Wall clock time and date at job start Mon Mar 30 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47410 * 2 1 4 4 C 1.53005 * 109.47244 * 185.15526 * 3 2 1 5 5 H 1.09000 * 109.46537 * 54.64132 * 4 3 2 6 6 N 1.46899 * 109.47099 * 174.64068 * 4 3 2 7 7 C 1.46897 * 111.00084 * 273.62557 * 6 4 3 8 8 C 1.53006 * 109.46875 * 180.67229 * 7 6 4 9 9 C 1.50702 * 109.46769 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99490 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00363 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99551 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47206 * 60.00579 * 13 11 9 15 15 H 1.48508 * 109.46792 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47360 * 299.99957 * 13 11 9 17 17 C 1.50699 * 109.46982 * 294.64608 * 4 3 2 18 18 C 1.33387 * 125.20399 * 99.72195 * 17 4 3 19 19 C 1.38425 * 114.91914 * 179.85493 * 18 17 4 20 20 C 1.33388 * 114.92083 * 0.42988 * 19 18 17 21 21 S 1.75884 * 125.20054 * 280.01877 * 17 4 3 22 22 H 1.09008 * 109.46646 * 60.00571 * 1 2 3 23 23 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47674 * 300.00792 * 1 2 3 25 25 H 1.09005 * 109.46624 * 119.99958 * 2 1 3 26 26 H 1.08997 * 109.47674 * 239.99208 * 2 1 3 27 27 H 1.08999 * 109.46664 * 305.15329 * 3 2 1 28 28 H 1.09002 * 109.47237 * 65.15650 * 3 2 1 29 29 H 1.00902 * 110.99720 * 37.58219 * 6 4 3 30 30 H 1.08994 * 109.47151 * 300.67092 * 7 6 4 31 31 H 1.09000 * 109.47340 * 60.67670 * 7 6 4 32 32 H 1.08994 * 109.47119 * 299.99883 * 8 7 6 33 33 H 1.09000 * 109.46776 * 60.00096 * 8 7 6 34 34 H 0.97006 * 120.00223 * 179.97438 * 12 11 9 35 35 H 1.08001 * 122.53985 * 0.02562 * 18 17 4 36 36 H 1.08000 * 122.54387 * 180.19731 * 19 18 17 37 37 H 1.08001 * 125.20925 * 179.74822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 -0.1296 5 1 3.8547 0.8755 -1.0129 6 7 4.0433 2.8272 -0.2586 7 6 4.0176 3.2645 -1.6608 8 6 4.5377 4.7002 -1.7567 9 6 4.5119 5.1487 -3.1952 10 1 4.1594 4.4770 -3.9640 11 6 4.9374 6.4168 -3.5297 12 7 5.3661 7.2348 -2.5934 13 14 4.9061 6.9724 -5.3129 14 1 3.5135 6.9147 -5.8250 15 1 5.4108 8.3660 -5.4060 16 1 5.7698 6.0784 -6.1252 17 6 4.1737 0.8141 1.0962 18 6 4.6135 -0.4426 1.1769 19 6 5.1376 -0.7993 2.4074 20 6 5.1152 0.1650 3.3287 21 16 4.4066 1.6208 2.6417 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8932 -0.5139 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.6032 1.9822 -0.8402 28 1 1.7541 1.9290 0.9326 29 1 3.5067 3.4515 0.3248 30 1 4.6506 2.6081 -2.2577 31 1 2.9950 3.2228 -2.0357 32 1 3.9047 5.3567 -1.1597 33 1 5.5603 4.7420 -1.3817 34 1 5.6658 8.1269 -2.8288 35 1 4.5668 -1.1290 0.3443 36 1 5.5313 -1.7848 2.6076 37 1 5.4766 0.0669 4.3417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:38 Heat of formation + Delta-G solvation = 7.291759 kcal Electronic energy + Delta-G solvation = -16169.919359 eV Core-core repulsion = 13651.822364 eV Total energy + Delta-G solvation = -2518.096995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -38.46771 -36.56045 -34.31014 -32.82231 -30.83533 -28.60810 -27.16102 -24.63441 -23.61806 -21.88998 -21.01791 -20.68988 -18.98692 -16.99438 -16.27892 -15.59461 -15.07201 -14.94030 -14.44748 -14.16612 -13.57762 -13.37631 -12.85651 -12.61782 -12.48068 -12.22981 -12.15226 -11.81523 -11.52685 -11.30282 -11.06910 -11.00727 -10.92168 -10.68003 -10.56250 -10.41774 -10.02201 -9.42123 -9.16880 -8.49141 -8.34440 -8.26741 -7.84976 -5.99035 -4.01892 1.18685 1.83839 2.24583 2.88336 3.33785 3.38268 3.40438 4.41626 4.60046 4.84417 4.93967 5.04433 5.14955 5.24535 5.36878 5.45892 5.55932 5.63668 5.67520 5.76343 5.81465 5.89950 6.04576 6.18947 6.23619 6.29531 6.32403 6.37762 6.49094 6.60798 6.95747 7.42456 7.70647 7.78942 7.91578 8.07766 8.43021 9.05048 9.61836 11.12312 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.004669 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.564602 B = 5995.080328 C = 6746.558321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.145 4.145 4 C 0.150 3.850 5 H 0.091 0.909 6 N -0.684 5.684 7 C 0.067 3.933 8 C 0.026 3.974 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.133 4.133 18 C -0.157 4.157 19 C -0.132 4.132 20 C -0.236 4.236 21 S 0.122 5.878 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -15.717 10.040 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.184 4.184 4 C 0.038 3.962 5 H 0.109 0.891 6 N -0.314 5.314 7 C -0.060 4.060 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.252 4.252 18 C -0.188 4.188 19 C -0.163 4.163 20 C -0.372 4.372 21 S 0.386 5.614 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.244 -14.240 10.604 18.513 hybrid contribution -0.524 -0.941 -1.593 1.923 sum -5.768 -15.181 9.011 18.573 Atomic orbital electron populations 1.21773 0.96096 1.01268 1.01766 1.21481 0.95561 0.96605 1.02128 1.22371 0.95861 0.97655 1.02561 1.20111 0.91224 0.91706 0.93181 0.89065 1.60712 1.58462 1.00827 1.11350 1.22203 0.98239 1.00197 0.85397 1.19060 0.97116 0.88336 0.96650 1.21123 1.43209 0.98714 0.93094 0.92823 1.24991 0.95286 0.96747 0.97240 1.69961 1.43302 1.07472 1.32450 0.86656 0.78344 0.77684 0.85284 1.20300 1.21259 1.20226 1.24638 1.05024 0.96955 0.98557 1.19995 1.03885 0.96108 0.98788 1.20054 1.02911 1.00225 0.93083 1.25601 1.10320 0.97444 1.03852 1.84351 1.59077 1.14155 1.03829 0.92781 0.93008 0.92895 0.91744 0.92099 0.91043 0.91730 0.84471 0.92218 0.96346 0.96803 0.95606 0.92924 0.84866 0.84971 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.15 0.37 -1.11 16 2 C -0.12 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C -0.14 -1.83 4.65 -26.73 -0.12 -1.96 16 4 C 0.15 2.18 2.49 -68.86 -0.17 2.01 16 5 H 0.09 1.34 7.75 -51.93 -0.40 0.94 16 6 N -0.68 -12.14 6.01 -107.95 -0.65 -12.79 16 7 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 8 C 0.03 0.67 5.24 -27.88 -0.15 0.53 16 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 13 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.13 -1.84 4.70 -36.00 -0.17 -2.01 16 18 C -0.16 -1.97 9.48 -41.21 -0.39 -2.36 16 19 C -0.13 -1.51 10.18 -41.21 -0.42 -1.93 16 20 C -0.24 -2.74 11.23 29.04 0.33 -2.41 16 21 S 0.12 1.62 23.07 -107.50 -2.48 -0.86 16 22 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.70 7.16 -51.93 -0.37 0.33 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.97 7.46 -51.93 -0.39 0.58 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.34 5.87 8.47 -39.29 -0.33 5.54 16 30 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 31 H 0.02 0.37 7.47 -51.93 -0.39 -0.02 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -29.90 320.27 -9.96 -39.87 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.07 Total: 1.40 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -1.31 Total: -22.85 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.09 Total: -39.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.90 -9.96 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.157 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds