Wall clock time and date at job start Mon Mar 30 2020 07:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47410 * 2 1 4 4 C 1.53005 * 109.47244 * 185.15526 * 3 2 1 5 5 H 1.09000 * 109.46537 * 54.64132 * 4 3 2 6 6 N 1.46899 * 109.47099 * 174.64068 * 4 3 2 7 7 C 1.46897 * 111.00084 * 273.62557 * 6 4 3 8 8 C 1.53006 * 109.46875 * 180.67229 * 7 6 4 9 9 C 1.50702 * 109.46769 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00102 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99490 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00363 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99551 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47206 * 60.00579 * 13 11 9 15 15 H 1.48508 * 109.46792 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47360 * 299.99957 * 13 11 9 17 17 C 1.50699 * 109.46982 * 294.64608 * 4 3 2 18 18 C 1.33387 * 125.20399 * 99.72195 * 17 4 3 19 19 C 1.38425 * 114.91914 * 179.85493 * 18 17 4 20 20 C 1.33388 * 114.92083 * 0.42988 * 19 18 17 21 21 S 1.75884 * 125.20054 * 280.01877 * 17 4 3 22 22 H 1.09008 * 109.46646 * 60.00571 * 1 2 3 23 23 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47674 * 300.00792 * 1 2 3 25 25 H 1.09005 * 109.46624 * 119.99958 * 2 1 3 26 26 H 1.08997 * 109.47674 * 239.99208 * 2 1 3 27 27 H 1.08999 * 109.46664 * 305.15329 * 3 2 1 28 28 H 1.09002 * 109.47237 * 65.15650 * 3 2 1 29 29 H 1.00902 * 110.99720 * 37.58219 * 6 4 3 30 30 H 1.08994 * 109.47151 * 300.67092 * 7 6 4 31 31 H 1.09000 * 109.47340 * 60.67670 * 7 6 4 32 32 H 1.08994 * 109.47119 * 299.99883 * 8 7 6 33 33 H 1.09000 * 109.46776 * 60.00096 * 8 7 6 34 34 H 0.97006 * 120.00223 * 179.97438 * 12 11 9 35 35 H 1.08001 * 122.53985 * 0.02562 * 18 17 4 36 36 H 1.08000 * 122.54387 * 180.19731 * 19 18 17 37 37 H 1.08001 * 125.20925 * 179.74822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 -0.1296 5 1 3.8547 0.8755 -1.0129 6 7 4.0433 2.8272 -0.2586 7 6 4.0176 3.2645 -1.6608 8 6 4.5377 4.7002 -1.7567 9 6 4.5119 5.1487 -3.1952 10 1 4.1594 4.4770 -3.9640 11 6 4.9374 6.4168 -3.5297 12 7 5.3661 7.2348 -2.5934 13 14 4.9061 6.9724 -5.3129 14 1 3.5135 6.9147 -5.8250 15 1 5.4108 8.3660 -5.4060 16 1 5.7698 6.0784 -6.1252 17 6 4.1737 0.8141 1.0962 18 6 4.6135 -0.4426 1.1769 19 6 5.1376 -0.7993 2.4074 20 6 5.1152 0.1650 3.3287 21 16 4.4066 1.6208 2.6417 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8932 -0.5139 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.6032 1.9822 -0.8402 28 1 1.7541 1.9290 0.9326 29 1 3.5067 3.4515 0.3248 30 1 4.6506 2.6081 -2.2577 31 1 2.9950 3.2228 -2.0357 32 1 3.9047 5.3567 -1.1597 33 1 5.5603 4.7420 -1.3817 34 1 5.6658 8.1269 -2.8288 35 1 4.5668 -1.1290 0.3443 36 1 5.5313 -1.7848 2.6076 37 1 5.4766 0.0669 4.3417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:35 Heat of formation + Delta-G solvation = -9.663971 kcal Electronic energy + Delta-G solvation = -16170.654615 eV Core-core repulsion = 13651.822364 eV Total energy + Delta-G solvation = -2518.832251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.56635 -37.71256 -35.80862 -34.56702 -32.29425 -30.08483 -28.32473 -26.21950 -24.92760 -22.97137 -22.55669 -21.96686 -19.98456 -18.54591 -17.99093 -16.70645 -16.48456 -16.29556 -15.83500 -15.55572 -14.85507 -14.66242 -14.26577 -13.83976 -13.65164 -13.44985 -13.27340 -13.12531 -12.87207 -12.83966 -12.48528 -12.44713 -12.29084 -11.98610 -11.88180 -11.57378 -11.45061 -11.39873 -11.25460 -10.55941 -9.53615 -9.29219 -9.21729 -8.19744 -6.31543 0.21816 0.85392 1.28356 1.40609 1.43937 1.51806 1.94908 2.40860 3.13781 3.27967 3.78969 3.88955 4.11546 4.27514 4.32344 4.41425 4.54301 4.56346 4.68478 4.74187 4.79215 4.84905 4.92413 4.99605 5.06551 5.20719 5.29276 5.32171 5.43090 5.44475 5.50837 5.65658 5.68224 5.78891 6.11464 6.24211 6.44582 6.85479 7.37831 8.92260 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.004669 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.564602 B = 5995.080328 C = 6746.558321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.154 3.846 5 H 0.090 0.910 6 N -0.692 5.692 7 C 0.088 3.912 8 C 0.033 3.967 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.267 1.267 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.137 4.137 20 C -0.227 4.227 21 S 0.082 5.918 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.025 0.975 32 H -0.010 1.010 33 H -0.008 1.008 34 H 0.264 0.736 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 -17.561 9.557 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.177 4.177 4 C 0.043 3.957 5 H 0.108 0.892 6 N -0.321 5.321 7 C -0.040 4.040 8 C -0.005 4.005 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.209 1.209 16 H -0.192 1.192 17 C -0.273 4.273 18 C -0.182 4.182 19 C -0.167 4.167 20 C -0.363 4.363 21 S 0.346 5.654 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.614 -16.111 10.129 19.841 hybrid contribution -0.377 -0.420 -1.350 1.464 sum -5.991 -16.531 8.779 19.653 Atomic orbital electron populations 1.21761 0.95192 1.02171 1.01643 1.21422 0.96283 0.94993 1.02393 1.22276 0.94506 0.99038 1.01910 1.20092 0.92431 0.89391 0.93803 0.89192 1.60600 1.59466 1.02683 1.09367 1.21784 0.98088 0.96763 0.87411 1.18904 0.94817 0.91369 0.95392 1.21574 1.43220 0.99288 0.94225 0.92012 1.25973 0.94627 0.96836 1.02232 1.70107 1.44174 1.07919 1.35002 0.85481 0.78966 0.77241 0.79224 1.19043 1.20864 1.19171 1.24524 1.06894 0.97648 0.98240 1.20296 1.02445 0.95685 0.99758 1.20374 1.02504 1.01437 0.92406 1.25921 1.09327 0.96047 1.04987 1.84488 1.60240 1.16119 1.04572 0.93066 0.91590 0.92902 0.91593 0.91621 0.92107 0.91989 0.84503 0.92278 0.95668 0.99134 0.98992 0.92764 0.83335 0.82139 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.11 -2.26 5.61 30.59 0.17 -2.09 16 3 C -0.14 -3.42 4.65 30.60 0.14 -3.28 16 4 C 0.15 4.42 2.49 44.17 0.11 4.53 16 5 H 0.09 2.58 7.75 -2.39 -0.02 2.56 16 6 N -0.69 -25.02 6.01 -495.45 -2.98 -28.00 16 7 C 0.09 3.72 5.42 86.31 0.47 4.18 16 8 C 0.03 1.77 5.24 29.85 0.16 1.92 16 9 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 10 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 11 C 0.00 0.08 5.46 84.66 0.46 0.54 16 12 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 13 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 C -0.15 -4.14 4.70 24.59 0.12 -4.02 16 18 C -0.15 -3.46 9.48 21.22 0.20 -3.26 16 19 C -0.14 -2.76 10.18 21.22 0.22 -2.54 16 20 C -0.23 -4.78 11.23 66.72 0.75 -4.03 16 21 S 0.08 2.16 23.07 -56.49 -1.30 0.85 16 22 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.32 7.16 -2.38 -0.02 1.30 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.63 7.46 -2.39 -0.02 1.61 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.34 12.16 8.47 -89.69 -0.76 11.40 16 30 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 31 H 0.03 1.02 7.47 -2.39 -0.02 1.00 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -64.51 320.27 2.04 -62.47 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.27 Total: 16.55 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.74 Total: -41.08 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -2.69 Total: -85.29 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.30 Total: 0.85 kcal Total: -64.51 2.04 -62.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.808 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds