Wall clock time and date at job start Mon Mar 30 2020 07:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47037 * 2 1 4 4 C 1.52998 * 109.46975 * 184.12502 * 3 2 1 5 5 H 1.09003 * 109.47034 * 305.91225 * 4 3 2 6 6 N 1.46897 * 109.47244 * 65.91564 * 4 3 2 7 7 C 1.46893 * 111.00086 * 209.34243 * 6 4 3 8 8 H 1.08997 * 109.47164 * 32.26873 * 7 6 4 9 9 C 1.53004 * 109.47426 * 272.26386 * 7 6 4 10 10 C 1.50705 * 109.47220 * 152.26536 * 7 6 4 11 11 H 1.07995 * 119.99759 * 5.79053 * 10 7 6 12 12 C 1.37877 * 120.00012 * 185.51175 * 10 7 6 13 13 N 1.31508 * 120.00370 * 357.39491 * 12 10 7 14 14 Si 1.86800 * 119.99737 * 177.38716 * 12 10 7 15 15 H 1.48503 * 109.46744 * 94.99662 * 14 12 10 16 16 H 1.48505 * 109.47341 * 214.99312 * 14 12 10 17 17 H 1.48495 * 109.47571 * 334.99799 * 14 12 10 18 18 C 1.50701 * 109.47181 * 185.91315 * 4 3 2 19 19 C 1.33389 * 125.20064 * 99.99917 * 18 4 3 20 20 C 1.38432 * 114.91923 * 179.97438 * 19 18 4 21 21 C 1.33383 * 114.92178 * 359.97438 * 20 19 18 22 22 S 1.75884 * 125.20329 * 279.69948 * 18 4 3 23 23 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47096 * 299.99535 * 1 2 3 25 25 H 1.09004 * 109.47210 * 59.99630 * 1 2 3 26 26 H 1.09005 * 109.46848 * 240.00305 * 2 1 3 27 27 H 1.08992 * 109.46914 * 120.00152 * 2 1 3 28 28 H 1.09009 * 109.46822 * 64.12739 * 3 2 1 29 29 H 1.08998 * 109.47361 * 304.12957 * 3 2 1 30 30 H 1.00900 * 111.00085 * 333.29782 * 6 4 3 31 31 H 1.08996 * 109.46933 * 305.00772 * 9 7 6 32 32 H 1.09000 * 109.46338 * 65.00510 * 9 7 6 33 33 H 1.08997 * 109.47014 * 185.00082 * 9 7 6 34 34 H 0.97002 * 120.00252 * 179.97438 * 13 12 10 35 35 H 1.08004 * 122.54350 * 359.97438 * 19 18 4 36 36 H 1.08003 * 122.53496 * 179.97438 * 20 19 18 37 37 H 1.08001 * 125.20494 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5664 1.4437 -0.1038 5 1 3.9849 0.8215 0.6873 6 7 3.9688 0.9094 -1.4116 7 6 5.2803 0.2528 -1.3312 8 1 5.4020 -0.1961 -0.3455 9 6 6.3838 1.2877 -1.5601 10 6 5.3708 -0.8196 -2.3862 11 1 4.5770 -0.9338 -3.1094 12 6 6.4697 -1.6510 -2.4315 13 7 7.4623 -1.4757 -1.5869 14 14 6.5485 -3.0268 -3.6927 15 1 7.2953 -2.5600 -4.8884 16 1 7.2420 -4.2000 -3.1028 17 1 5.1709 -3.4141 -4.0896 18 6 4.0787 2.8535 0.0420 19 6 4.5900 3.3742 1.1586 20 6 4.9969 4.6932 1.0540 21 6 4.8165 5.2434 -0.1476 22 16 4.1008 4.0615 -1.2361 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.7382 1.9345 0.9247 29 1 1.6175 1.9773 -0.8506 30 1 3.2702 0.2785 -1.7749 31 1 6.2112 1.7994 -2.5068 32 1 6.3747 2.0141 -0.7475 33 1 7.3514 0.7868 -1.5888 34 1 8.2353 -2.0609 -1.6186 35 1 4.6797 2.8095 2.0749 36 1 5.4277 5.2356 1.8827 37 1 5.0742 6.2582 -0.4128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:01 Heat of formation + Delta-G solvation = 15.671611 kcal Electronic energy + Delta-G solvation = -16887.628679 eV Core-core repulsion = 14369.895061 eV Total energy + Delta-G solvation = -2517.733618 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.12124 -36.35850 -34.25561 -32.30367 -30.31841 -28.21481 -26.48582 -25.13169 -23.95565 -21.90094 -20.49279 -19.92456 -18.70853 -16.67604 -16.34946 -15.24477 -15.07222 -14.59999 -14.29690 -13.59871 -13.42469 -12.84498 -12.58267 -12.42457 -12.20409 -11.89119 -11.82338 -11.51963 -11.27544 -10.99181 -10.81687 -10.71514 -10.63511 -10.37903 -10.29442 -10.13452 -10.06596 -9.88145 -8.84183 -8.46698 -8.09200 -7.91161 -7.37131 -6.02535 -4.08946 1.51089 2.19743 2.62802 3.19265 3.29144 3.36156 3.38957 4.40092 4.91358 5.16317 5.26622 5.29831 5.31228 5.41074 5.54162 5.77200 5.85696 5.89273 5.92982 5.98893 6.09868 6.20534 6.28739 6.44746 6.55826 6.59233 6.75820 6.90132 6.95371 7.23584 7.30238 7.49960 7.78136 7.91984 8.26033 8.36000 8.65896 9.02775 9.57249 11.04260 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.007407 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.494028 B = 3779.498598 C = 4864.861842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.115 4.115 4 C 0.148 3.852 5 H 0.058 0.942 6 N -0.683 5.683 7 C 0.215 3.785 8 H 0.006 0.994 9 C -0.120 4.120 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.123 4.123 19 C -0.169 4.169 20 C -0.131 4.131 21 C -0.251 4.251 22 S 0.143 5.857 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.338 0.662 31 H 0.030 0.970 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.260 0.740 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 8.393 4.554 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.153 4.153 4 C 0.035 3.965 5 H 0.076 0.924 6 N -0.317 5.317 7 C 0.107 3.893 8 H 0.023 0.977 9 C -0.178 4.178 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.242 4.242 19 C -0.199 4.199 20 C -0.162 4.162 21 C -0.387 4.387 22 S 0.407 5.593 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.253 8.927 2.850 13.169 hybrid contribution 0.639 -1.516 1.363 2.137 sum -8.613 7.411 4.213 12.118 Atomic orbital electron populations 1.21738 0.96039 1.01301 1.01446 1.21589 0.95543 0.96822 1.02718 1.21811 0.94393 0.96969 1.02175 1.20052 0.93283 0.89231 0.93921 0.92407 1.60777 1.06852 1.42956 1.21095 1.19173 0.83667 0.90586 0.95833 0.97679 1.21699 1.01521 0.97137 0.97449 1.21285 1.05275 1.14611 1.14733 0.92253 1.24916 0.95523 0.97572 0.95906 1.69934 1.07557 1.38364 1.36787 0.86554 0.78118 0.81679 0.81467 1.20732 1.21279 1.19889 1.24775 1.04174 0.99598 0.95675 1.20000 1.04796 0.95796 0.99318 1.19981 1.03385 0.95204 0.97637 1.25643 1.11033 1.03776 0.98243 1.84288 1.59846 1.01097 1.14029 0.92958 0.93144 0.92789 0.91107 0.92110 0.91889 0.91280 0.84195 0.95045 0.97266 0.91101 0.92971 0.85230 0.85425 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.76 5.84 -26.73 -0.16 -1.91 16 3 C -0.12 -1.66 4.74 -26.73 -0.13 -1.79 16 4 C 0.15 2.62 2.47 -68.87 -0.17 2.45 16 5 H 0.06 1.12 7.30 -51.93 -0.38 0.74 16 6 N -0.68 -14.10 5.93 -102.17 -0.61 -14.71 16 7 C 0.21 5.37 2.53 -68.86 -0.17 5.19 16 8 H 0.01 0.15 7.33 -51.93 -0.38 -0.23 16 9 C -0.12 -3.01 9.04 37.16 0.34 -2.68 16 10 C -0.52 -14.11 8.49 -34.44 -0.29 -14.40 16 11 H 0.06 1.59 7.63 -52.49 -0.40 1.18 16 12 C 0.06 1.74 5.33 -17.82 -0.09 1.64 16 13 N -0.89 -25.51 11.61 55.43 0.64 -24.86 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.12 -2.14 3.82 -36.00 -0.14 -2.28 16 19 C -0.17 -2.75 10.04 -41.20 -0.41 -3.16 16 20 C -0.13 -1.93 10.18 -41.21 -0.42 -2.35 16 21 C -0.25 -3.67 11.23 29.04 0.33 -3.34 16 22 S 0.14 2.36 23.07 -107.50 -2.48 -0.12 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.07 6.40 -51.93 -0.33 0.73 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.34 6.78 5.94 -39.29 -0.23 6.55 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.01 0.20 6.85 -51.93 -0.36 -0.15 16 33 H 0.07 1.96 6.32 -51.93 -0.33 1.63 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.13 1.95 8.06 -52.48 -0.42 1.52 16 36 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -28.40 312.33 -9.48 -37.88 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.77 Total: 4.83 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -0.96 Total: -23.93 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.04 Total: -39.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.48 Total: -0.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.40 -9.48 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.554 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds