Wall clock time and date at job start Mon Mar 30 2020 07:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47020 * 2 1 4 4 C 1.53004 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46558 * 55.00286 * 4 3 2 6 6 N 1.46894 * 109.47279 * 295.00175 * 4 3 2 7 7 C 1.46904 * 111.00006 * 155.00122 * 6 4 3 8 8 H 1.09000 * 109.47038 * 34.99283 * 7 6 4 9 9 C 1.53005 * 109.46661 * 274.99752 * 7 6 4 10 10 C 1.50701 * 109.47195 * 155.00140 * 7 6 4 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27796 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.50701 * 109.47108 * 174.99829 * 4 3 2 19 19 C 1.33386 * 125.20433 * 259.72419 * 18 4 3 20 20 C 1.38423 * 114.92015 * 179.85772 * 19 18 4 21 21 C 1.33384 * 114.92215 * 0.43161 * 20 19 18 22 22 S 1.75878 * 125.20036 * 80.02458 * 18 4 3 23 23 H 1.08994 * 109.47156 * 299.99882 * 1 2 3 24 24 H 1.08999 * 109.46976 * 60.00502 * 1 2 3 25 25 H 1.08997 * 109.46598 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47625 * 239.99868 * 2 1 3 27 27 H 1.09007 * 109.47282 * 119.99450 * 2 1 3 28 28 H 1.09004 * 109.46965 * 60.00029 * 3 2 1 29 29 H 1.08999 * 109.46836 * 299.99583 * 3 2 1 30 30 H 1.00895 * 111.00231 * 31.04574 * 6 4 3 31 31 H 1.08995 * 109.47438 * 299.99503 * 9 7 6 32 32 H 1.08996 * 109.47069 * 60.00362 * 9 7 6 33 33 H 1.09004 * 109.46658 * 179.97438 * 9 7 6 34 34 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 35 35 H 1.08005 * 122.53762 * 0.02562 * 19 18 4 36 36 H 1.08004 * 122.53529 * 180.19964 * 20 19 18 37 37 H 1.07997 * 125.20692 * 179.79401 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 7 4.0592 0.8574 1.2561 7 6 5.4067 0.2975 1.0861 8 1 5.9708 0.9143 0.3864 9 6 5.3014 -1.1277 0.5394 10 6 6.1125 0.2740 2.4174 11 1 5.6105 0.6389 3.3012 12 6 7.4014 -0.2076 2.5058 13 7 8.0128 -0.6517 1.4294 14 14 8.2791 -0.2296 4.1545 15 1 7.3805 0.3203 5.2011 16 1 8.6468 -1.6260 4.5011 17 1 9.5081 0.5999 4.0722 18 6 4.0724 2.8580 -0.1232 19 6 4.5125 3.4220 -1.2490 20 6 4.9220 4.7380 -1.1207 21 6 4.8229 5.2399 0.1111 22 16 4.1751 4.0165 1.1961 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.4188 0.1594 1.6034 31 1 4.7373 -1.7445 1.2390 32 1 4.7909 -1.1106 -0.4235 33 1 6.3012 -1.5430 0.4128 34 1 8.9197 -0.9901 1.4916 35 1 4.5443 2.8928 -2.1900 36 1 5.2970 5.3136 -1.9541 37 1 5.0979 6.2440 0.3983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:54 Heat of formation + Delta-G solvation = 0.757486 kcal Electronic energy + Delta-G solvation = -16868.490618 eV Core-core repulsion = 14350.110276 eV Total energy + Delta-G solvation = -2518.380343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.51204 -37.79380 -35.88743 -33.96579 -31.98674 -29.44776 -27.91898 -27.18437 -25.21027 -23.13156 -22.28449 -21.51253 -20.02570 -18.40634 -17.67540 -16.88662 -16.54004 -16.03285 -15.92915 -15.06780 -14.63542 -14.48696 -13.81601 -13.71175 -13.61634 -13.36791 -13.19567 -13.02946 -12.89200 -12.83245 -12.55173 -12.28301 -12.15620 -12.06905 -11.79795 -11.63902 -11.49603 -11.38176 -10.97429 -10.47089 -9.39688 -9.20121 -8.99912 -8.07769 -6.17519 0.26963 0.96142 1.39553 1.40620 1.42885 1.54751 1.97127 2.44757 3.21280 3.55209 3.89647 4.07638 4.13147 4.31965 4.38703 4.53481 4.68322 4.76441 4.77961 4.80118 4.84717 4.88440 4.95718 5.07540 5.15332 5.29039 5.29152 5.33563 5.46125 5.49042 5.52269 5.70103 5.72820 5.86660 6.30042 6.65931 6.84815 6.97904 7.51999 8.98138 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.008080 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.120430 B = 3464.433493 C = 4570.389169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.103 4.103 4 C 0.151 3.849 5 H 0.041 0.959 6 N -0.678 5.678 7 C 0.225 3.775 8 H -0.004 1.004 9 C -0.155 4.155 10 C -0.505 4.505 11 H 0.054 0.946 12 C 0.009 3.991 13 N -0.923 5.923 14 Si 0.955 3.045 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.285 1.285 18 C -0.157 4.157 19 C -0.171 4.171 20 C -0.140 4.140 21 C -0.241 4.241 22 S 0.117 5.883 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.337 0.663 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.259 0.741 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 6.697 -4.620 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.141 4.141 4 C 0.039 3.961 5 H 0.059 0.941 6 N -0.310 5.310 7 C 0.117 3.883 8 H 0.014 0.986 9 C -0.215 4.215 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.781 3.219 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.211 1.211 18 C -0.276 4.276 19 C -0.201 4.201 20 C -0.171 4.171 21 C -0.377 4.377 22 S 0.381 5.619 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.158 0.842 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.750 7.195 -2.857 14.071 hybrid contribution 1.251 -0.976 -1.342 2.078 sum -10.499 6.219 -4.199 12.905 Atomic orbital electron populations 1.21696 0.93949 1.02160 1.02245 1.21564 0.97371 0.95784 1.01667 1.21708 0.91580 0.97891 1.02939 1.19971 0.95148 0.88594 0.92359 0.94125 1.60692 1.04348 1.39119 1.26861 1.18836 0.85285 0.89561 0.94656 0.98597 1.22234 1.01558 1.00623 0.97050 1.21440 0.98589 1.39447 0.94945 0.92790 1.25665 0.98191 0.95407 0.99644 1.70019 1.13149 1.43818 1.29413 0.85553 0.78316 0.77532 0.80508 1.19238 1.20597 1.21066 1.24827 1.06513 0.99997 0.96238 1.20310 1.04284 0.96418 0.99129 1.20291 1.03317 0.95187 0.98261 1.26005 1.10197 1.04371 0.97096 1.84368 1.62081 1.02502 1.12992 0.92405 0.92029 0.92057 0.92385 0.92611 0.91334 0.90421 0.84229 0.94767 0.95752 0.92187 0.93199 0.84231 0.82477 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.13 -3.10 5.76 30.60 0.18 -2.92 16 3 C -0.10 -2.82 4.79 30.60 0.15 -2.67 16 4 C 0.15 5.34 2.29 44.17 0.10 5.44 16 5 H 0.04 1.54 7.09 -2.38 -0.02 1.52 16 6 N -0.68 -28.07 5.80 -477.13 -2.77 -30.84 16 7 C 0.23 11.38 2.38 44.17 0.11 11.49 16 8 H 0.00 -0.23 7.64 -2.39 -0.02 -0.25 16 9 C -0.16 -7.45 8.92 71.98 0.64 -6.81 16 10 C -0.51 -28.24 8.84 25.60 0.23 -28.02 16 11 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 12 C 0.01 0.49 5.31 84.65 0.45 0.94 16 13 N -0.92 -54.03 11.33 21.45 0.24 -53.79 16 14 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 18 C -0.16 -5.62 5.11 24.59 0.13 -5.50 16 19 C -0.17 -5.57 10.04 21.22 0.21 -5.36 16 20 C -0.14 -4.04 10.18 21.21 0.22 -3.82 16 21 C -0.24 -6.99 11.23 66.72 0.75 -6.24 16 22 S 0.12 4.01 23.07 -56.49 -1.30 2.71 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.50 6.43 -2.38 -0.02 1.48 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.34 13.08 6.21 -89.70 -0.56 12.52 16 31 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 32 H 0.02 1.03 7.43 -2.39 -0.02 1.01 16 33 H 0.06 3.25 6.08 -2.38 -0.01 3.24 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -61.51 313.96 2.54 -58.97 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.48 Total: 21.69 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.86 Total: -45.51 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.53 Total: -84.63 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.30 Total: 2.71 kcal Total: -61.51 2.54 -58.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.724 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds