Wall clock time and date at job start Mon Mar 30 2020 07:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47020 * 2 1 4 4 C 1.53004 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46558 * 55.00286 * 4 3 2 6 6 N 1.46894 * 109.47279 * 295.00175 * 4 3 2 7 7 C 1.46904 * 111.00006 * 155.00122 * 6 4 3 8 8 H 1.09000 * 109.47038 * 34.99283 * 7 6 4 9 9 C 1.53005 * 109.46661 * 274.99752 * 7 6 4 10 10 C 1.50701 * 109.47195 * 155.00140 * 7 6 4 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27796 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.50701 * 109.47108 * 174.99829 * 4 3 2 19 19 C 1.33386 * 125.20433 * 259.72419 * 18 4 3 20 20 C 1.38423 * 114.92015 * 179.85772 * 19 18 4 21 21 C 1.33384 * 114.92215 * 0.43161 * 20 19 18 22 22 S 1.75878 * 125.20036 * 80.02458 * 18 4 3 23 23 H 1.08994 * 109.47156 * 299.99882 * 1 2 3 24 24 H 1.08999 * 109.46976 * 60.00502 * 1 2 3 25 25 H 1.08997 * 109.46598 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47625 * 239.99868 * 2 1 3 27 27 H 1.09007 * 109.47282 * 119.99450 * 2 1 3 28 28 H 1.09004 * 109.46965 * 60.00029 * 3 2 1 29 29 H 1.08999 * 109.46836 * 299.99583 * 3 2 1 30 30 H 1.00895 * 111.00231 * 31.04574 * 6 4 3 31 31 H 1.08995 * 109.47438 * 299.99503 * 9 7 6 32 32 H 1.08996 * 109.47069 * 60.00362 * 9 7 6 33 33 H 1.09004 * 109.46658 * 179.97438 * 9 7 6 34 34 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 35 35 H 1.08005 * 122.53762 * 0.02562 * 19 18 4 36 36 H 1.08004 * 122.53529 * 180.19964 * 20 19 18 37 37 H 1.07997 * 125.20692 * 179.79401 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 7 4.0592 0.8574 1.2561 7 6 5.4067 0.2975 1.0861 8 1 5.9708 0.9143 0.3864 9 6 5.3014 -1.1277 0.5394 10 6 6.1125 0.2740 2.4174 11 1 5.6105 0.6389 3.3012 12 6 7.4014 -0.2076 2.5058 13 7 8.0128 -0.6517 1.4294 14 14 8.2791 -0.2296 4.1545 15 1 7.3805 0.3203 5.2011 16 1 8.6468 -1.6260 4.5011 17 1 9.5081 0.5999 4.0722 18 6 4.0724 2.8580 -0.1232 19 6 4.5125 3.4220 -1.2490 20 6 4.9220 4.7380 -1.1207 21 6 4.8229 5.2399 0.1111 22 16 4.1751 4.0165 1.1961 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.4188 0.1594 1.6034 31 1 4.7373 -1.7445 1.2390 32 1 4.7909 -1.1106 -0.4235 33 1 6.3012 -1.5430 0.4128 34 1 8.9197 -0.9901 1.4916 35 1 4.5443 2.8928 -2.1900 36 1 5.2970 5.3136 -1.9541 37 1 5.0979 6.2440 0.3983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:55 Heat of formation + Delta-G solvation = 16.435253 kcal Electronic energy + Delta-G solvation = -16867.810779 eV Core-core repulsion = 14350.110276 eV Total energy + Delta-G solvation = -2517.700504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.11026 -36.40086 -34.28638 -32.29465 -30.41229 -27.98656 -26.50506 -25.08012 -23.96837 -21.91083 -20.60317 -20.04323 -18.75094 -16.53640 -16.15729 -15.37089 -14.95418 -14.61499 -14.39799 -13.66806 -13.30729 -12.85287 -12.43177 -12.31131 -12.13933 -12.01950 -11.81169 -11.61972 -11.36336 -11.02494 -10.90663 -10.75311 -10.63399 -10.45821 -10.37214 -10.12085 -10.02783 -9.82450 -8.95188 -8.33075 -8.09496 -7.84696 -7.31273 -5.94826 -3.97328 1.56222 2.26425 2.69362 3.23815 3.33754 3.41552 3.46841 4.47040 4.90280 5.12241 5.22618 5.27878 5.37423 5.45825 5.53275 5.74798 5.83943 5.89639 5.91746 5.98524 6.09054 6.15471 6.25434 6.42225 6.53900 6.58803 6.69961 6.79505 6.85112 6.96652 7.11752 7.39369 7.75780 7.91583 8.29508 8.54661 8.62436 9.09673 9.67625 11.12475 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.008080 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.120430 B = 3464.433493 C = 4570.389169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.149 3.851 5 H 0.055 0.945 6 N -0.678 5.678 7 C 0.213 3.787 8 H 0.035 0.965 9 C -0.168 4.168 10 C -0.490 4.490 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.287 1.287 17 H -0.286 1.286 18 C -0.131 4.131 19 C -0.167 4.167 20 C -0.133 4.133 21 C -0.251 4.251 22 S 0.155 5.845 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.331 0.669 31 H 0.027 0.973 32 H 0.004 0.996 33 H 0.088 0.912 34 H 0.258 0.742 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 5.982 -4.502 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.153 4.153 4 C 0.037 3.963 5 H 0.072 0.928 6 N -0.310 5.310 7 C 0.106 3.894 8 H 0.052 0.948 9 C -0.228 4.228 10 C -0.529 4.529 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.212 1.212 18 C -0.250 4.250 19 C -0.197 4.197 20 C -0.165 4.165 21 C -0.387 4.387 22 S 0.419 5.581 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.935 6.478 -2.736 13.001 hybrid contribution 1.004 -0.811 -1.314 1.842 sum -9.931 5.667 -4.050 12.130 Atomic orbital electron populations 1.21738 0.95984 1.01277 1.01558 1.21583 0.95612 0.96968 1.02380 1.21787 0.94299 0.96810 1.02373 1.19933 0.92916 0.88997 0.94496 0.92771 1.60861 1.05900 1.39409 1.24878 1.19192 0.83703 0.89705 0.96842 0.94756 1.22432 1.03046 1.01379 0.95895 1.21157 0.98002 1.39573 0.94135 0.91920 1.24929 0.97431 0.95669 0.96481 1.69892 1.12928 1.43259 1.27673 0.86497 0.79584 0.77380 0.84282 1.19718 1.21288 1.21203 1.24731 1.04899 0.99719 0.95649 1.19978 1.05199 0.95549 0.98986 1.19964 1.03693 0.95563 0.97245 1.25670 1.11353 1.03825 0.97848 1.84322 1.60887 1.01135 1.11707 0.92740 0.93061 0.92995 0.92173 0.91414 0.91184 0.91843 0.84935 0.95375 0.97708 0.89291 0.93217 0.85309 0.85456 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.65 5.76 -26.73 -0.15 -1.80 16 3 C -0.11 -1.62 4.79 -26.73 -0.13 -1.75 16 4 C 0.15 2.63 2.29 -68.86 -0.16 2.48 16 5 H 0.05 1.02 7.09 -51.93 -0.37 0.65 16 6 N -0.68 -13.93 5.80 -102.16 -0.59 -14.52 16 7 C 0.21 5.29 2.38 -68.86 -0.16 5.12 16 8 H 0.03 0.97 7.64 -51.93 -0.40 0.57 16 9 C -0.17 -4.00 8.92 37.16 0.33 -3.67 16 10 C -0.49 -13.51 8.84 -34.44 -0.30 -13.81 16 11 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.06 1.54 5.31 -17.82 -0.09 1.45 16 13 N -0.90 -25.90 11.33 55.43 0.63 -25.28 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C -0.13 -2.36 5.11 -36.00 -0.18 -2.54 16 19 C -0.17 -2.80 10.04 -41.21 -0.41 -3.22 16 20 C -0.13 -2.06 10.18 -41.21 -0.42 -2.48 16 21 C -0.25 -3.87 11.23 29.04 0.33 -3.55 16 22 S 0.15 2.69 23.07 -107.50 -2.48 0.21 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.33 6.41 6.21 -39.29 -0.24 6.17 16 31 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.00 0.09 7.43 -51.93 -0.39 -0.30 16 33 H 0.09 2.37 6.08 -51.93 -0.32 2.06 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -28.74 313.96 -9.54 -38.29 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.82 Total: 4.84 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -0.99 Total: -24.99 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.04 Total: -39.80 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.48 Total: 0.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.74 -9.54 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.721 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds