Wall clock time and date at job start Mon Mar 30 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20296 * 2 1 4 4 C 1.38425 * 114.92123 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53762 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47039 * 220.02468 * 5 4 3 7 7 C 1.53002 * 109.46679 * 100.02449 * 5 4 3 8 8 N 1.46900 * 109.47181 * 340.02796 * 5 4 3 9 9 C 1.46896 * 110.99724 * 204.99911 * 8 5 4 10 10 H 1.09002 * 109.47320 * 324.99948 * 9 8 5 11 11 C 1.53005 * 109.47136 * 85.00090 * 9 8 5 12 12 C 1.50705 * 109.47140 * 204.99815 * 9 8 5 13 13 H 1.07998 * 119.99688 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00236 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99905 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00231 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47793 * 119.99419 * 16 14 12 19 19 H 1.48502 * 109.46892 * 239.99605 * 16 14 12 20 20 C 1.33383 * 114.92174 * 359.97438 * 4 3 2 21 21 C 1.50703 * 125.20415 * 180.02562 * 20 4 3 22 22 S 1.75887 * 109.59638 * 359.97438 * 20 4 3 23 23 H 1.09007 * 109.47039 * 90.00840 * 1 2 3 24 24 H 1.08998 * 109.47062 * 210.00206 * 1 2 3 25 25 H 1.08994 * 109.47215 * 330.00270 * 1 2 3 26 26 H 1.07997 * 122.53530 * 0.23800 * 3 2 1 27 27 H 1.09000 * 109.47401 * 299.99797 * 7 5 4 28 28 H 1.09001 * 109.47271 * 60.00027 * 7 5 4 29 29 H 1.08997 * 109.46971 * 180.02562 * 7 5 4 30 30 H 1.00898 * 110.99898 * 328.95164 * 8 5 4 31 31 H 1.09001 * 109.47018 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.46549 * 299.99592 * 11 9 8 33 33 H 1.08993 * 109.47401 * 59.99775 * 11 9 8 34 34 H 0.97007 * 120.00256 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46776 * 89.99460 * 21 20 4 36 36 H 1.08999 * 109.46856 * 209.99477 * 21 20 4 37 37 H 1.09002 * 109.46917 * 329.99965 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0006 5 6 4.6623 1.9483 0.0001 6 1 5.4867 1.6794 -0.6604 7 6 5.1926 2.1526 1.4206 8 7 4.0405 3.1919 -0.4740 9 6 5.0451 4.0975 -1.0471 10 1 5.9791 4.0010 -0.4935 11 6 5.2818 3.7338 -2.5143 12 6 4.5512 5.5184 -0.9552 13 1 3.5872 5.7275 -0.5155 14 6 5.3295 6.5511 -1.4334 15 7 6.5031 6.2963 -1.9693 16 14 4.7176 8.3123 -1.3189 17 1 3.3777 8.3302 -0.6788 18 1 5.6661 9.1141 -0.5049 19 1 4.6221 8.8927 -2.6824 20 6 3.9751 -0.4476 0.0016 21 6 5.3861 -0.9770 0.0029 22 16 2.5210 -1.4372 0.0026 23 1 -0.3633 -0.0002 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.8668 2.0894 0.0038 27 1 4.3683 2.4215 2.0811 28 1 5.6540 1.2299 1.7725 29 1 5.9332 2.9524 1.4204 30 1 3.3067 2.9986 -1.1390 31 1 6.0270 4.4061 -2.9396 32 1 5.6391 2.7062 -2.5807 33 1 4.3479 3.8303 -3.0678 34 1 7.0509 7.0229 -2.3054 35 1 5.7255 -1.1039 1.0309 36 1 5.4140 -1.9382 -0.5103 37 1 6.0392 -0.2716 -0.5109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049507165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:47 Heat of formation + Delta-G solvation = 16.817897 kcal Electronic energy + Delta-G solvation = -16749.817736 eV Core-core repulsion = 14232.133825 eV Total energy + Delta-G solvation = -2517.683911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.89861 -35.74585 -33.44769 -32.31946 -30.06930 -29.23654 -26.91301 -25.14381 -24.66460 -22.99881 -20.69765 -19.88265 -17.85547 -16.78328 -16.31197 -15.07339 -14.66137 -14.44062 -14.09393 -13.48737 -13.26471 -12.93061 -12.87018 -12.83502 -12.48662 -11.98686 -11.76867 -11.61416 -11.54961 -11.27780 -11.12835 -10.93047 -10.88787 -10.70257 -10.39890 -10.31479 -10.05132 -9.71394 -8.95281 -8.33779 -8.21474 -8.04973 -7.21496 -5.96100 -3.98813 1.19090 1.78988 2.15376 2.98652 3.33078 3.40845 3.46161 4.46249 4.92964 5.06763 5.22802 5.29590 5.35790 5.43574 5.52783 5.57649 5.60384 5.81493 5.89965 5.97109 6.06661 6.10359 6.24815 6.42411 6.56191 6.67369 6.72179 6.81450 6.87214 6.87927 7.14576 7.42651 7.77004 7.92766 8.31449 8.57677 8.65557 9.08826 9.66484 11.11096 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.005309 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.694040 B = 5272.789897 C = 5760.808211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.188 4.188 3 C -0.114 4.114 4 C -0.088 4.088 5 C 0.142 3.858 6 H 0.045 0.955 7 C -0.128 4.128 8 N -0.677 5.677 9 C 0.211 3.789 10 H 0.035 0.965 11 C -0.169 4.169 12 C -0.491 4.491 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.184 4.184 21 C -0.080 4.080 22 S 0.059 5.941 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.149 0.851 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.327 0.673 31 H 0.089 0.911 32 H 0.004 0.996 33 H 0.027 0.973 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -14.490 3.645 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.304 4.304 3 C -0.144 4.144 4 C -0.100 4.100 5 C 0.029 3.971 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.308 5.308 9 C 0.103 3.897 10 H 0.053 0.947 11 C -0.228 4.228 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.301 4.301 21 C -0.138 4.138 22 S 0.323 5.677 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.167 0.833 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.023 0.977 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.583 -15.659 4.196 17.497 hybrid contribution 0.244 2.019 -0.929 2.236 sum -6.339 -13.640 3.267 15.392 Atomic orbital electron populations 1.20281 0.88141 1.02778 1.02450 1.24303 0.99507 0.95267 1.11345 1.20066 0.92367 0.99696 1.02231 1.19105 0.95094 0.93883 1.01940 1.20125 0.92668 0.87544 0.96759 0.93749 1.21707 1.00971 1.00322 0.95614 1.60956 1.14327 1.11345 1.44215 1.19213 0.90381 0.90800 0.89294 0.94703 1.22434 1.01363 0.97441 1.01572 1.21187 1.03945 0.90220 1.37670 0.91932 1.24946 0.95016 0.99094 0.95525 1.69896 1.10862 1.31687 1.41365 0.86472 0.78862 0.84757 0.77479 1.19771 1.21185 1.21276 1.24102 0.98474 0.95707 1.11782 1.20317 0.90215 1.00860 1.02432 1.83906 0.97346 1.10487 1.75979 0.91057 0.91818 0.90532 0.83315 0.92451 0.93795 0.91957 0.85550 0.89288 0.97731 0.95432 0.93189 0.90975 0.91860 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.38 36.01 0.37 -0.43 16 2 C -0.19 -2.54 6.51 -36.00 -0.23 -2.78 16 3 C -0.11 -1.77 8.87 -41.21 -0.37 -2.13 16 4 C -0.09 -1.44 4.87 -106.25 -0.52 -1.95 16 5 C 0.14 2.59 2.30 -68.86 -0.16 2.43 16 6 H 0.04 0.86 5.98 -51.93 -0.31 0.55 16 7 C -0.13 -2.22 9.38 37.16 0.35 -1.87 16 8 N -0.68 -14.34 5.53 -102.16 -0.56 -14.91 16 9 C 0.21 5.27 2.38 -68.86 -0.16 5.10 16 10 H 0.04 0.95 7.11 -51.93 -0.37 0.58 16 11 C -0.17 -4.10 8.92 37.16 0.33 -3.77 16 12 C -0.49 -13.55 8.84 -34.44 -0.30 -13.86 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 15 N -0.90 -25.71 11.32 55.43 0.63 -25.08 16 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.18 -2.66 6.50 -36.00 -0.23 -2.90 16 21 C -0.08 -0.97 9.79 36.01 0.35 -0.61 16 22 S 0.06 0.76 23.31 -107.50 -2.51 -1.75 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.15 2.37 7.16 -52.49 -0.38 1.99 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.65 7.88 -51.93 -0.41 0.24 16 29 H 0.06 1.17 7.43 -51.93 -0.39 0.79 16 30 H 0.33 6.72 6.90 -39.29 -0.27 6.45 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 32 H 0.00 0.08 7.43 -51.93 -0.39 -0.30 16 33 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.00 6.85 -51.93 -0.36 0.64 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -28.54 310.98 -9.13 -37.66 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.68 Total: 4.22 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -0.67 Total: -21.36 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.06 Total: -39.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.54 -9.13 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.481 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds