Wall clock time and date at job start Mon Mar 30 2020 07:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33392 * 125.20044 * 2 1 4 4 C 1.38426 * 114.91997 * 180.21164 * 3 2 1 5 5 C 1.50695 * 122.54449 * 179.76378 * 4 3 2 6 6 H 1.09001 * 109.47441 * 144.70881 * 5 4 3 7 7 C 1.53004 * 109.46846 * 264.71149 * 5 4 3 8 8 N 1.46901 * 109.46710 * 24.70739 * 5 4 3 9 9 C 1.46905 * 110.99875 * 152.77936 * 8 5 4 10 10 H 1.08999 * 109.47175 * 33.19170 * 9 8 5 11 11 C 1.52991 * 109.47550 * 153.19849 * 9 8 5 12 12 C 1.50704 * 109.46501 * 273.19444 * 9 8 5 13 13 H 1.07994 * 120.00720 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99651 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99863 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99752 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47242 * 90.00276 * 16 14 12 18 18 H 1.48500 * 109.46909 * 209.99837 * 16 14 12 19 19 H 1.48496 * 109.47532 * 330.00146 * 16 14 12 20 20 C 1.33396 * 114.91875 * 359.49050 * 4 3 2 21 21 C 1.50700 * 125.20202 * 180.28895 * 20 4 3 22 22 S 1.75880 * 125.20257 * 179.69349 * 2 1 3 23 23 H 1.09001 * 109.47531 * 180.28484 * 1 2 3 24 24 H 1.09006 * 109.47270 * 300.28542 * 1 2 3 25 25 H 1.08998 * 109.47702 * 60.28095 * 1 2 3 26 26 H 1.07992 * 122.54203 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47043 * 64.92121 * 7 5 4 28 28 H 1.09004 * 109.47067 * 184.91408 * 7 5 4 29 29 H 1.08997 * 109.47091 * 304.91696 * 7 5 4 30 30 H 1.00900 * 110.99896 * 276.72538 * 8 5 4 31 31 H 1.08995 * 109.47798 * 179.36864 * 11 9 8 32 32 H 1.09010 * 109.46911 * 299.36620 * 11 9 8 33 33 H 1.09001 * 109.47249 * 59.35899 * 11 9 8 34 34 H 0.97002 * 119.99660 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46775 * 90.00716 * 21 20 4 36 36 H 1.09000 * 109.47127 * 210.00143 * 21 20 4 37 37 H 1.08999 * 109.47396 * 330.00460 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0046 5 6 4.6622 1.9482 -0.0106 6 1 5.5267 1.6457 0.5804 7 6 5.1010 2.2291 -1.4492 8 7 4.0744 3.1637 0.5682 9 6 5.1100 4.0142 1.1701 10 1 6.0343 3.9196 0.6003 11 6 4.6466 5.4721 1.1523 12 6 5.3507 3.5811 2.5934 13 1 4.7909 2.7564 3.0090 14 6 6.2867 4.2371 3.3646 15 7 6.9688 5.2411 2.8584 16 14 6.5857 3.6999 5.1285 17 1 7.6514 2.6661 5.1573 18 1 7.0100 4.8707 5.9374 19 1 5.3335 3.1357 5.6932 20 6 3.9750 -0.4477 0.0024 21 6 5.3860 -0.9770 0.0056 22 16 2.5208 -1.4371 0.0077 23 1 -0.3634 -1.0276 0.0051 24 1 -0.3634 0.5183 0.8875 25 1 -0.3634 0.5094 -0.8924 26 1 1.8668 2.0895 -0.0004 27 1 4.2552 2.6150 -2.0183 28 1 5.9039 2.9663 -1.4468 29 1 5.4564 1.3062 -1.9074 30 1 3.5445 3.6735 -0.1228 31 1 5.4101 6.1017 1.6090 32 1 4.4831 5.7888 0.1221 33 1 3.7163 5.5646 1.7127 34 1 7.6275 5.7024 3.4009 35 1 5.7258 -1.0992 1.0340 36 1 5.4138 -1.9406 -0.5031 37 1 6.0390 -0.2740 -0.5118 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049507163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:42 Heat of formation + Delta-G solvation = 0.832655 kcal Electronic energy + Delta-G solvation = -16842.477032 eV Core-core repulsion = 14324.099949 eV Total energy + Delta-G solvation = -2518.377083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01679 -37.42599 -34.95235 -33.82455 -31.85216 -30.14653 -28.47563 -27.24189 -25.77920 -24.19283 -22.15826 -21.76324 -18.92394 -18.24807 -17.79613 -16.83712 -16.22862 -15.57650 -15.37481 -15.01590 -14.71523 -14.41068 -14.12377 -13.96698 -13.71537 -13.54916 -13.35472 -13.07919 -12.86143 -12.80621 -12.63457 -12.46725 -12.21933 -12.14297 -11.99688 -11.92177 -11.81377 -11.30068 -11.11849 -10.49640 -9.19647 -9.09995 -8.91816 -8.07578 -6.18188 0.17214 0.80664 1.11861 1.39324 1.40801 1.51556 1.92394 2.43533 3.18774 3.67722 3.99466 4.07109 4.26111 4.39497 4.46053 4.50328 4.57318 4.71510 4.80255 4.80723 4.86169 4.91896 4.99238 5.00504 5.10918 5.13721 5.15793 5.24121 5.41483 5.49908 5.65999 5.71758 5.79184 5.88727 6.35254 6.53719 6.95370 7.01448 7.51044 8.96498 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.006141 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.710829 B = 4558.408613 C = 4757.613061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.192 4.192 3 C -0.126 4.126 4 C -0.088 4.088 5 C 0.149 3.851 6 H 0.059 0.941 7 C -0.161 4.161 8 N -0.677 5.677 9 C 0.220 3.780 10 H -0.025 1.025 11 C -0.133 4.133 12 C -0.506 4.506 13 H 0.044 0.956 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.275 1.275 20 C -0.202 4.202 21 C -0.080 4.080 22 S 0.088 5.912 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.137 0.863 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.328 0.672 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 -11.274 -8.427 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.308 4.308 3 C -0.156 4.156 4 C -0.100 4.100 5 C 0.036 3.964 6 H 0.077 0.923 7 C -0.220 4.220 8 N -0.307 5.307 9 C 0.111 3.889 10 H -0.007 1.007 11 C -0.192 4.192 12 C -0.545 4.545 13 H 0.062 0.938 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.778 3.222 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.200 1.200 20 C -0.319 4.319 21 C -0.139 4.139 22 S 0.353 5.647 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.155 0.845 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.049 -13.012 -7.759 17.647 hybrid contribution 1.243 1.992 0.342 2.373 sum -7.805 -11.021 -7.417 15.407 Atomic orbital electron populations 1.20367 0.85958 1.03478 1.03628 1.24719 1.01039 0.95008 1.10075 1.19901 0.92319 0.99708 1.03627 1.18889 0.95096 0.93544 1.02487 1.19965 0.93542 0.89155 0.93746 0.92327 1.22341 1.01294 1.01960 0.96448 1.60582 1.26872 1.07621 1.35632 1.18916 0.87531 0.89420 0.92990 1.00703 1.21775 1.00352 0.99032 0.98002 1.21402 1.19643 1.15384 0.98023 0.93766 1.25630 0.95872 0.95280 1.01918 1.69991 1.25642 1.22689 1.37786 0.85658 0.78192 0.77783 0.80608 1.20298 1.20642 1.19958 1.24371 0.99983 0.95853 1.11729 1.20352 0.89192 1.01608 1.02699 1.83674 0.96081 1.09622 1.75346 0.90483 0.90389 0.89465 0.84519 0.91711 0.93625 0.91130 0.85467 0.91893 0.94949 0.94824 0.93043 0.91377 0.89638 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.38 71.23 0.74 -0.73 16 2 C -0.19 -5.20 6.51 24.59 0.16 -5.04 16 3 C -0.13 -4.01 9.34 21.22 0.20 -3.81 16 4 C -0.09 -3.02 4.96 -20.92 -0.10 -3.12 16 5 C 0.15 5.65 2.06 44.17 0.09 5.74 16 6 H 0.06 2.58 7.05 -2.39 -0.02 2.57 16 7 C -0.16 -5.14 9.08 71.98 0.65 -4.49 16 8 N -0.68 -28.62 5.18 -477.15 -2.47 -31.10 16 9 C 0.22 11.12 2.41 44.17 0.11 11.23 16 10 H -0.02 -1.36 7.32 -2.39 -0.02 -1.38 16 11 C -0.13 -6.43 8.95 71.98 0.64 -5.78 16 12 C -0.51 -28.66 8.60 25.60 0.22 -28.44 16 13 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 14 C 0.01 0.62 5.30 84.66 0.45 1.07 16 15 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 16 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 20 C -0.20 -6.21 6.51 24.59 0.16 -6.05 16 21 C -0.08 -2.11 9.78 71.24 0.70 -1.41 16 22 S 0.09 2.32 23.31 -56.49 -1.32 1.00 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.14 4.36 7.49 -2.91 -0.02 4.34 16 27 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 28 H 0.04 1.55 7.67 -2.38 -0.02 1.53 16 29 H 0.07 1.97 7.38 -2.39 -0.02 1.96 16 30 H 0.33 12.39 7.78 -89.69 -0.70 11.69 16 31 H 0.06 3.38 6.05 -2.39 -0.01 3.37 16 32 H 0.03 1.34 8.13 -2.38 -0.02 1.32 16 33 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.97 6.58 -2.39 -0.02 1.95 16 Total: -1.00 -61.68 313.02 2.85 -58.83 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.35 Total: 18.23 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 4.01 Total: -40.84 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.23 Total: -84.21 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.32 Total: 1.00 kcal Total: -61.68 2.85 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.663 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds