Wall clock time and date at job start Mon Mar 30 2020 07:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33388 * 125.20578 * 2 1 4 4 C 1.38424 * 114.92062 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.54129 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47763 * 220.02719 * 5 4 3 7 7 C 1.53007 * 109.47068 * 100.02402 * 5 4 3 8 8 N 1.46902 * 109.47173 * 340.02736 * 5 4 3 9 9 C 1.46904 * 111.00057 * 273.22159 * 8 5 4 10 10 H 1.09000 * 109.46666 * 35.83115 * 9 8 5 11 11 C 1.52997 * 109.46669 * 275.83308 * 9 8 5 12 12 C 1.50690 * 109.47241 * 155.83590 * 9 8 5 13 13 H 1.08004 * 120.00080 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00345 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99597 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00450 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47086 * 119.99961 * 16 14 12 19 19 H 1.48502 * 109.47137 * 240.00202 * 16 14 12 20 20 C 1.33399 * 114.91880 * 0.24995 * 4 3 2 21 21 C 1.50698 * 125.19661 * 179.75627 * 20 4 3 22 22 S 1.75879 * 109.59229 * 359.63395 * 20 4 3 23 23 H 1.08997 * 109.47143 * 89.99313 * 1 2 3 24 24 H 1.08997 * 109.47356 * 209.99876 * 1 2 3 25 25 H 1.09005 * 109.46459 * 330.00189 * 1 2 3 26 26 H 1.07992 * 122.53780 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.46880 * 304.89408 * 7 5 4 28 28 H 1.09000 * 109.46781 * 64.89069 * 7 5 4 29 29 H 1.08990 * 109.47185 * 184.89139 * 7 5 4 30 30 H 1.00900 * 110.99979 * 149.26279 * 8 5 4 31 31 H 1.09003 * 109.47452 * 293.93104 * 11 9 8 32 32 H 1.09004 * 109.47382 * 53.92697 * 11 9 8 33 33 H 1.08997 * 109.46982 * 173.93008 * 11 9 8 34 34 H 0.96994 * 120.00186 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47031 * 90.00309 * 21 20 4 36 36 H 1.09011 * 109.46680 * 209.99614 * 21 20 4 37 37 H 1.09001 * 109.47499 * 329.99572 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 -0.0006 5 6 4.6624 1.9480 -0.0012 6 1 5.4863 1.6795 -0.6624 7 6 5.1939 2.1516 1.4191 8 7 4.0404 3.1919 -0.4742 9 6 4.0928 3.2826 -1.9395 10 1 3.9636 2.2895 -2.3698 11 6 5.4472 3.8515 -2.3670 12 6 2.9913 4.1884 -2.4265 13 1 2.3192 4.6501 -1.7183 14 6 2.8415 4.4277 -3.7760 15 7 3.6603 3.8658 -4.6383 16 14 1.4756 5.5499 -4.3797 17 1 0.6978 6.0518 -3.2185 18 1 2.0661 6.6976 -5.1140 19 1 0.5766 4.7918 -5.2865 20 6 3.9751 -0.4480 -0.0063 21 6 5.3860 -0.9772 -0.0134 22 16 2.5209 -1.4372 -0.0008 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3632 0.8901 0.5138 26 1 1.8670 2.0894 0.0004 27 1 4.3597 2.3345 2.0963 28 1 5.7312 1.2583 1.7374 29 1 5.8693 3.0068 1.4351 30 1 4.4719 3.9974 -0.0463 31 1 5.5313 4.8839 -2.0275 32 1 6.2469 3.2574 -1.9246 33 1 5.5285 3.8186 -3.4535 34 1 3.5551 4.0344 -5.5877 35 1 5.7300 -1.1085 1.0126 36 1 5.4116 -1.9365 -0.5306 37 1 6.0369 -0.2699 -0.5272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049507170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:55 Heat of formation + Delta-G solvation = 16.938201 kcal Electronic energy + Delta-G solvation = -17017.662876 eV Core-core repulsion = 14499.984182 eV Total energy + Delta-G solvation = -2517.678694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.64677 -35.64961 -33.34958 -32.25367 -30.21843 -29.02263 -26.75021 -25.08462 -24.53319 -22.82545 -20.59516 -20.02869 -17.50567 -16.60276 -16.20169 -14.94793 -14.74787 -14.12791 -13.86496 -13.52629 -13.20937 -13.02780 -12.77513 -12.52455 -12.33023 -12.07541 -11.79331 -11.50475 -11.45351 -11.24189 -11.05119 -10.88276 -10.76141 -10.55729 -10.41812 -10.20670 -10.08115 -9.79390 -8.92633 -8.34076 -7.88438 -7.77864 -7.23787 -5.95445 -3.97715 1.49115 2.08268 2.43980 3.32661 3.34661 3.40553 3.45202 4.46117 5.15120 5.26218 5.29364 5.37016 5.52722 5.58479 5.64179 5.65774 5.75745 5.82170 5.85050 6.07270 6.11101 6.22101 6.32815 6.43915 6.50923 6.70999 6.80189 6.87101 6.99265 7.13660 7.19067 7.47625 7.75649 7.92089 8.31122 8.57854 8.65822 9.09261 9.67269 11.12239 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.007306 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.177674 B = 3831.350510 C = 4563.959445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.196 4.196 3 C -0.085 4.085 4 C -0.066 4.066 5 C 0.138 3.862 6 H 0.047 0.953 7 C -0.144 4.144 8 N -0.678 5.678 9 C 0.214 3.786 10 H 0.034 0.966 11 C -0.167 4.167 12 C -0.492 4.492 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.195 4.195 21 C -0.075 4.075 22 S 0.043 5.957 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.328 0.672 31 H 0.030 0.970 32 H 0.003 0.997 33 H 0.084 0.916 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -8.165 10.264 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.312 4.312 3 C -0.114 4.114 4 C -0.079 4.079 5 C 0.025 3.975 6 H 0.065 0.935 7 C -0.202 4.202 8 N -0.308 5.308 9 C 0.106 3.894 10 H 0.052 0.948 11 C -0.226 4.226 12 C -0.531 4.531 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.311 4.311 21 C -0.134 4.134 22 S 0.306 5.694 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.171 0.829 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.366 -9.997 10.080 14.202 hybrid contribution 0.527 2.261 -0.802 2.456 sum 0.161 -7.736 9.279 12.082 Atomic orbital electron populations 1.20236 0.88442 1.02234 1.02421 1.24257 0.99339 0.95058 1.12584 1.20084 0.92210 0.99748 0.99393 1.18866 0.95246 0.92925 1.00844 1.20041 0.92115 0.90438 0.94901 0.93534 1.21918 1.00679 1.01005 0.96635 1.60721 1.58287 1.01374 1.10465 1.19174 0.92436 0.96861 0.80907 0.94839 1.22428 0.97579 0.98000 1.04610 1.21156 1.13299 1.27169 0.91437 0.91983 1.24940 0.96316 0.96326 0.96918 1.69909 1.37489 1.44387 1.01870 0.86504 0.82109 0.80444 0.78708 1.19762 1.21279 1.21231 1.24000 0.98152 0.95861 1.13120 1.20254 0.90510 1.00829 1.01825 1.83760 0.97650 1.11078 1.76869 0.91136 0.92214 0.90763 0.82871 0.92104 0.92776 0.92700 0.85408 0.95127 0.97791 0.89726 0.93234 0.91465 0.91978 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.38 36.01 0.37 -0.64 16 2 C -0.20 -3.29 6.51 -36.00 -0.23 -3.52 16 3 C -0.08 -1.60 9.33 -41.21 -0.38 -1.98 16 4 C -0.07 -1.20 4.73 -106.25 -0.50 -1.71 16 5 C 0.14 2.47 2.28 -68.86 -0.16 2.31 16 6 H 0.05 0.89 5.89 -51.93 -0.31 0.58 16 7 C -0.14 -2.07 9.20 37.16 0.34 -1.73 16 8 N -0.68 -13.96 5.00 -102.17 -0.51 -14.47 16 9 C 0.21 5.31 2.38 -68.87 -0.16 5.15 16 10 H 0.03 0.95 7.71 -51.93 -0.40 0.55 16 11 C -0.17 -4.00 8.85 37.16 0.33 -3.67 16 12 C -0.49 -13.47 8.84 -34.44 -0.30 -13.77 16 13 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 14 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 15 N -0.90 -25.87 11.39 55.43 0.63 -25.24 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.19 -3.20 6.51 -36.00 -0.23 -3.44 16 21 C -0.08 -1.00 9.87 36.00 0.36 -0.65 16 22 S 0.04 0.66 23.31 -107.50 -2.51 -1.84 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.15 3.10 7.53 -52.49 -0.40 2.71 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.69 7.97 -51.93 -0.41 0.28 16 29 H 0.05 0.73 8.03 -51.93 -0.42 0.31 16 30 H 0.33 6.39 8.02 -39.29 -0.32 6.07 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.00 0.07 7.33 -51.93 -0.38 -0.31 16 33 H 0.08 2.26 6.25 -51.93 -0.32 1.93 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.07 1.01 6.84 -51.93 -0.36 0.66 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -28.80 313.42 -9.17 -37.97 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.81 Total: 4.48 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -0.68 Total: -22.20 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.12 Total: -39.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.80 -9.17 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049507170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.907 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds