 3.854 22 C -0.105 4.105 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.274 0.726 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 2.481 -5.466 8.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.188 3.812 4 H 0.087 0.913 5 C -0.593 4.593 6 H 0.066 0.934 7 C -0.164 4.164 8 N -0.536 5.536 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.197 1.197 12 H -0.200 1.200 13 N -0.085 5.085 14 N -0.110 5.110 15 C -0.067 4.067 16 C -0.135 4.135 17 C -0.318 4.318 18 N 0.595 4.405 19 O -0.380 6.380 20 O -0.371 6.371 21 C 0.009 3.991 22 C -0.162 4.162 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.262 0.671 -4.653 6.346 hybrid contribution 0.411 0.779 0.002 0.880 sum -3.852 1.450 -4.651 6.210 Atomic orbital electron populations 1.21745 0.95488 1.02125 1.00422 1.21702 0.95076 0.96821 1.01721 1.19468 0.95495 0.90917 0.75345 0.91332 1.21198 0.90619 1.45458 1.01999 0.93415 1.25440 1.02614 0.94077 0.94221 1.69941 1.37621 1.43447 1.02584 0.85631 0.79894 0.78646 0.77699 1.20109 1.19719 1.19992 1.49480 1.33062 1.18869 1.07066 1.77553 1.22600 1.23204 0.87610 1.22685 0.94224 0.90724 0.99082 1.20440 1.04164 1.05690 0.83213 1.20441 1.18039 0.99912 0.93438 1.42520 1.00018 1.00739 0.97202 1.94510 1.72624 1.13935 1.56969 1.94485 0.99946 1.89500 1.53209 1.21068 0.93232 0.89985 0.94771 1.20812 1.01399 0.99983 0.94046 0.91512 0.92387 0.94703 0.93910 0.90351 0.91637 0.88425 0.88183 0.89794 0.87899 0.88414 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.73 71.98 0.70 -4.19 16 2 C -0.11 -4.88 5.44 30.59 0.17 -4.71 16 3 C 0.29 12.95 2.28 44.25 0.10 13.05 16 4 H 0.07 3.17 6.62 -2.39 -0.02 3.16 16 5 C -0.55 -28.49 8.68 25.60 0.22 -28.26 16 6 H 0.05 2.61 7.83 -2.91 -0.02 2.58 16 7 C 0.04 1.98 5.16 84.65 0.44 2.42 16 8 N -0.90 -45.46 12.15 21.45 0.26 -45.20 16 9 Si 0.96 40.75 29.55 68.60 2.03 42.77 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.31 -12.95 2.79 -317.84 -0.89 -13.84 16 14 N -0.29 -12.09 12.42 -47.38 -0.59 -12.68 16 15 C 0.10 3.65 7.22 43.10 0.31 3.96 16 16 C -0.08 -2.03 10.44 71.23 0.74 -1.28 16 17 C -0.22 -8.22 6.60 36.10 0.24 -7.98 16 18 N 0.07 2.29 4.41 -47.12 -0.21 2.08 16 19 O -0.16 -5.65 19.26 18.88 0.36 -5.29 16 20 O -0.15 -5.02 19.25 18.89 0.36 -4.65 16 21 C 0.15 5.46 6.93 41.41 0.29 5.75 16 22 C -0.10 -3.09 9.92 71.24 0.71 -2.38 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.03 1.22 7.88 -2.39 -0.02 1.20 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 3.62 6.80 -2.39 -0.02 3.60 16 28 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.10 2.77 7.10 -2.39 -0.02 2.75 16 Total: -1.00 -55.86 303.23 6.35 -49.51 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.10 Total: 10.94 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.91 Total: -23.64 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.42 Total: -69.64 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.73 Total: -9.94 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -55.86 6.35 -49.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043598215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.683 kcal (2) G-P(sol) polarization free energy of solvation -55.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds