Wall clock time and date at job start Mon Mar 30 2020 07:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46979 * 2 1 4 4 C 1.53008 * 109.46886 * 183.56319 * 3 2 1 5 5 H 1.08996 * 109.47168 * 305.58988 * 4 3 2 6 6 N 1.46905 * 109.46998 * 185.59339 * 4 3 2 7 7 C 1.46894 * 111.00179 * 86.12686 * 6 4 3 8 8 C 1.52998 * 109.47456 * 174.81129 * 7 6 4 9 9 C 1.50697 * 109.47412 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00136 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00196 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99867 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00259 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47076 * 60.00119 * 13 11 9 15 15 H 1.48498 * 109.47414 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47123 * 300.00344 * 13 11 9 17 17 C 1.50701 * 109.47236 * 65.59629 * 4 3 2 18 18 C 1.33393 * 125.19766 * 259.99976 * 17 4 3 19 19 C 1.38422 * 114.91884 * 179.97438 * 18 17 4 20 20 C 1.33384 * 114.92217 * 0.02562 * 19 18 17 21 21 S 1.75879 * 125.20482 * 79.69231 * 17 4 3 22 22 H 1.08998 * 109.47091 * 300.00196 * 1 2 3 23 23 H 1.09003 * 109.46750 * 60.00113 * 1 2 3 24 24 H 1.09000 * 109.47068 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47091 * 239.99804 * 2 1 3 26 26 H 1.09003 * 109.46750 * 119.99886 * 2 1 3 27 27 H 1.08999 * 109.47513 * 63.56119 * 3 2 1 28 28 H 1.09005 * 109.47406 * 303.55894 * 3 2 1 29 29 H 1.00900 * 110.99994 * 322.17563 * 6 4 3 30 30 H 1.09004 * 109.47409 * 294.81747 * 7 6 4 31 31 H 1.09007 * 109.47323 * 54.81417 * 7 6 4 32 32 H 1.08996 * 109.46980 * 300.00791 * 8 7 6 33 33 H 1.09003 * 109.46822 * 60.00581 * 8 7 6 34 34 H 0.96999 * 120.00131 * 179.97438 * 12 11 9 35 35 H 1.08004 * 122.54208 * 359.97438 * 18 17 4 36 36 H 1.08003 * 122.53787 * 180.02562 * 19 18 17 37 37 H 1.08003 * 125.20617 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5674 1.4434 -0.0897 5 1 3.9787 0.8283 0.7107 6 7 4.0650 2.8190 0.0449 7 6 4.2361 3.1811 1.4583 8 6 4.8752 4.5677 1.5558 9 6 5.0501 4.9394 3.0057 10 1 4.7371 4.2549 3.7802 11 6 5.6106 6.1529 3.3436 12 7 5.9922 6.9863 2.4005 13 14 5.8280 6.6134 5.1408 14 1 6.7052 5.6159 5.8048 15 1 6.4482 7.9593 5.2355 16 1 4.5030 6.6312 5.8111 17 6 3.9928 0.8836 -1.4226 18 6 4.4167 -0.3636 -1.6329 19 6 4.7537 -0.6518 -2.9441 20 6 4.6039 0.3613 -3.7986 21 16 3.9989 1.7724 -2.9403 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7297 1.9376 0.9202 28 1 1.6255 1.9744 -0.8564 29 1 3.4551 3.4717 -0.4242 30 1 3.2635 3.1937 1.9504 31 1 4.8803 2.4491 1.9455 32 1 5.8476 4.5550 1.0637 33 1 4.2310 5.2998 1.0687 34 1 6.3862 7.8402 2.6381 35 1 4.4913 -1.0933 -0.8401 36 1 5.1108 -1.6235 -3.2520 37 1 4.8173 0.3203 -4.8566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:31 Heat of formation + Delta-G solvation = 7.483535 kcal Electronic energy + Delta-G solvation = -16170.956222 eV Core-core repulsion = 13652.867542 eV Total energy + Delta-G solvation = -2518.088679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.47576 -36.55495 -34.30861 -32.82019 -30.82641 -28.61481 -27.16683 -24.64065 -23.62002 -21.89074 -21.01875 -20.67043 -18.98115 -17.00678 -16.27794 -15.60718 -15.07938 -14.94466 -14.45151 -14.17438 -13.60517 -13.30768 -12.84955 -12.62394 -12.50409 -12.21826 -12.13427 -11.80454 -11.58240 -11.30145 -11.05195 -11.01404 -10.91515 -10.68003 -10.56690 -10.41788 -10.00117 -9.42681 -9.15874 -8.49048 -8.33703 -8.26613 -7.84726 -5.98487 -4.01349 1.18635 1.83793 2.24466 2.88277 3.33985 3.38489 3.40631 4.41735 4.59882 4.84583 4.94295 5.03484 5.14963 5.24376 5.37360 5.45707 5.54792 5.63403 5.67552 5.76016 5.81330 5.89825 6.04127 6.17981 6.23311 6.29840 6.30927 6.38232 6.48978 6.60763 6.96807 7.42886 7.71220 7.78571 7.92853 8.08967 8.43670 9.05739 9.62321 11.12869 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.004660 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.873040 B = 6007.776911 C = 6750.278831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.145 4.145 4 C 0.150 3.850 5 H 0.092 0.908 6 N -0.684 5.684 7 C 0.068 3.932 8 C 0.027 3.973 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.133 4.133 18 C -0.158 4.158 19 C -0.132 4.132 20 C -0.236 4.236 21 S 0.122 5.878 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.337 0.663 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 -14.954 -10.042 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.184 4.184 4 C 0.038 3.962 5 H 0.110 0.890 6 N -0.313 5.313 7 C -0.060 4.060 8 C -0.011 4.011 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.252 4.252 18 C -0.188 4.188 19 C -0.163 4.163 20 C -0.372 4.372 21 S 0.385 5.615 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.328 -13.456 -10.583 18.622 hybrid contribution -0.286 -1.024 1.601 1.922 sum -7.614 -14.481 -8.983 18.664 Atomic orbital electron populations 1.21767 0.96095 1.01267 1.01724 1.21505 0.95614 0.96644 1.02211 1.22372 0.95849 0.97656 1.02563 1.20114 0.92329 0.92265 0.91528 0.89038 1.60699 1.52843 1.00923 1.16831 1.22206 0.98339 1.00742 0.84730 1.19043 0.96432 0.88968 0.96612 1.21129 1.40719 1.02119 0.92188 0.92847 1.24992 0.95520 0.96496 0.97263 1.69964 1.41763 1.09292 1.32157 0.86657 0.78349 0.77579 0.85387 1.20232 1.21262 1.20310 1.24633 1.05360 0.96788 0.98375 1.20000 1.04878 0.96526 0.97379 1.20054 1.03493 0.99873 0.92852 1.25599 1.10794 0.97299 1.03485 1.84342 1.63677 1.14393 0.99039 0.92833 0.92890 0.93008 0.91567 0.92117 0.91094 0.91730 0.84517 0.96361 0.92253 0.95616 0.96793 0.92933 0.84846 0.84959 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.31 5.80 -26.73 -0.16 -1.46 16 3 C -0.14 -1.82 4.65 -26.73 -0.12 -1.95 16 4 C 0.15 2.17 2.49 -68.86 -0.17 2.00 16 5 H 0.09 1.35 7.68 -51.93 -0.40 0.95 16 6 N -0.68 -12.13 5.99 -107.95 -0.65 -12.77 16 7 C 0.07 1.40 5.45 -3.83 -0.02 1.38 16 8 C 0.03 0.70 5.28 -27.89 -0.15 0.56 16 9 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C -0.13 -1.84 4.69 -36.00 -0.17 -2.00 16 18 C -0.16 -1.97 9.23 -41.21 -0.38 -2.35 16 19 C -0.13 -1.51 10.18 -41.21 -0.42 -1.93 16 20 C -0.24 -2.74 11.23 29.04 0.33 -2.41 16 21 S 0.12 1.62 23.08 -107.50 -2.48 -0.87 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.72 6.67 -51.93 -0.35 0.38 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.95 7.51 -51.93 -0.39 0.56 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.34 5.83 8.52 -39.29 -0.33 5.49 16 30 H 0.02 0.37 7.55 -51.93 -0.39 -0.02 16 31 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -29.98 319.75 -9.94 -39.92 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.04 Total: 1.35 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -1.30 Total: -22.84 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.09 Total: -39.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.98 -9.94 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.408 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds