Wall clock time and date at job start Mon Mar 30 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20296 * 2 1 4 4 C 1.38425 * 114.92123 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53762 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47039 * 220.02468 * 5 4 3 7 7 C 1.53002 * 109.46679 * 100.02449 * 5 4 3 8 8 N 1.46900 * 109.47181 * 340.02796 * 5 4 3 9 9 C 1.46896 * 110.99724 * 204.99911 * 8 5 4 10 10 H 1.09002 * 109.47320 * 324.99948 * 9 8 5 11 11 C 1.53005 * 109.47136 * 85.00090 * 9 8 5 12 12 C 1.50705 * 109.47140 * 204.99815 * 9 8 5 13 13 H 1.07998 * 119.99688 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00236 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99905 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00231 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47793 * 119.99419 * 16 14 12 19 19 H 1.48502 * 109.46892 * 239.99605 * 16 14 12 20 20 C 1.33383 * 114.92174 * 359.97438 * 4 3 2 21 21 C 1.50703 * 125.20415 * 180.02562 * 20 4 3 22 22 S 1.75887 * 109.59638 * 359.97438 * 20 4 3 23 23 H 1.09007 * 109.47039 * 90.00840 * 1 2 3 24 24 H 1.08998 * 109.47062 * 210.00206 * 1 2 3 25 25 H 1.08994 * 109.47215 * 330.00270 * 1 2 3 26 26 H 1.07997 * 122.53530 * 0.23800 * 3 2 1 27 27 H 1.09000 * 109.47401 * 299.99797 * 7 5 4 28 28 H 1.09001 * 109.47271 * 60.00027 * 7 5 4 29 29 H 1.08997 * 109.46971 * 180.02562 * 7 5 4 30 30 H 1.00898 * 110.99898 * 328.95164 * 8 5 4 31 31 H 1.09001 * 109.47018 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.46549 * 299.99592 * 11 9 8 33 33 H 1.08993 * 109.47401 * 59.99775 * 11 9 8 34 34 H 0.97007 * 120.00256 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46776 * 89.99460 * 21 20 4 36 36 H 1.08999 * 109.46856 * 209.99477 * 21 20 4 37 37 H 1.09002 * 109.46917 * 329.99965 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0006 5 6 4.6623 1.9483 0.0001 6 1 5.4867 1.6794 -0.6604 7 6 5.1926 2.1526 1.4206 8 7 4.0405 3.1919 -0.4740 9 6 5.0451 4.0975 -1.0471 10 1 5.9791 4.0010 -0.4935 11 6 5.2818 3.7338 -2.5143 12 6 4.5512 5.5184 -0.9552 13 1 3.5872 5.7275 -0.5155 14 6 5.3295 6.5511 -1.4334 15 7 6.5031 6.2963 -1.9693 16 14 4.7176 8.3123 -1.3189 17 1 3.3777 8.3302 -0.6788 18 1 5.6661 9.1141 -0.5049 19 1 4.6221 8.8927 -2.6824 20 6 3.9751 -0.4476 0.0016 21 6 5.3861 -0.9770 0.0029 22 16 2.5210 -1.4372 0.0026 23 1 -0.3633 -0.0002 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.8668 2.0894 0.0038 27 1 4.3683 2.4215 2.0811 28 1 5.6540 1.2299 1.7725 29 1 5.9332 2.9524 1.4204 30 1 3.3067 2.9986 -1.1390 31 1 6.0270 4.4061 -2.9396 32 1 5.6391 2.7062 -2.5807 33 1 4.3479 3.8303 -3.0678 34 1 7.0509 7.0229 -2.3054 35 1 5.7255 -1.1039 1.0309 36 1 5.4140 -1.9382 -0.5103 37 1 6.0392 -0.2716 -0.5109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049507165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:46 Heat of formation + Delta-G solvation = 1.197037 kcal Electronic energy + Delta-G solvation = -16750.495108 eV Core-core repulsion = 14232.133825 eV Total energy + Delta-G solvation = -2518.361282 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17276 -37.40667 -34.94900 -33.85305 -31.74241 -30.22135 -28.63749 -27.24004 -25.78945 -24.33175 -22.06743 -21.64761 -19.16794 -18.23353 -17.89700 -16.84771 -16.25487 -15.92769 -15.31963 -14.82412 -14.55648 -14.32912 -14.14600 -13.94558 -13.73451 -13.54493 -13.33288 -13.02369 -12.96723 -12.80468 -12.72122 -12.54225 -12.24878 -12.23122 -12.10090 -11.95811 -11.86627 -11.29725 -10.99147 -10.47210 -9.27410 -9.17343 -8.94684 -8.08335 -6.18772 0.09112 0.73138 1.05169 1.42357 1.44192 1.56442 1.80478 2.45233 3.20307 3.62448 3.90574 3.96473 4.27980 4.39443 4.45766 4.54627 4.57745 4.73120 4.73701 4.76761 4.83194 4.89305 4.90182 4.99691 5.07139 5.16318 5.17815 5.32553 5.36870 5.39955 5.56089 5.67144 5.70878 5.86281 6.29963 6.67888 6.84554 6.96412 7.51124 8.97686 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.005309 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.694040 B = 5272.789897 C = 5760.808211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.185 4.185 3 C -0.140 4.140 4 C -0.110 4.110 5 C 0.146 3.854 6 H 0.033 0.967 7 C -0.121 4.121 8 N -0.677 5.677 9 C 0.218 3.782 10 H 0.006 0.994 11 C -0.155 4.155 12 C -0.510 4.510 13 H 0.054 0.946 14 C 0.008 3.992 15 N -0.923 5.923 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.191 4.191 21 C -0.082 4.082 22 S 0.104 5.896 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.330 0.670 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -15.856 3.930 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.302 4.302 3 C -0.170 4.170 4 C -0.122 4.122 5 C 0.033 3.967 6 H 0.051 0.949 7 C -0.179 4.179 8 N -0.308 5.308 9 C 0.109 3.891 10 H 0.024 0.976 11 C -0.215 4.215 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.308 4.308 21 C -0.140 4.140 22 S 0.369 5.631 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.793 -17.038 4.487 19.266 hybrid contribution 0.596 2.328 -1.000 2.603 sum -7.197 -14.710 3.487 16.743 Atomic orbital electron populations 1.20411 0.85941 1.03930 1.03519 1.24725 1.01133 0.95097 1.09241 1.20001 0.92440 0.99923 1.04628 1.18913 0.94849 0.93855 1.04534 1.20048 0.92956 0.87080 0.96570 0.94926 1.21643 1.00213 1.00798 0.95276 1.60831 1.13593 1.12698 1.43706 1.18946 0.89883 0.90892 0.89353 0.97645 1.22244 1.00579 0.97711 1.00947 1.21458 1.03735 0.91862 1.37863 0.92784 1.25702 0.95146 1.02969 0.95131 1.70017 1.11741 1.32828 1.41792 0.85477 0.78395 0.79951 0.77591 1.19354 1.20789 1.20667 1.24439 1.00356 0.95610 1.10403 1.20409 0.88730 1.01396 1.03490 1.83740 0.95623 1.09018 1.74738 0.89916 0.90040 0.90037 0.84558 0.92890 0.91101 0.94309 0.85211 0.91862 0.96070 0.95230 0.93065 0.89544 0.89954 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.38 71.24 0.74 -0.70 16 2 C -0.18 -4.65 6.51 24.59 0.16 -4.49 16 3 C -0.14 -4.27 8.87 21.22 0.19 -4.08 16 4 C -0.11 -3.49 4.87 -20.92 -0.10 -3.60 16 5 C 0.15 5.38 2.30 44.17 0.10 5.49 16 6 H 0.03 1.28 5.98 -2.39 -0.01 1.27 16 7 C -0.12 -4.25 9.38 71.98 0.68 -3.57 16 8 N -0.68 -29.34 5.53 -477.14 -2.64 -31.98 16 9 C 0.22 11.20 2.38 44.17 0.11 11.31 16 10 H 0.01 0.32 7.11 -2.39 -0.02 0.30 16 11 C -0.16 -7.69 8.92 71.98 0.64 -7.05 16 12 C -0.51 -28.71 8.84 25.60 0.23 -28.48 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 14 C 0.01 0.47 5.30 84.65 0.45 0.92 16 15 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 16 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C -0.19 -5.19 6.50 24.59 0.16 -5.03 16 21 C -0.08 -1.82 9.79 71.24 0.70 -1.12 16 22 S 0.10 2.42 23.31 -56.49 -1.32 1.10 16 23 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.14 4.40 7.16 -2.91 -0.02 4.38 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 2.05 7.88 -2.39 -0.02 2.03 16 29 H 0.04 1.51 7.43 -2.39 -0.02 1.49 16 30 H 0.33 13.84 6.90 -89.70 -0.62 13.22 16 31 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 32 H 0.02 0.93 7.43 -2.39 -0.02 0.91 16 33 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 34 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.67 6.85 -2.39 -0.02 1.65 16 Total: -1.00 -61.05 310.98 2.79 -58.25 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.44 Total: 20.03 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 4.04 Total: -40.41 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.39 Total: -85.46 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.32 Total: 1.10 kcal Total: -61.05 2.79 -58.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.448 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds