Wall clock time and date at job start Mon Mar 30 2020 07:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47037 * 2 1 4 4 C 1.52998 * 109.46975 * 184.12502 * 3 2 1 5 5 H 1.09003 * 109.47034 * 305.91225 * 4 3 2 6 6 N 1.46897 * 109.47244 * 65.91564 * 4 3 2 7 7 C 1.46893 * 111.00086 * 209.34243 * 6 4 3 8 8 H 1.08997 * 109.47164 * 32.26873 * 7 6 4 9 9 C 1.53004 * 109.47426 * 272.26386 * 7 6 4 10 10 C 1.50705 * 109.47220 * 152.26536 * 7 6 4 11 11 H 1.07995 * 119.99759 * 5.79053 * 10 7 6 12 12 C 1.37877 * 120.00012 * 185.51175 * 10 7 6 13 13 N 1.31508 * 120.00370 * 357.39491 * 12 10 7 14 14 Si 1.86800 * 119.99737 * 177.38716 * 12 10 7 15 15 H 1.48503 * 109.46744 * 94.99662 * 14 12 10 16 16 H 1.48505 * 109.47341 * 214.99312 * 14 12 10 17 17 H 1.48495 * 109.47571 * 334.99799 * 14 12 10 18 18 C 1.50701 * 109.47181 * 185.91315 * 4 3 2 19 19 C 1.33389 * 125.20064 * 99.99917 * 18 4 3 20 20 C 1.38432 * 114.91923 * 179.97438 * 19 18 4 21 21 C 1.33383 * 114.92178 * 359.97438 * 20 19 18 22 22 S 1.75884 * 125.20329 * 279.69948 * 18 4 3 23 23 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47096 * 299.99535 * 1 2 3 25 25 H 1.09004 * 109.47210 * 59.99630 * 1 2 3 26 26 H 1.09005 * 109.46848 * 240.00305 * 2 1 3 27 27 H 1.08992 * 109.46914 * 120.00152 * 2 1 3 28 28 H 1.09009 * 109.46822 * 64.12739 * 3 2 1 29 29 H 1.08998 * 109.47361 * 304.12957 * 3 2 1 30 30 H 1.00900 * 111.00085 * 333.29782 * 6 4 3 31 31 H 1.08996 * 109.46933 * 305.00772 * 9 7 6 32 32 H 1.09000 * 109.46338 * 65.00510 * 9 7 6 33 33 H 1.08997 * 109.47014 * 185.00082 * 9 7 6 34 34 H 0.97002 * 120.00252 * 179.97438 * 13 12 10 35 35 H 1.08004 * 122.54350 * 359.97438 * 19 18 4 36 36 H 1.08003 * 122.53496 * 179.97438 * 20 19 18 37 37 H 1.08001 * 125.20494 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5664 1.4437 -0.1038 5 1 3.9849 0.8215 0.6873 6 7 3.9688 0.9094 -1.4116 7 6 5.2803 0.2528 -1.3312 8 1 5.4020 -0.1961 -0.3455 9 6 6.3838 1.2877 -1.5601 10 6 5.3708 -0.8196 -2.3862 11 1 4.5770 -0.9338 -3.1094 12 6 6.4697 -1.6510 -2.4315 13 7 7.4623 -1.4757 -1.5869 14 14 6.5485 -3.0268 -3.6927 15 1 7.2953 -2.5600 -4.8884 16 1 7.2420 -4.2000 -3.1028 17 1 5.1709 -3.4141 -4.0896 18 6 4.0787 2.8535 0.0420 19 6 4.5900 3.3742 1.1586 20 6 4.9969 4.6932 1.0540 21 6 4.8165 5.2434 -0.1476 22 16 4.1008 4.0615 -1.2361 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.7382 1.9345 0.9247 29 1 1.6175 1.9773 -0.8506 30 1 3.2702 0.2785 -1.7749 31 1 6.2112 1.7994 -2.5068 32 1 6.3747 2.0141 -0.7475 33 1 7.3514 0.7868 -1.5888 34 1 8.2353 -2.0609 -1.6186 35 1 4.6797 2.8095 2.0749 36 1 5.4277 5.2356 1.8827 37 1 5.0742 6.2582 -0.4128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:59 Heat of formation + Delta-G solvation = 0.230046 kcal Electronic energy + Delta-G solvation = -16888.298275 eV Core-core repulsion = 14369.895061 eV Total energy + Delta-G solvation = -2518.403214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51162 -37.72912 -35.91208 -33.98167 -31.90384 -29.72343 -27.91046 -27.21038 -25.21151 -23.12671 -22.07365 -21.54113 -19.96216 -18.58461 -17.76307 -16.90226 -16.44001 -16.08055 -15.87186 -15.01701 -14.90121 -14.45512 -13.95956 -13.75420 -13.45668 -13.29530 -13.21794 -13.00227 -12.82982 -12.81219 -12.46927 -12.30801 -12.20877 -12.03862 -11.80542 -11.63441 -11.51191 -11.39519 -10.88122 -10.56594 -9.37188 -9.24507 -9.07147 -8.13587 -6.27535 0.27087 0.95044 1.38684 1.41116 1.42118 1.52626 1.97468 2.41032 3.16183 3.52476 3.89000 4.06849 4.12054 4.32711 4.38115 4.55020 4.67959 4.78084 4.79418 4.82878 4.87092 4.93435 5.09435 5.13431 5.25031 5.28438 5.30108 5.33795 5.46345 5.47769 5.53715 5.65358 5.73820 5.87066 6.20488 6.45862 6.77439 7.01882 7.43355 8.92700 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.007407 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.494028 B = 3779.498598 C = 4864.861842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C -0.104 4.104 4 C 0.149 3.851 5 H 0.037 0.963 6 N -0.677 5.677 7 C 0.225 3.775 8 H -0.030 1.030 9 C -0.101 4.101 10 C -0.536 4.536 11 H 0.060 0.940 12 C 0.014 3.986 13 N -0.919 5.919 14 Si 0.960 3.040 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.151 4.151 19 C -0.171 4.171 20 C -0.138 4.138 21 C -0.238 4.238 22 S 0.118 5.882 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.339 0.661 31 H 0.028 0.972 32 H 0.016 0.984 33 H 0.042 0.958 34 H 0.261 0.739 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 9.201 4.505 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.142 4.142 4 C 0.037 3.963 5 H 0.055 0.945 6 N -0.310 5.310 7 C 0.116 3.884 8 H -0.012 1.012 9 C -0.159 4.159 10 C -0.575 4.575 11 H 0.079 0.921 12 C -0.186 4.186 13 N -0.558 5.558 14 Si 0.785 3.215 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.269 4.269 19 C -0.202 4.202 20 C -0.169 4.169 21 C -0.374 4.374 22 S 0.382 5.618 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.222 9.746 2.804 14.399 hybrid contribution 0.946 -1.692 1.444 2.418 sum -9.276 8.054 4.248 12.998 Atomic orbital electron populations 1.21691 0.93785 1.02115 1.02340 1.21567 0.97489 0.95993 1.01527 1.21731 0.91775 0.97640 1.03022 1.20056 0.95529 0.89212 0.91484 0.94547 1.60666 1.05232 1.42001 1.23136 1.18887 0.85798 0.90241 0.93441 1.01222 1.21464 1.00116 0.96862 0.97485 1.21615 1.05362 1.15375 1.15135 0.92149 1.25727 0.95156 0.99903 0.97788 1.70064 1.08068 1.39310 1.38333 0.85519 0.78420 0.78625 0.78912 1.20396 1.20979 1.18914 1.24725 1.06030 0.99554 0.96614 1.20302 1.03860 0.96763 0.99265 1.20270 1.03266 0.94632 0.98703 1.25997 1.09541 1.04476 0.97371 1.84312 1.60783 1.01928 1.14819 0.92237 0.91850 0.92270 0.92968 0.92662 0.90326 0.91001 0.83995 0.95294 0.96481 0.93894 0.92946 0.84569 0.82551 0.79941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.13 -3.43 5.84 30.59 0.18 -3.25 16 3 C -0.10 -2.92 4.74 30.59 0.15 -2.77 16 4 C 0.15 5.36 2.47 44.17 0.11 5.47 16 5 H 0.04 1.46 7.30 -2.39 -0.02 1.45 16 6 N -0.68 -28.42 5.93 -477.17 -2.83 -31.25 16 7 C 0.22 11.54 2.53 44.17 0.11 11.65 16 8 H -0.03 -1.72 7.33 -2.39 -0.02 -1.73 16 9 C -0.10 -5.18 9.04 71.98 0.65 -4.53 16 10 C -0.54 -29.50 8.49 25.60 0.22 -29.28 16 11 H 0.06 3.24 7.63 -2.91 -0.02 3.22 16 12 C 0.01 0.75 5.33 84.66 0.45 1.20 16 13 N -0.92 -53.77 11.61 21.45 0.25 -53.52 16 14 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 C -0.15 -5.17 3.82 24.59 0.09 -5.07 16 19 C -0.17 -5.37 10.04 21.22 0.21 -5.16 16 20 C -0.14 -3.74 10.18 21.22 0.22 -3.52 16 21 C -0.24 -6.35 11.23 66.72 0.75 -5.60 16 22 S 0.12 3.75 23.07 -56.49 -1.30 2.45 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.05 1.58 6.40 -2.38 -0.02 1.57 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.34 13.87 5.94 -89.69 -0.53 13.33 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16 33 H 0.04 2.43 6.32 -2.39 -0.02 2.41 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -60.86 312.33 2.50 -58.36 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.51 Total: 21.35 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 3.85 Total: -43.10 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.58 Total: -84.77 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.30 Total: 2.45 kcal Total: -60.86 2.50 -58.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.586 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds