Wall clock time and date at job start Mon Mar 30 2020 07:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33392 * 125.20044 * 2 1 4 4 C 1.38426 * 114.91997 * 180.21164 * 3 2 1 5 5 C 1.50695 * 122.54449 * 179.76378 * 4 3 2 6 6 H 1.09001 * 109.47441 * 144.70881 * 5 4 3 7 7 C 1.53004 * 109.46846 * 264.71149 * 5 4 3 8 8 N 1.46901 * 109.46710 * 24.70739 * 5 4 3 9 9 C 1.46905 * 110.99875 * 152.77936 * 8 5 4 10 10 H 1.08999 * 109.47175 * 33.19170 * 9 8 5 11 11 C 1.52991 * 109.47550 * 153.19849 * 9 8 5 12 12 C 1.50704 * 109.46501 * 273.19444 * 9 8 5 13 13 H 1.07994 * 120.00720 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99651 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99863 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99752 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47242 * 90.00276 * 16 14 12 18 18 H 1.48500 * 109.46909 * 209.99837 * 16 14 12 19 19 H 1.48496 * 109.47532 * 330.00146 * 16 14 12 20 20 C 1.33396 * 114.91875 * 359.49050 * 4 3 2 21 21 C 1.50700 * 125.20202 * 180.28895 * 20 4 3 22 22 S 1.75880 * 125.20257 * 179.69349 * 2 1 3 23 23 H 1.09001 * 109.47531 * 180.28484 * 1 2 3 24 24 H 1.09006 * 109.47270 * 300.28542 * 1 2 3 25 25 H 1.08998 * 109.47702 * 60.28095 * 1 2 3 26 26 H 1.07992 * 122.54203 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47043 * 64.92121 * 7 5 4 28 28 H 1.09004 * 109.47067 * 184.91408 * 7 5 4 29 29 H 1.08997 * 109.47091 * 304.91696 * 7 5 4 30 30 H 1.00900 * 110.99896 * 276.72538 * 8 5 4 31 31 H 1.08995 * 109.47798 * 179.36864 * 11 9 8 32 32 H 1.09010 * 109.46911 * 299.36620 * 11 9 8 33 33 H 1.09001 * 109.47249 * 59.35899 * 11 9 8 34 34 H 0.97002 * 119.99660 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46775 * 90.00716 * 21 20 4 36 36 H 1.09000 * 109.47127 * 210.00143 * 21 20 4 37 37 H 1.08999 * 109.47396 * 330.00460 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0046 5 6 4.6622 1.9482 -0.0106 6 1 5.5267 1.6457 0.5804 7 6 5.1010 2.2291 -1.4492 8 7 4.0744 3.1637 0.5682 9 6 5.1100 4.0142 1.1701 10 1 6.0343 3.9196 0.6003 11 6 4.6466 5.4721 1.1523 12 6 5.3507 3.5811 2.5934 13 1 4.7909 2.7564 3.0090 14 6 6.2867 4.2371 3.3646 15 7 6.9688 5.2411 2.8584 16 14 6.5857 3.6999 5.1285 17 1 7.6514 2.6661 5.1573 18 1 7.0100 4.8707 5.9374 19 1 5.3335 3.1357 5.6932 20 6 3.9750 -0.4477 0.0024 21 6 5.3860 -0.9770 0.0056 22 16 2.5208 -1.4371 0.0077 23 1 -0.3634 -1.0276 0.0051 24 1 -0.3634 0.5183 0.8875 25 1 -0.3634 0.5094 -0.8924 26 1 1.8668 2.0895 -0.0004 27 1 4.2552 2.6150 -2.0183 28 1 5.9039 2.9663 -1.4468 29 1 5.4564 1.3062 -1.9074 30 1 3.5445 3.6735 -0.1228 31 1 5.4101 6.1017 1.6090 32 1 4.4831 5.7888 0.1221 33 1 3.7163 5.5646 1.7127 34 1 7.6275 5.7024 3.4009 35 1 5.7258 -1.0992 1.0340 36 1 5.4138 -1.9406 -0.5031 37 1 6.0390 -0.2740 -0.5118 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049507163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:43 Heat of formation + Delta-G solvation = 16.618785 kcal Electronic energy + Delta-G solvation = -16841.792494 eV Core-core repulsion = 14324.099949 eV Total energy + Delta-G solvation = -2517.692545 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -38.68717 -35.77040 -33.35696 -32.30396 -30.13849 -29.09947 -26.80967 -25.12385 -24.60895 -22.87217 -20.54134 -20.15942 -17.64918 -16.63750 -16.07391 -15.13580 -14.57308 -14.11968 -13.91223 -13.57213 -13.31495 -13.11304 -12.83355 -12.73366 -12.47370 -12.21303 -11.87928 -11.64846 -11.39165 -11.18806 -10.91706 -10.89087 -10.68345 -10.60931 -10.40259 -10.21907 -9.96351 -9.71360 -9.11395 -8.36726 -8.04026 -7.86814 -7.20270 -5.94860 -3.97819 1.36537 1.95550 2.30860 3.18499 3.33719 3.40262 3.45952 4.47322 5.07482 5.19327 5.31035 5.37745 5.38179 5.53081 5.62076 5.65092 5.75479 5.81056 5.86866 5.95836 6.09280 6.19462 6.27520 6.42585 6.48851 6.62936 6.77431 6.91929 6.98537 7.03354 7.08024 7.48819 7.77244 7.96203 8.32184 8.40382 8.77482 9.10714 9.67350 11.11395 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.006141 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.710829 B = 4558.408613 C = 4757.613061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.195 4.195 3 C -0.099 4.099 4 C -0.067 4.067 5 C 0.145 3.855 6 H 0.091 0.909 7 C -0.172 4.172 8 N -0.676 5.676 9 C 0.213 3.787 10 H 0.003 0.997 11 C -0.143 4.143 12 C -0.490 4.490 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.187 4.187 21 C -0.079 4.079 22 S 0.051 5.949 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.316 0.684 31 H 0.089 0.911 32 H 0.005 0.995 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -9.937 -8.095 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.312 4.312 3 C -0.129 4.129 4 C -0.079 4.079 5 C 0.031 3.969 6 H 0.109 0.891 7 C -0.231 4.231 8 N -0.306 5.306 9 C 0.105 3.895 10 H 0.021 0.979 11 C -0.202 4.202 12 C -0.528 4.528 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.304 4.304 21 C -0.138 4.138 22 S 0.315 5.685 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.159 0.841 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.024 0.976 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.847 -11.667 -7.412 15.895 hybrid contribution 0.915 1.647 0.271 1.904 sum -6.932 -10.020 -7.141 14.123 Atomic orbital electron populations 1.20235 0.88415 1.02076 1.02632 1.24244 0.99294 0.95355 1.12287 1.19893 0.92457 0.99145 1.01433 1.18958 0.94974 0.93508 1.00507 1.20096 0.94090 0.89664 0.93021 0.89070 1.22467 1.01316 1.01434 0.97873 1.60722 1.27841 1.07508 1.34528 1.19165 0.87584 0.88318 0.94385 0.97913 1.21952 1.01549 1.00056 0.96620 1.21208 1.19500 1.15704 0.96431 0.92090 1.24947 0.96076 0.95212 0.98331 1.69880 1.25369 1.22069 1.36562 0.86570 0.78410 0.77956 0.84920 1.20897 1.21385 1.19925 1.24045 0.98258 0.95695 1.12399 1.20299 0.90270 1.00503 1.02723 1.83841 0.97611 1.10688 1.76382 0.92103 0.90846 0.91084 0.84113 0.93049 0.92257 0.92890 0.86744 0.89259 0.97643 0.94703 0.93159 0.90851 0.92058 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.38 36.00 0.37 -0.46 16 2 C -0.20 -2.85 6.51 -36.00 -0.23 -3.08 16 3 C -0.10 -1.63 9.34 -41.21 -0.38 -2.01 16 4 C -0.07 -1.17 4.96 -106.25 -0.53 -1.70 16 5 C 0.14 2.70 2.06 -68.86 -0.14 2.56 16 6 H 0.09 1.93 7.05 -51.93 -0.37 1.56 16 7 C -0.17 -2.76 9.08 37.16 0.34 -2.42 16 8 N -0.68 -14.13 5.18 -102.17 -0.53 -14.66 16 9 C 0.21 5.27 2.41 -68.86 -0.17 5.10 16 10 H 0.00 0.09 7.32 -51.93 -0.38 -0.29 16 11 C -0.14 -3.44 8.95 37.15 0.33 -3.11 16 12 C -0.49 -13.58 8.60 -34.43 -0.30 -13.87 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 15 N -0.90 -25.68 11.32 55.43 0.63 -25.06 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.19 -2.97 6.51 -36.00 -0.23 -3.20 16 21 C -0.08 -1.08 9.78 36.01 0.35 -0.73 16 22 S 0.05 0.72 23.31 -107.50 -2.51 -1.78 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.14 2.28 7.49 -52.49 -0.39 1.89 16 27 H 0.05 0.77 8.04 -51.93 -0.42 0.35 16 28 H 0.06 1.00 7.67 -51.93 -0.40 0.60 16 29 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 30 H 0.32 6.01 7.78 -39.29 -0.31 5.71 16 31 H 0.09 2.37 6.05 -51.93 -0.31 2.05 16 32 H 0.00 0.10 8.13 -51.92 -0.42 -0.32 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.03 6.58 -51.93 -0.34 0.69 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -28.83 313.02 -9.20 -38.03 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.80 Total: 3.51 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -0.68 Total: -21.49 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.10 Total: -39.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.83 -9.20 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.646 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds